CmoCh04G009850 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G009850
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(AT4g27380/M4I22_190) (At4g27380/M4I22_190)
LocationCmo_Chr04 : 4980276 .. 4982364 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGGGTTTTCATTGTCAATCTTCGCGGCTTTATTTATCGGCGATGGCGAAGAACAGGAATAAGAAGAAGGGAAGTGGAGCTATTTCAATGGACATAACCCAAAATTCTGTTCACGAGCTCCCTCAAGGTACATTTCAGTTATGTGAAAAGGGATTGAACTTAACAGTATCAGAAAGAATGAGAATTTATCTTCCAGATGTTTTTACTTGTCGTTTCTTGTCCATTGCCCCCCTTTAAGATGTTTTAGATCTCTTTAAGATGTTTTAGATCTCCCGTGTTTTCATAGAGTAGTTTTCAAGTTTAACTAAGTGATTTCCCCCTTGAATTTAAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCTCAATCTGTAAGCTTCTACCTGGAAATTGTGCTTAATTTTTTAACCACAATTCATCATTGTTTCTGGTTTCATTTCAAGTGTTCGCAGTTCCTGATTTTAGATTCATTGCCTTTGTTGAATTGTTGTGCACAGAGATGAGTTAGATTTGGATTTCATCCTTTCACATGACTAAGCCATTATCCCAAGTTTGTTCATTTTGAGATGAGGCCGAGAAAATTAGGATGCATCTTTTAATGCTATCAAACAAGAAGCTTTCTTGGGTTTGGTTGTCTCTGACGAATTTGTATTTTGATTGATGAGATCACATTGTCTAACGTTGGCTGCTCTACTAGATTTGTTTGGTATTGCCCTTTTCCTATTTGCACCACCCACTATGTCTGATCAGTACCCTTTGTTGGATAGAAAGTTGAAGAAGGGGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAGCAATCCGCCGAGAAAATATTGAAAAATCAGGGGAAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATGATACAGCCTTTAACTTAGAAAATTGATTTATTTCTGTTCCCTTCATAGGTTTTTATGTTATTTACTTCGTCCCACAAAGTGTGTCAACCCTGCAAATTCCGAGTCCTAGTCACTTGAGAAATCCATGTCTGAAAACCGGCCTAATTCCAGCGAGCTTCAAGAAAGATCCATAGGAGTCCAAAGGCCCAACCAGACCCATCCAAGCTTTTAGTTCTCGATCAAAGATGACTCTTTCCATTACTGCTACTGTATCTTTTCTAAGAGAAAGGTTGTAAATTTCAGGAAACGCGAGAGTTCCCACTCCACACGCTCTTCCAAAAACTAATCCTCTGTCTATCTCCAGCTTCGGTAAATCTATGAATACCTTCCATGCTTATTGAAGATTTGGATTTACCTTTGGACTTGAGGGATTTCAAGGCCTTCTCTCTGCCCTCTGCCGTAAAACAAATGTGAAAGATGTTGACTATTTACTCTTTTGCATCAAAGATGTGCTCCCCTTTAGCACAAAGAGCTTCAATATTATCCTCAATCGATCTCATAGAAACGTCGCTTTGGCCTGTTATGTATTGTCCCAGCCTCTCAATTTTAAAATTGCTTTCGCCGGTTACATATTAGTGTTACTTATGGTTATTATGGACCTCACAATCCACCCTTTTGAGGTGTGAGAGAAGTTTCCACACCTTAAAAGAATGTTTCGATGTTCCTCTCTAATCGATGTGGGACTTCACAATCTTGGGGGCTAGCGTCCATTTTGTCTAACTTTGATATCATTTGTAACAATCCAAGTCTACCACTAGCATATATTGTCCACTTTGGCCCGTTACATATCATCATTAGTCTTGCCGTACTAAAACTTATCCACAAATGAATTTTTCCTCCATTTTTCCATTGGGAGGTAAGATCTCACACCTTCAAATGTAGAGATTATGAATGCAAACTAAGATAACTCACATAATTGATGATAAGGCTATGTGTCTCTCCTTCAAATCTAATCCTTTTCCATATTTTTGTGTGTTTTATTTGGCCTCACTCTCTTTATTTTCATCCGGATAACCTCCACCGCCTTAAATCTCACCATAGCTTAGCTGCTACCGACTAGGCTTTGCGTTTCCATTTCTCATTTAAAACTCTCTCTCCTGGCCATTTTAAATTTTTA

mRNA sequence

TAGGGTTTTCATTGTCAATCTTCGCGGCTTTATTTATCGGCGATGGCGAAGAACAGGAATAAGAAGAAGGGAAGTGGAGCTATTTCAATGGACATAACCCAAAATTCTGTTCACGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCTCAATCTAAAGTTGAAGAAGGGGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAGCAATCCGCCGAGAAAATATTGAAAAATCAGGGGAAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATGATACAGCCTTTAACTTAGAAAATTGATTTATTTCTGTTCCCTTCATAGGTTTTTATGTTATTTACTTCGTCCCACAAAGTGTGTCAACCCTGCAAATTCCGAGTCCTAGTCACTTGAGAAATCCATGTCTGAAAACCGGCCTAATTCCAGCGAGCTTCAAGAAAGATCCATAGGAGTCCAAAGGCCCAACCAGACCCATCCAAGCTTTTAGTTCTCGATCAAAGATGACTCTTTCCATTACTGCTACTGTATCTTTTCTAAGAGAAAGGTTGTAAATTTCAGGAAACGCGAGAGTTCCCACTCCACACGCTCTTCCAAAAACTAATCCTCTGTCTATCTCCAGCTTCGGTAAATCTATGAATACCTTCCATGCTTATTGAAGATTTGGATTTACCTTTGGACTTGAGGGATTTCAAGGCCTTCTCTCTGCCCTCTGCCGTAAAACAAATGTGAAAGATGTTGACTATTTACTCTTTTGCATCAAAGATGTGCTCCCCTTTAGCACAAAGAGCTTCAATATTATCCTCAATCGATCTCATAGAAACGTCGCTTTGGCCTGTTATGTATTGTCCCAGCCTCTCAATTTTAAAATTGCTTTCGCCGGTTACATATTAGTGTTACTTATGGTTATTATGGACCTCACAATCCACCCTTTTGAGGTGTGAGAGAAGTTTCCACACCTTAAAAGAATGTTTCGATGTTCCTCTCTAATCGATGTGGGACTTCACAATCTTGGGGGCTAGCGTCCATTTTGTCTAACTTTGATATCATTTGTAACAATCCAAGTCTACCACTAGCATATATTGTCCACTTTGGCCCGTTACATATCATCATTAGTCTTGCCGTACTAAAACTTATCCACAAATGAATTTTTCCTCCATTTTTCCATTGGGAGGTAAGATCTCACACCTTCAAATGTAGAGATTATGAATGCAAACTAAGATAACTCACATAATTGATGATAAGGCTATGTGTCTCTCCTTCAAATCTAATCCTTTTCCATATTTTTGTGTGTTTTATTTGGCCTCACTCTCTTTATTTTCATCCGGATAACCTCCACCGCCTTAAATCTCACCATAGCTTAGCTGCTACCGACTAGGCTTTGCGTTTCCATTTCTCATTTAAAACTCTCTCTCCTGGCCATTTTAAATTTTTA

Coding sequence (CDS)

ATGGCGAAGAACAGGAATAAGAAGAAGGGAAGTGGAGCTATTTCAATGGACATAACCCAAAATTCTGTTCACGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCTCAATCTAAAGTTGAAGAAGGGGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAGCAATCCGCCGAGAAAATATTGAAAAATCAGGGGAAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATGA
BLAST of CmoCh04G009850 vs. TrEMBL
Match: A0A0S3SI95_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G123700 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 61/100 (61.00%), Postives = 73/100 (73.00%), Query Frame = 1

Query: 1   MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSK 60
           MAKNRN KK +G +SMD T  SV E PQAMD SES V    SGA N+K+K+ GRPMKRSK
Sbjct: 1   MAKNRNNKKRNGVVSMDTTDASVSEQPQAMDTSESRVQNAVSGATNMKMKQKGRPMKRSK 60

Query: 61  NVRKTKAISK----TEQSAEKILKNQGKTTRIHSAKTLYE 97
           NVRK KAI+K     E+S EK+ KN+ K +R+ SAK+LYE
Sbjct: 61  NVRKMKAIAKAVSSNEKSIEKVSKNENKRSRVKSAKSLYE 100

BLAST of CmoCh04G009850 vs. TrEMBL
Match: A0A0L9ULU8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g128100 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 61/100 (61.00%), Postives = 73/100 (73.00%), Query Frame = 1

Query: 1   MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSK 60
           MAKNRN KK +G +SMD T  SV E PQAMD SES V    SGA N+K+K+ GRPMKRSK
Sbjct: 1   MAKNRNNKKRNGVVSMDTTDASVSEQPQAMDTSESRVQNAVSGATNMKMKQKGRPMKRSK 60

Query: 61  NVRKTKAISK----TEQSAEKILKNQGKTTRIHSAKTLYE 97
           NVRK KAI+K     E+S EK+ KN+ K +R+ SAK+LYE
Sbjct: 61  NVRKMKAIAKAVSSNEKSIEKVSKNENKRSRVKSAKSLYE 100

BLAST of CmoCh04G009850 vs. TrEMBL
Match: A0A0B2R2V9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_007752 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 63/101 (62.38%), Postives = 74/101 (73.27%), Query Frame = 1

Query: 1   MAKNRN-KKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRS 60
           MAKNRN KKK +G +SMD T  SV E  QAMD SES V   ASGA N+K+K+ GRPMKRS
Sbjct: 1   MAKNRNNKKKRNGVVSMDTTDASVSEQSQAMDTSESGVLNTASGATNMKMKQKGRPMKRS 60

Query: 61  KNVRKTKAISK----TEQSAEKILKNQGKTTRIHSAKTLYE 97
           KNVRK KAI+K     E+S EK+ KN+ K +R+ SAKTLYE
Sbjct: 61  KNVRKMKAIAKALSANEKSIEKLSKNESKKSRVQSAKTLYE 101

BLAST of CmoCh04G009850 vs. TrEMBL
Match: I1LUW2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G219500 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 63/101 (62.38%), Postives = 74/101 (73.27%), Query Frame = 1

Query: 1   MAKNRN-KKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRS 60
           MAKNRN KKK +G +SMD T  SV E  QAMD SES V   ASGA N+K+K+ GRPMKRS
Sbjct: 1   MAKNRNNKKKRNGVVSMDTTDASVSEQSQAMDTSESGVLNTASGATNMKMKQKGRPMKRS 60

Query: 61  KNVRKTKAISK----TEQSAEKILKNQGKTTRIHSAKTLYE 97
           KNVRK KAI+K     E+S EK+ KN+ K +R+ SAKTLYE
Sbjct: 61  KNVRKMKAIAKALSANEKSIEKLSKNESKKSRVQSAKTLYE 101

BLAST of CmoCh04G009850 vs. TrEMBL
Match: A0A0B2RWH5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_001509 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-19
Identity = 60/101 (59.41%), Postives = 73/101 (72.28%), Query Frame = 1

Query: 1   MAKNRN-KKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRS 60
           MAKNRN KKK +G +SMD T  SV E PQAMD+SES V    +GA N+K+K+ GRPMKRS
Sbjct: 1   MAKNRNNKKKRNGVVSMDTTDASVSEQPQAMDISESGVLNTVTGATNMKMKQKGRPMKRS 60

Query: 61  KNVRKTKAISK----TEQSAEKILKNQGKTTRIHSAKTLYE 97
           KNVRK KA++K     E+S  K+ KN+ K  R+ SAKTLYE
Sbjct: 61  KNVRKMKAVAKAVSANEKSVAKLSKNESKKNRVQSAKTLYE 101

BLAST of CmoCh04G009850 vs. NCBI nr
Match: gi|659102744|ref|XP_008452291.1| (PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-32
Identity = 83/100 (83.00%), Postives = 88/100 (88.00%), Query Frame = 1

Query: 1  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSK 60
          MAKNRNKKK  GA+SMD+T+NSVHELPQAMDVS S VHKPASGAL+LKLKK GRPMKRSK
Sbjct: 1  MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDLKLKK-GRPMKRSK 60

Query: 61 NVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE 97
          NVRKT    KAISK+EQS EKILKNQ KTTRI SAKTLYE
Sbjct: 61 NVRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

BLAST of CmoCh04G009850 vs. NCBI nr
Match: gi|449463146|ref|XP_004149295.1| (PREDICTED: uncharacterized protein LOC101207037 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 4.7e-29
Identity = 80/100 (80.00%), Postives = 88/100 (88.00%), Query Frame = 1

Query: 1  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSK 60
          MAKNRNKK+ SGA+SMD+T+NSV ELPQAMDVS S+VHKPASGAL+LKLKK GRPMKR+K
Sbjct: 1  MAKNRNKKR-SGAVSMDVTENSVQELPQAMDVSMSSVHKPASGALDLKLKK-GRPMKRTK 60

Query: 61 NVRKT----KAISKTEQSAEKILKNQGKTTRIHSAKTLYE 97
          NVRKT    KAISK+EQS EKILKN  KTTRI SAKTLYE
Sbjct: 61 NVRKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE 98

BLAST of CmoCh04G009850 vs. NCBI nr
Match: gi|802586103|ref|XP_012070657.1| (PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas])

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-21
Identity = 64/100 (64.00%), Postives = 76/100 (76.00%), Query Frame = 1

Query: 1  MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSK 60
          MAKNRNKKK +GA+SMDI++ +V +L QAMD SES   KPASG L  K+K  GRPMKRSK
Sbjct: 1  MAKNRNKKKKNGAVSMDISEPTVSDLSQAMDTSESVAQKPASGVLTRKVK--GRPMKRSK 60

Query: 61 NVRKTKAI----SKTEQSAEKILKNQGKTTRIHSAKTLYE 97
          NVRKTKAI    SK E+S EK+LK++ KT R  SAK LY+
Sbjct: 61 NVRKTKAIAKAVSKNEKSVEKVLKHENKTARTQSAKLLYD 98

BLAST of CmoCh04G009850 vs. NCBI nr
Match: gi|951072929|ref|XP_014491951.1| (PREDICTED: uncharacterized protein LOC106754451 isoform X2 [Vigna radiata var. radiata])

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-20
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query: 1   MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSK 60
           MAKNRNKKK +G +SMD T+ SV E  QAMD SES V    SGA N+KLK+ GRPMKRSK
Sbjct: 1   MAKNRNKKKRNGVVSMDTTEASVSEQTQAMDTSESRVQNAVSGATNMKLKQKGRPMKRSK 60

Query: 61  NVRKTKAISK----TEQSAEKILKNQGKTTRIHSAKTLYE 97
           NVRK KAI+K     E+S EK+ KN+ K +R+ SAK+LYE
Sbjct: 61  NVRKMKAIAKAVSANEKSIEKVSKNENKRSRVKSAKSLYE 100

BLAST of CmoCh04G009850 vs. NCBI nr
Match: gi|920700451|gb|KOM43676.1| (hypothetical protein LR48_Vigan05g128100 [Vigna angularis])

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 61/100 (61.00%), Postives = 73/100 (73.00%), Query Frame = 1

Query: 1   MAKNRNKKKGSGAISMDITQNSVHELPQAMDVSESAVHKPASGALNLKLKKGGRPMKRSK 60
           MAKNRN KK +G +SMD T  SV E PQAMD SES V    SGA N+K+K+ GRPMKRSK
Sbjct: 1   MAKNRNNKKRNGVVSMDTTDASVSEQPQAMDTSESRVQNAVSGATNMKMKQKGRPMKRSK 60

Query: 61  NVRKTKAISK----TEQSAEKILKNQGKTTRIHSAKTLYE 97
           NVRK KAI+K     E+S EK+ KN+ K +R+ SAK+LYE
Sbjct: 61  NVRKMKAIAKAVSSNEKSIEKVSKNENKRSRVKSAKSLYE 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0S3SI95_PHAAN1.2e-2061.00Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G123700 PE=... [more]
A0A0L9ULU8_PHAAN1.2e-2061.00Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g128100 PE=4 SV=1[more]
A0A0B2R2V9_GLYSO1.4e-1962.38Uncharacterized protein OS=Glycine soja GN=glysoja_007752 PE=4 SV=1[more]
I1LUW2_SOYBN1.4e-1962.38Uncharacterized protein OS=Glycine max GN=GLYMA_12G219500 PE=4 SV=1[more]
A0A0B2RWH5_GLYSO3.0e-1959.41Uncharacterized protein OS=Glycine soja GN=glysoja_001509 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659102744|ref|XP_008452291.1|5.9e-3283.00PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo][more]
gi|449463146|ref|XP_004149295.1|4.7e-2980.00PREDICTED: uncharacterized protein LOC101207037 [Cucumis sativus][more]
gi|802586103|ref|XP_012070657.1|4.7e-2164.00PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas][more]
gi|951072929|ref|XP_014491951.1|1.4e-2062.00PREDICTED: uncharacterized protein LOC106754451 isoform X2 [Vigna radiata var. r... [more]
gi|920700451|gb|KOM43676.1|1.8e-2061.00hypothetical protein LR48_Vigan05g128100 [Vigna angularis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0017004 cytochrome complex assembly
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0005575 cellular_component
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009523 photosystem II
molecular_function GO:0003674 molecular_function
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005198 structural molecule activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G009850.1CmoCh04G009850.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36385FAMILY NOT NAMEDcoord: 2..96
score: 2.1