Carg24075 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24075
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Stress response protein
Location	Cucurbita_argyrosperma_scaffold_217 : 101271 .. 103529 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATTCGACTCTACAGCTTCTGGCCGGTGAGGCTTCTTCTCGCTTCTTGCATTTTTCTTCCTTAGGGTTTTCGTTGTTAGTCTCCTCAGCGCTTATCTCTCAGCGATGGCGAAGAACAAGAATAAGAAGAAGCGAAGTGGGGCTATTTCAATGGACATAACCGAAAATACCGCTCAAGAGCTCCCTCAAGGTACGTTTGAGTTGTTTGAGAAAGGATTGTTGATAGTATTATCGGATAGATTCAGAATTGTATCCTCCAGATGTTTGTACTTGTCCTTATTTCTTTACTGATCCTCTTTAAAATGTTTCAGAACTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAATATATGTTTTCTTTGAGTAGTTTTGAAATTTTAACTTATTTCCGCTTGAATCTGTAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCTCAATCTGTAAGCTTCTACCTGGGAATTGTGGTTTATTCTTTAATTTCATGGTCTGGGACGTAGTTTCACTTTAACTCCAATTCCATTCTGCGCTTTTGTTGTTTTTTGTTTTTAATTCGTGTGCTCTCAGTTCCTGATTTTTGTTATGATTGGCCCAAATTTGTTCATTTTCGGATGAGGCTGAAAAATTAGGGGTGATATTATAAAGGGCATAACTTCTCTGATTAGAGTTAATTGAGCATCTTACCACAAAAAGTAGTGAATCAACTCCCAGAAAACTTTTGATTCCATACTGCTACCTTTCATATGTAGCCACATTACTACTGATTATTATTATTATAATTGGTGGGTCGCTTATAACTTTAAATGCTTAGCTACATGGCTAATAATTAGTGAAAACAGTGCGAGGAATACGTCTTGGAAAGGGTAAATGAGGGAAAACCTTCTATGGTCTATCTTGATAACCTTGTTCAACTTTTTTCATTGAAATTCTATTTTTTATGCCGTTTTTCTCATTAGATGTGTATGTACCTGAGTGTGTAGAGTATTTTTCATGTATTTATATTTTCAAAATAACACCATGATAATTTTAATACACTTGAGGAGTACTTTACTCTTGGTTTCCTTCAAGAACATTTACTACAGTAGTAGGAAGCATCTTATGCACCCCTTTGATTCGTTTCTAGCCACCAAACTTATTAATATAAACAACTGTTAGGCCCCCAATTGTAAATGTTTATACTTGAGAGGGTAAAAGGGTAAAGTGGGAGAGTAGGAAGGAGGGGAGGAAGATCAGTTTTCTTGGGACTTGTAGAGCGTTTTCGGGAGCGAGACAACCCTTTCGAATTGACTGAACTTTGAATGGTGACATTGTCACTTGTTTATCTTTCCTATATTAGTAAAATGTAAAATGTAAAATGTAAAATGGTACTATTGGTTTCTGTTGTATTGAATACGATGCTTTTCAAATGAAAATGAACGTGTGCATGTAAATTGGTATGATGCTCAATTTGTTAATGCCTTGAAGAAGATTATGATTGAAACCCTCCCATGTTTTCAAAGATTATTGGCATTTGACCTATAATTTGCTGAATCCCAGTCAATTACCTGGGGAATGGTTGGATAGTATGCATCTGTTAGTACTAACCAAACAAGACAATTCCTTGGGTTTTGATAGTATGCATTGCTGTTTAACTTTGGTTGTCATGGAAATTTGAAGCCACCTTTTCCCTGTTTGGGCCACAGACTCTGATCATTACTCATTGTTGTGACAGAAAATTGAAAAAGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAGACAATGGCGAAAGCAAAGGCCATATCCAAGAACGAGCAGTCAGCGGAGAAAATATTGAAAAATCAGAGCAAAACTACAAGAATACATTCTGCAAAAACATTGTATGAATGATAGAAATGTGGGTTTAAATTGTAAAATTGTTTTATTTTTGTTCCTTTAATAGATGTTTATGGTACCTATCACTCATCATTTAGTGTCTCAATCCTGCAACTTCTAAGTTTCAAGTCACTTGTGAAATCCAAGCTATTCGCACAAATTTGTTTTAGAAAAGGAATTGTCTACTTGTGTAAGTCTATCGTCACTAGCAGGTGGCAATAGCATTAGGAGCTGGAAATTCTTATTCCTTCTTTGGACCACTCAGGTATTACACAAATCCTTATAGACGGAGTTCAAATGAGATCAAATCGCGTATTAATCTTTTTAACAAATTTAGTTTGTGATCTAGTCTTATACAAATTTA

mRNA sequence

AATATTCGACTCTACAGCTTCTGGCCGGTGAGGCTTCTTCTCGCTTCTTGCATTTTTCTTCCTTAGGGTTTTCGTTGTTAGTCTCCTCAGCGCTTATCTCTCAGCGATGGCGAAGAACAAGAATAAGAAGAAGCGAAGTGGGGCTATTTCAATGGACATAACCGAAAATACCGCTCAAGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCTCAATCTAAAATTGAAAAAGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAGACAATGGCGAAAGCAAAGGCCATATCCAAGAACGAGCAGTCAGCGGAGAAAATATTGAAAAATCAGAGCAAAACTACAAGAATACATTCTGCAAAAACATTGTATGAATGATAGAAATGTGGGTTTAAATTGTAAAATTGTTTTATTTTTGTTCCTTTAATAGATGTTTATGGTACCTATCACTCATCATTTAGTGTCTCAATCCTGCAACTTCTAAGTTTCAAGTCACTTGTGAAATCCAAGCTATTCGCACAAATTTGTTTTAGAAAAGGAATTGTCTACTTGTGTAAGTCTATCGTCACTAGCAGGTGGCAATAGCATTAGGAGCTGGAAATTCTTATTCCTTCTTTGGACCACTCAGGTATTACACAAATCCTTATAGACGGAGTTCAAATGAGATCAAATCGCGTATTAATCTTTTTAACAAATTTAGTTTGTGATCTAGTCTTATACAAATTTA

Coding sequence (CDS)

ATGGCGAAGAACAAGAATAAGAAGAAGCGAAGTGGGGCTATTTCAATGGACATAACCGAAAATACCGCTCAAGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCTCAATCTAAAATTGAAAAAGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAGACAATGGCGAAAGCAAAGGCCATATCCAAGAACGAGCAGTCAGCGGAGAAAATATTGAAAAATCAGAGCAAAACTACAAGAATACATTCTGCAAAAACATTGTATGAATGA

Protein sequence

MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE

Homology

[Close]

BLAST of Carg24075 vs. NCBI nr
Match: XP_022929206.1 (uncharacterized protein LOC111435867 [Cucurbita moschata])

HSP 1 Score: 134.0 bits (336), Expect = 2.7e-28
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN
Sbjct: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTXXXXXXXXXXXXXXXXXXXXXXXXTRIHSAKTLYE 100
           VRKTXXXXXXXXXXXXXXXXXXXXXXXXTRIHSAKTLYE
Sbjct: 61  VRKTXXXXXXXXXXXXXXXXXXXXXXXXTRIHSAKTLYE 99

[Close]

BLAST of Carg24075 vs. NCBI nr
Match: XP_022985277.1 (uncharacterized protein LOC111483316 [Cucurbita maxima])

HSP 1 Score: 125.9 bits (315), Expect = 7.4e-26
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKNKN KKRSGAISMDITENTA ELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN
Sbjct: 1   MAKNKN-KKRSGAISMDITENTAHELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTXXXXXXXXXXXXXXXXXXXXXXXXTRIHSAKTLYE 100
           VRKTXXXXXXXXXXXXXXXXXXXXXXXXTRIHSAKTLYE
Sbjct: 61  VRKTXXXXXXXXXXXXXXXXXXXXXXXXTRIHSAKTLYE 98

[Close]

BLAST of Carg24075 vs. NCBI nr
Match: XP_008452291.1 (PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 4.5e-23
Identity = 64/99 (64.65%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKN+NKKKR GA+SMD+TEN+  ELPQAMDVS S VHKPASGAL+LKLKKGRPMKRSKN
Sbjct: 1   MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDLKLKKGRPMKRSKN 60

Query: 61  VRKTXXXXXXXXXXXXXXXXXXXXXXXXTRIHSAKTLYE 100
           VRKT                        TRI SAKTLYE
Sbjct: 61  VRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]

BLAST of Carg24075 vs. NCBI nr
Match: XP_023538255.1 (uncharacterized protein LOC111799087 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.6 bits (283), Expect = 3.8e-22
Identity = 69/101 (68.32%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 1   MAKNKNKKKR-SGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKK-GRPMKRS 60
           MAKN+NKKK+ SGAISMDITEN+  ELPQAMDVSESAVHKPASGALNLKLKK GR MKRS
Sbjct: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVSESAVHKPASGALNLKLKKGGRLMKRS 60

Query: 61  KNVRKTXXXXXXXXXXXXXXXXXXXXXXXXTRIHSAKTLYE 100
           KNVRKT                        TRIHSAKTLYE
Sbjct: 61  KNVRKTKAMAKAISKSEQSAEKILKNQGKTTRIHSAKTLYE 101

[Close]

BLAST of Carg24075 vs. NCBI nr
Match: XP_004149295.1 (PREDICTED: uncharacterized protein LOC101207037 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 6.5e-22
Identity = 64/99 (64.65%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKN+N KKRSGA+SMD+TEN+ QELPQAMDVS S+VHKPASGAL+LKLKKGRPMKR+KN
Sbjct: 1   MAKNRN-KKRSGAVSMDVTENSVQELPQAMDVSMSSVHKPASGALDLKLKKGRPMKRTKN 60

Query: 61  VRKTXXXXXXXXXXXXXXXXXXXXXXXXTRIHSAKTLYE 100
           VRKT                        TRI SAKTLYE
Sbjct: 61  VRKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE 98

[Close]

BLAST of Carg24075 vs. TrEMBL
Match: tr|A0A1S3BUB2|A0A1S3BUB2_CUCME (uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.0e-23
Identity = 64/99 (64.65%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKN+NKKKR GA+SMD+TEN+  ELPQAMDVS S VHKPASGAL+LKLKKGRPMKRSKN
Sbjct: 1   MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDLKLKKGRPMKRSKN 60

Query: 61  VRKTXXXXXXXXXXXXXXXXXXXXXXXXTRIHSAKTLYE 100
           VRKT                        TRI SAKTLYE
Sbjct: 61  VRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]

BLAST of Carg24075 vs. TrEMBL
Match: tr|V4TXB0|V4TXB0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10010014mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 50/99 (50.51%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKN+ KKKR GA+SMD+TE T  ++PQAMD SES   KP SG LN+K KKGRPMKRSKN
Sbjct: 1   MAKNRAKKKRGGAVSMDVTEPTVSDIPQAMDTSESGALKPVSGMLNIKTKKGRPMKRSKN 60

Query: 61  VRKTXXXXXXXXXXXXXXXXXXXXXXXXTRIHSAKTLYE 100
           VRK                           + SAK+LY+
Sbjct: 61  VRKKKTIEKAISTNEKYIEKSLKNESRSLSVQSAKSLYD 99

[Close]

BLAST of Carg24075 vs. TrEMBL
Match: tr|A0A2H5PJJ0|A0A2H5PJJ0_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_142370 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 50/99 (50.51%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKN+ KKKR GA+SMD+TE T  ++PQAMD SES   KP SG LN+K KKGRPMKRSKN
Sbjct: 1   MAKNRAKKKRGGAVSMDVTEPTVSDIPQAMDTSESGALKPVSGMLNIKTKKGRPMKRSKN 60

Query: 61  VRKTXXXXXXXXXXXXXXXXXXXXXXXXTRIHSAKTLYE 100
           VRK                           + SAK+LY+
Sbjct: 61  VRKKKTIEKAISTNEKYIEKSLKNESRSLSVQSAKSLYD 99

[Close]

BLAST of Carg24075 vs. TrEMBL
Match: tr|A0A067GFN3|A0A067GFN3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034280mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 50/99 (50.51%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKN+ KKKR GA+SMD+TE T  ++PQAMD SES   KP SG LN+K KKGRPMKRSKN
Sbjct: 1   MAKNRAKKKRGGAVSMDVTEPTVSDIPQAMDTSESGALKPVSGMLNIKTKKGRPMKRSKN 60

Query: 61  VRKTXXXXXXXXXXXXXXXXXXXXXXXXTRIHSAKTLYE 100
           VRK                           + SAK+LY+
Sbjct: 61  VRKKKTIEKAISTNEKYIEKSLKNESRSLSVQSAKSLYD 99

[Close]

BLAST of Carg24075 vs. TrEMBL
Match: tr|A0A1R3KBZ2|A0A1R3KBZ2_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09480 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.7e-15
Identity = 48/99 (48.48%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60
           MAKN+ KKK++GA SMD++E T  +LPQAMD SE+ V KP SGA+ +K+KKGRPMKRSKN
Sbjct: 1   MAKNRKKKKQNGATSMDVSEGTIPDLPQAMDTSETGVSKPDSGAVKIKMKKGRPMKRSKN 60

Query: 61  VRKTXXXXXXXXXXXXXXXXXXXXXXXXTRIHSAKTLYE 100
           VR+                         +R  SAK+LY+
Sbjct: 61  VRRIKSVAKAIAKNEQYAEKTTKSESKKSRTQSAKSLYD 99

The following BLAST results are available for this feature:

BLAST of Carg24075 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929206.1	2.7e-28	100.00	uncharacterized protein LOC111435867 [Cucurbita moschata]	[more]
XP_022985277.1	7.4e-26	97.98	uncharacterized protein LOC111483316 [Cucurbita maxima]	[more]
XP_008452291.1	4.5e-23	64.65	PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo]	[more]
XP_023538255.1	3.8e-22	68.32	uncharacterized protein LOC111799087 [Cucurbita pepo subsp. pepo]	[more]
XP_004149295.1	6.5e-22	64.65	PREDICTED: uncharacterized protein LOC101207037 [Cucumis sativus]	[more]

BLAST of Carg24075 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg24075 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24075 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BUB2\|A0A1S3BUB2_CUCME	3.0e-23	64.65	uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=...	[more]
tr\|V4TXB0\|V4TXB0_9ROSI	1.7e-15	50.51	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10010014mg PE=4 ...	[more]
tr\|A0A2H5PJJ0\|A0A2H5PJJ0_CITUN	1.7e-15	50.51	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_142370 PE=4 SV=1	[more]
tr\|A0A067GFN3\|A0A067GFN3_CITSI	1.7e-15	50.51	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034280mg PE=4 SV=1	[more]
tr\|A0A1R3KBZ2\|A0A1R3KBZ2_9ROSI	8.7e-15	48.48	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09480 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24075-RA	Carg24075-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..99
None	No IPR available	PANTHER	PTHR36385	FAMILY NOT NAMED	coord: 1..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24075	Csa3G099690	Cucumber (Chinese Long) v2	carcuB0244
Carg24075	MELO3C016554	Melon (DHL92) v3.5.1	carmeB0223
Carg24075	ClCG10G006500	Watermelon (Charleston Gray)	carwcgB0212
Carg24075	CSPI03G05860	Wild cucumber (PI 183967)	carcpiB0249
Carg24075	Cucsa.074480	Cucumber (Gy14) v1	carcgyB0262
Carg24075	CmaCh04G009170	Cucurbita maxima (Rimu)	carcmaB0301
Carg24075	CmaCh16G008070	Cucurbita maxima (Rimu)	carcmaB0299
Carg24075	CmoCh04G009850	Cucurbita moschata (Rifu)	carcmoB0305
Carg24075	Lsi05G006870	Bottle gourd (USVL1VR-Ls)	carlsiB195
Carg24075	Cp4.1LG14g00160	Cucurbita pepo (Zucchini)	carcpeB0308
Carg24075	CsGy3G005980	Cucumber (Gy14) v2	carcgybB0233
Carg24075	MELO3C016554.2	Melon (DHL92) v3.6.1	carmedB0229
Carg24075	CsaV3_3G005960	Cucumber (Chinese Long) v3	carcucB0248
Carg24075	Cla97C10G190450	Watermelon (97103) v2	carwmbB0220
Carg24075	Bhi11G000601	Wax gourd	carwgoB0270

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24075	Carg00035	Silver-seed gourd	carcarB255

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24075	Cucurbita moschata (Rifu)	carcmoB0303
Carg24075	Cucurbita pepo (Zucchini)	carcpeB0309
Carg24075	Watermelon (97103) v1	carwmB0206