Carg00035 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00035
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_001 : 131058 .. 131992 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCTTTTAGCTTCTTGCTTCCCTCTGATCTTAGGGTTTTCATTGTCAATCTTCGCGGCTTTATTTATCGGCGATGGCGAAGAACAGGAATAAGAAGAAGAAGGGAAGTGGAGCTATTTCAATGGACATAACCGAAAAATTCTGTTCACGAGCTCCCTCAAGGTACATTTCAGTTATGTGAAAAGGGATTGAACTTAACAGTATCAGAAAGAATGAGAATTTATCTTGTCCATTGCCCCCCTTTAAGATGTTTTAGATCTCCTGTGTTTTCATAGAGTAGTTTTCAAGTTTAACCAAGTGATTTCCCCCTTGAATTTAAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCTCAATCTGTAAGCTTCTACCTGGAAATTGTGCTTAATTTTTTAACCACAATTCATCATTGTTTCTGGTTTCAATTCAAGTGTTCGCAGTTCCTGATTTTAGATTCATTGCCTTTGTTGAATTGTCGTGCACAGAGATGAGTTAGATTTGGATTTCATCATTTCACATGACTAAGCCATTATCCCAAGTTTGTTCATTTTGAGATGAGGCCGAGAAAATTAGGATGCATCTTTTAATGCTATCAAACAAGAAGCTTTCTTGGGTTTGGTTGTCTCTGACGAATTTGTATTTTGATTGATGAGATCACATTGTCTAACGTTGGCTGCTCTACTAGATTTGTTTGGTATTGCCCTTTTCCTATTTGCACCACCCACTATGTCTGATCAGTACCCTTTGTTGGATAGAAAGTTGAAGAAGGGGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAGCAATCCGCCGAGAAAATATTGAAAAATCAGGGGGAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATCATACAGCCTTTAA

mRNA sequence

CTCCTTTTAGCTTCTTGCTTCCCTCTGATCTTAGGGTTTTCATTGTCAATCTTCGCGGCTTTATTTATCGGCGATGGCGAAGAACAGGAATAAGAAGAAGAAGGGAAGTGGAGCTATTTCAATGGACATAACCGAAAAATTCTGTTCACGAGCTCCCTCAAGATCACATTGTCTAACGTTGGCTGCTCTACTAGATTTGTTTGGTATTGCCCTTTTCCTATTTGCACCACCCACTATGTCTGATCAGTACCCTTTGTTGGATAGAAAGTTGAAGAAGGGGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAGCAATCCGCCGAGAAAATATTGAAAAATCAGGGGGAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATCATACAGCCTTTAA

Coding sequence (CDS)

ATGGCGAAGAACAGGAATAAGAAGAAGAAGGGAAGTGGAGCTATTTCAATGGACATAACCGAAAAATTCTGTTCACGAGCTCCCTCAAGATCACATTGTCTAACGTTGGCTGCTCTACTAGATTTGTTTGGTATTGCCCTTTTCCTATTTGCACCACCCACTATGTCTGATCAGTACCCTTTGTTGGATAGAAAGTTGAAGAAGGGGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAGCAATCCGCCGAGAAAATATTGAAAAATCAGGGGGAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATCATACAGCCTTTAA

Protein sequence

MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISKTEQSAEKILKNQGETTRIHSAKTLYESYSL

Homology

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BLAST of Carg00035 vs. NCBI nr
Match: XP_023538255.1 (uncharacterized protein LOC111799087 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 71/117 (60.68%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKNRNKKKKGSGAISMDITE      P        A      G                
Sbjct: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVSESAVHKPASG---------------- 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGETTRIHSAKTLYE 114
            L+ KLKKGGR MKRSKNVRKT    KAISK+EQSAEKILKNQG+TTRIHSAKTLYE
Sbjct: 61  ALNLKLKKGGRLMKRSKNVRKTKAMAKAISKSEQSAEKILKNQGKTTRIHSAKTLYE 101

[Close]

BLAST of Carg00035 vs. NCBI nr
Match: XP_008452291.1 (PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 4.1e-15
Identity = 65/117 (55.56%), Postives = 72/117 (61.54%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKNRNKKK+G GA+SMD+TE      P                 A+ + A         
Sbjct: 1   MAKNRNKKKRG-GAVSMDVTENSVHELPQ----------------AMDVSASTVHKPASG 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGETTRIHSAKTLYE 114
            LD KLKK GRPMKRSKNVRKT    KAISK+EQS EKILKNQ +TTRI SAKTLYE
Sbjct: 61  ALDLKLKK-GRPMKRSKNVRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]

BLAST of Carg00035 vs. NCBI nr
Match: XP_004149295.1 (PREDICTED: uncharacterized protein LOC101207037 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 8.5e-13
Identity = 61/117 (52.14%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKNRNKK+  SGA+SMD+TE      P                 A+ +           
Sbjct: 1   MAKNRNKKR--SGAVSMDVTENSVQELPQ----------------AMDVSMSSVHKPASG 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGETTRIHSAKTLYE 114
            LD KLKK GRPMKR+KNVRKT    KAISK+EQS EKILKN  +TTRI SAKTLYE
Sbjct: 61  ALDLKLKK-GRPMKRTKNVRKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE 98

[Close]

BLAST of Carg00035 vs. NCBI nr
Match: XP_004487664.1 (PREDICTED: uncharacterized protein LOC101502061 [Cicer arietinum])

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 55/117 (47.01%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKNRNKK K +G +SMD T+ F S AP         A+     +A    A  T      
Sbjct: 1   MAKNRNKKNK-NGTVSMDTTDTFVSEAPQ--------AMDTSESVAKIKVAAST------ 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKTKAISK----TEQSAEKILKNQGETTRIHSAKTLYE 114
             + K+K+ GRPMKRSKNVRK KAI+K     E+S EKI KN  + +R+ SAKTLYE
Sbjct: 61  --NLKIKQNGRPMKRSKNVRKVKAIAKAISANEKSVEKISKNDNKKSRVQSAKTLYE 100

[Close]

BLAST of Carg00035 vs. NCBI nr
Match: GAU32731.1 (hypothetical protein TSUD_101520 [Trifolium subterraneum])

HSP 1 Score: 73.9 bits (180), Expect = 3.9e-10
Identity = 53/117 (45.30%), Postives = 67/117 (57.26%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKNRNKKKK +GA+SMD T+   S AP         A + + G                
Sbjct: 1   MAKNRNKKKK-NGAVSMDTTDVIVSEAPQAMDTSESVAKIKVAGAT-------------- 60

Query: 61  LLDRKLKKGGRPMKRSKNVRK----TKAISKTEQSAEKILKNQGETTRIHSAKTLYE 114
             + K+K+ GRPMKRSKNVRK     KAIS  E+SAEK+ K+  + +R+ SAKTLYE
Sbjct: 61  --NLKVKQNGRPMKRSKNVRKMKKIAKAISANEKSAEKVSKHDNKKSRVLSAKTLYE 100

[Close]

BLAST of Carg00035 vs. TrEMBL
Match: tr|A0A1S3BUB2|A0A1S3BUB2_CUCME (uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 65/117 (55.56%), Postives = 72/117 (61.54%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKNRNKKK+G GA+SMD+TE      P                 A+ + A         
Sbjct: 1   MAKNRNKKKRG-GAVSMDVTENSVHELPQ----------------AMDVSASTVHKPASG 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGETTRIHSAKTLYE 114
            LD KLKK GRPMKRSKNVRKT    KAISK+EQS EKILKNQ +TTRI SAKTLYE
Sbjct: 61  ALDLKLKK-GRPMKRSKNVRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]

BLAST of Carg00035 vs. TrEMBL
Match: tr|A0A1S2XDI5|A0A1S2XDI5_CICAR (uncharacterized protein LOC101502061 OS=Cicer arietinum OX=3827 GN=LOC101502061 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 55/117 (47.01%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKNRNKK K +G +SMD T+ F S AP         A+     +A    A  T      
Sbjct: 1   MAKNRNKKNK-NGTVSMDTTDTFVSEAPQ--------AMDTSESVAKIKVAAST------ 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKTKAISK----TEQSAEKILKNQGETTRIHSAKTLYE 114
             + K+K+ GRPMKRSKNVRK KAI+K     E+S EKI KN  + +R+ SAKTLYE
Sbjct: 61  --NLKIKQNGRPMKRSKNVRKVKAIAKAISANEKSVEKISKNDNKKSRVQSAKTLYE 100

[Close]

BLAST of Carg00035 vs. TrEMBL
Match: tr|I1M3D9|I1M3D9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100790442 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-09
Identity = 48/117 (41.03%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCSRAPSRSHCLTLAALLDLFGIALFLFAPPTMSDQYP 60
           MAKNRN KKK +G +SMD T+   S  P          L  + G  +             
Sbjct: 1   MAKNRNNKKKRNGVVSMDTTDASVSEQPQAMDTSESGVLNTVSGATIM------------ 60

Query: 61  LLDRKLKKGGRPMKRSKNVRKTKAISK----TEQSAEKILKNQGETTRIHSAKTLYE 114
               K+K+ GRPMKRSKNVRK KA++K     E+S  K+ KN+ +  R+ SAKTLYE
Sbjct: 61  ----KMKQKGRPMKRSKNVRKMKAVAKAVSANEKSVAKLSKNESKKNRVQSAKTLYE 101

[Close]

BLAST of Carg00035 vs. TrEMBL
Match: tr|A0A1S3TDV5|A0A1S3TDV5_VIGRR (uncharacterized protein LOC106754451 isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106754451 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-09
Identity = 56/120 (46.67%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 1   MAKNRNKKKKGSGAISMDITEKFCS---RAPSRSHCLTLAALLDLFGIALFLFAPPTMSD 60
           MAKNRNKKK+ +G +SMD TE   S   +A   S      A+     I L L    T   
Sbjct: 1   MAKNRNKKKR-NGVVSMDTTEASVSEQTQAMDTSESRVQNAVSGATNILLQLSPGITF-- 60

Query: 61  QYPLLDRKLKKGGRPMKRSKNVRKTKAISK----TEQSAEKILKNQGETTRIHSAKTLYE 114
            +    RKLK+ GRPMKRSKNVRK KAI+K     E+S EK+ KN+ + +R+ SAK+LYE
Sbjct: 61  -FLCNRRKLKQKGRPMKRSKNVRKMKAIAKAVSANEKSIEKVSKNENKRSRVKSAKSLYE 116

[Close]

BLAST of Carg00035 vs. TrEMBL
Match: tr|A0A0A0L355|A0A0A0L355_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099690 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.4e-09
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 62  LDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGETTRIHSAKTLYE 114
           LD KLKK GRPMKR+KNVRKT    KAISK+EQS EKILKN  +TTRI SAKTLYE
Sbjct: 16  LDLKLKK-GRPMKRTKNVRKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE 70

The following BLAST results are available for this feature:

BLAST of Carg00035 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538255.1	2.1e-19	60.68	uncharacterized protein LOC111799087 [Cucurbita pepo subsp. pepo]	[more]
XP_008452291.1	4.1e-15	55.56	PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo]	[more]
XP_004149295.1	8.5e-13	52.14	PREDICTED: uncharacterized protein LOC101207037 [Cucumis sativus]	[more]
XP_004487664.1	2.3e-10	47.01	PREDICTED: uncharacterized protein LOC101502061 [Cicer arietinum]	[more]
GAU32731.1	3.9e-10	45.30	hypothetical protein TSUD_101520 [Trifolium subterraneum]	[more]

BLAST of Carg00035 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg00035 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00035 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BUB2\|A0A1S3BUB2_CUCME	2.7e-15	55.56	uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=...	[more]
tr\|A0A1S2XDI5\|A0A1S2XDI5_CICAR	1.5e-10	47.01	uncharacterized protein LOC101502061 OS=Cicer arietinum OX=3827 GN=LOC101502061 ...	[more]
tr\|I1M3D9\|I1M3D9_SOYBN	2.9e-09	41.03	Uncharacterized protein OS=Glycine max OX=3847 GN=100790442 PE=4 SV=1	[more]
tr\|A0A1S3TDV5\|A0A1S3TDV5_VIGRR	4.9e-09	46.67	uncharacterized protein LOC106754451 isoform X1 OS=Vigna radiata var. radiata OX...	[more]
tr\|A0A0A0L355\|A0A0A0L355_CUCSA	8.4e-09	76.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099690 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00035-RA	Carg00035-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..90
None	No IPR available	PANTHER	PTHR36385	FAMILY NOT NAMED	coord: 1..113

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00035	Csa3G099690	Cucumber (Chinese Long) v2	carcuB0684
Carg00035	MELO3C016554	Melon (DHL92) v3.5.1	carmeB0670
Carg00035	ClCG10G006500	Watermelon (Charleston Gray)	carwcgB0641
Carg00035	CSPI03G05860	Wild cucumber (PI 183967)	carcpiB0696
Carg00035	Cucsa.074480	Cucumber (Gy14) v1	carcgyB0740
Carg00035	CmaCh04G009170	Cucurbita maxima (Rimu)	carcmaB0948
Carg00035	CmaCh16G008070	Cucurbita maxima (Rimu)	carcmaB0946
Carg00035	CmoCh04G009850	Cucurbita moschata (Rifu)	carcmoB0923
Carg00035	Lsi05G006870	Bottle gourd (USVL1VR-Ls)	carlsiB616
Carg00035	Cp4.1LG14g00160	Cucurbita pepo (Zucchini)	carcpeB0937
Carg00035	CsGy3G005980	Cucumber (Gy14) v2	carcgybB0659
Carg00035	MELO3C016554.2	Melon (DHL92) v3.6.1	carmedB0683
Carg00035	CsaV3_3G005960	Cucumber (Chinese Long) v3	carcucB0698
Carg00035	Cla97C10G190450	Watermelon (97103) v2	carwmbB0686

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg00035	Carg24075	Silver-seed gourd	carcarB255

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00035	Wax gourd	carwgoB0779
Carg00035	Cucurbita moschata (Rifu)	carcmoB0920
Carg00035	Cucurbita pepo (Zucchini)	carcpeB0938
Carg00035	Bottle gourd (USVL1VR-Ls)	carlsiB613
Carg00035	Watermelon (97103) v1	carwmB0664
Carg00035	Watermelon (97103) v2	carwmbB0698