Cp4.1LG14g00160 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g00160
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionProtein RRP5
LocationCp4.1LG14 : 4607774 .. 4609936 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTTCAATATTCGACTACAGCTTCTGGCCGGTGAAGCTCCTTCTCGCTTCTTGCTTTTTTCTTCCTTAGGGTTTTCGTTGTTAGTCTCCTCAGCGCTTATCTCTCAGCGATGGCGAAGAACAAGAATAAGAAGAAGCGAAGTGGGGCTATTTCAATGGACATAGCCGAAAATACCGCTCAAGAGCTCCCTCAAGGTACGTTTGAGTTGTTTTAGAAGGGATTGCAGATAGTATTTTCAGATAGATTGAGAATTGTATACTCCAGATGTTTGTACTTGTCCTTATTTCTTCGTTGATCCTCTTTAAGATGTTTCAGAACTCTTTTTATTTATTATTTTTTTTTATACTATATGTTTTCTTTGAGTAGTTTTGAAATTTTAACTTATTTCCGCTTGAATCTATAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCTCAATCTGTAAGCTTCTACCTGGGAATTGTGGTTTATTCTTTAATTTCATGGCCTGGGACGTAGTTTCACTTTAACGCCAATTCCATTCTGCGCTTTTGTTGTTTTTTGTTTTTAATTCGTGTGCTCTCAGTTCCTAATCTTTGTTATGATTGGCCCAAATTCGTTCATTTTCGGATGAGGCTGAAAAATTAGGGGTGATATTATAATGGGCATAACTTCTCTGATTAGAGTAAATTGAGCATCTTACCACAAAAAGTAGTGGATTACTCCCAGGAAACTTTTGATTCCATACTGCTACCTTTCATATGTAGCCACATTACTACTGATTATTATTATTATAATTGGTGGGTCGCTTATAACTTTAAATGCTTAGCTACATGGCTAATAATTAGTGAAAACAGTGCGAGGAATACGTCTTGGAAAGGGTAAATGAGGGAAAACCTTCTATGGTCTATCTTGATGACCTTGTTCAACTTTTTTCATTGAAATTCTATTTTTTATGCCGTTCTTCTCATTAGATGTGTATGTACCTGAGTGTCCAGAGTGTTTTTCATGCATTTATATTCTCAAAATAACACCATGATAATTTTAATATACTTGAGGAGTACTTTACTCTTGGTTTCCTTCAAGAGCATTTACTACATTAGTAGGAAGCATCTTATGCACCCCTTTGATTCGTTTCTAGCCACCAAACTTACTAATATAGACAACTGTTAGGCCCCCAATTGTAAATGTTTATACTTGAGAGGGTAAAAGGGTAAAGTGGGAGAGTAGGAAGGAGGGGAGGAAGATCAGTTATCTTGGGACTTGTAGAGTGTTTTCGGGAGCGAAACAACCCTTTCAAATTGACTGAACTTTGAATGGTGACATTGTCACTTGTTTATCTTTCCTGTATTAGTAAAATGTAAAATGGTACTATTGGTTTCTGTTGTATTGAATACGATGCTTTTCAAATGAAAATGAACGTGTGCATGTAAATTGGTATGATGCTCAATTTGTTAATGCCTTGAAGATTATGGTTGAAACCCACCCATGTTTTCAAAGATTATTGGCATTTGATCTAGAATTTGCTGAATCCCAGTCAATTACCTGGGGAATGGTTGGATAGTATGCATCTGTTAATACTAACCAAACAAGACAATTCCTTGGGTTTTGATAGTATGCATTGCTGTTTAACTTTGGTTGTTATGGAAATTTGAAGCCACCTTTTCCCTGTTTGGGCCACAGACTCTGATCATTACTCATTGTTGTGACAGAAAATTGAAAAAGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAGACAATGGCGAAAGCAAAGGCCATATCCAAGAACGAGCAGTCGGCGGAGAAAATATTGAAAAATCAGAGCAAAACTACAAGAATACATTCTGCAAAAACATTGTATGAATGATAGAAATGTGGCTTTTCTTATATTTGATATGTTAAATATTGATTTAAATACTTTAAATTAAATATATTTTCCTTTTATATTTAACATTTATTGTATCAAATACATTAAATATTTATTTGAACATTATTTTAAAAAAATTATATTTGAACATTTTAAATTTTTTTAAAATTAAATTTACACTTTTAGTGTTATCATTAGTACGCACACAGACTTTATGGACCTAGTTGAATATCGGAGACAAATTGTATCCATGTAATTACTGTCTTTTCTTAATGAATTAATTATATTTTT

mRNA sequence

ATGTCTCTCCTCAGCGCTTATCTCTCAGCGATGGCGAAGAACAAGAATAAGAAGAAGCGAAGTGGGGCTATTTCAATGGACATAGCCGAAAATACCGCTCAAGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCTCAATCTAAAATTGAAAAAGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAGACAATGGCGAAAGCAAAGGCCATATCCAAGAACGAGCAGTCGGCGGAGAAAATATTGAAAAATCAGAGCAAAACTACAAGAATACATTCTGCAAAAACATTGTATGAATGATAGAAATGTGGCTTTTCTTATATTTGATATGTTAAATATTGATTTAAATACTTTAAATTAAATATATTTTCCTTTTATATTTAACATTTATTGTATCAAATACATTAAATATTTATTTGAACATTATTTTAAAAAAATTATATTTGAACATTTTAAATTTTTTTAAAATTAAATTTACACTTTTAGTGTTATCATTAGTACGCACACAGACTTTATGGACCTAGTTGAATATCGGAGACAAATTGTATCCATGTAATTACTGTCTTTTCTTAATGAATTAATTATATTTTT

Coding sequence (CDS)

ATGTCTCTCCTCAGCGCTTATCTCTCAGCGATGGCGAAGAACAAGAATAAGAAGAAGCGAAGTGGGGCTATTTCAATGGACATAGCCGAAAATACCGCTCAAGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCTCAATCTAAAATTGAAAAAGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAGACAATGGCGAAAGCAAAGGCCATATCCAAGAACGAGCAGTCGGCGGAGAAAATATTGAAAAATCAGAGCAAAACTACAAGAATACATTCTGCAAAAACATTGTATGAATGA

Protein sequence

MSLLSAYLSAMAKNKNKKKRSGAISMDIAENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE
Homology
[Close]
BLAST of Cp4.1LG14g00160 vs. TrEMBL
Match: A0A059BMF8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01078 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.4e-22
Identity = 66/109 (60.55%), Postives = 79/109 (72.48%), Query Frame = 1 

Query: 2   SLLSAYLSAMAKNKNKKKRSGAI-SMDIAENTAQELPQAMDVSESAVHKPASGALNLKLK 61
           +L  A+ SAMAKN+NKKKR+ A  +MD+AE T  + PQAMD SES     A+GA N  ++
Sbjct: 46  NLSLAFASAMAKNRNKKKRNAAADAMDVAEKTVSDGPQAMDTSESGAKSSAAGAANRNIR 105

Query: 62  KGRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 110
           KGRPMKR+KNVRK  A  KAISKNEQ  EK+ KN SKT R  SAKTLY+
Sbjct: 106 KGRPMKRTKNVRKMKAITKAISKNEQITEKVSKNDSKTVRTQSAKTLYD 154

[Close]
BLAST of Cp4.1LG14g00160 vs. TrEMBL
Match: A0A067GFN3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034280mg PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.7e-22
Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = 1 

Query: 11  MAKNKNKKKRSGAISMDIAENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 70
           MAKN+ KKKR GA+SMD+ E T  ++PQAMD SES   KP SG LN+K KKGRPMKRSKN
Sbjct: 1   MAKNRAKKKRGGAVSMDVTEPTVSDIPQAMDTSESGALKPVSGMLNIKTKKGRPMKRSKN 60

Query: 71  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 110
           VRK     KAIS NE+  EK LKN+S++  + SAK+LY+
Sbjct: 61  VRKKKTIEKAISTNEKYIEKSLKNESRSLSVQSAKSLYD 99

[Close]
BLAST of Cp4.1LG14g00160 vs. TrEMBL
Match: V4TXB0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010014mg PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.7e-22
Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = 1 

Query: 11  MAKNKNKKKRSGAISMDIAENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 70
           MAKN+ KKKR GA+SMD+ E T  ++PQAMD SES   KP SG LN+K KKGRPMKRSKN
Sbjct: 1   MAKNRAKKKRGGAVSMDVTEPTVSDIPQAMDTSESGALKPVSGMLNIKTKKGRPMKRSKN 60

Query: 71  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 110
           VRK     KAIS NE+  EK LKN+S++  + SAK+LY+
Sbjct: 61  VRKKKTIEKAISTNEKYIEKSLKNESRSLSVQSAKSLYD 99

[Close]
BLAST of Cp4.1LG14g00160 vs. TrEMBL
Match: A0A0B0NMZ5_GOSAR (Protein RRP5 OS=Gossypium arboreum GN=F383_19277 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.7e-21
Identity = 63/99 (63.64%), Postives = 72/99 (72.73%), Query Frame = 1 

Query: 11  MAKNKNKKKRSGAISMDIAENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 70
           MAKN+NKKKRSG  SMD+ E T  +LPQAMD SE+ V KP S    LK KKGRPMKRSKN
Sbjct: 1   MAKNRNKKKRSGVSSMDVNEGTVPDLPQAMDTSETEVQKPDSATAKLKTKKGRPMKRSKN 60

Query: 71  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 110
           VRK  A  KAI+KNE+ AEK  K +SK +R  SAK LY+
Sbjct: 61  VRKMKAVEKAIAKNEKYAEKSSKTESKKSRTQSAKLLYD 99

[Close]
BLAST of Cp4.1LG14g00160 vs. TrEMBL
Match: A0A0L9ULU8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g128100 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-21
Identity = 61/100 (61.00%), Postives = 76/100 (76.00%), Query Frame = 1 

Query: 11  MAKNKNKKKRSGAISMDIAENTAQELPQAMDVSESAVHKPASGALNLKLK-KGRPMKRSK 70
           MAKN+N KKR+G +SMD  + +  E PQAMD SES V    SGA N+K+K KGRPMKRSK
Sbjct: 1   MAKNRNNKKRNGVVSMDTTDASVSEQPQAMDTSESRVQNAVSGATNMKMKQKGRPMKRSK 60

Query: 71  NVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 110
           NVRK  A AKA+S NE+S EK+ KN++K +R+ SAK+LYE
Sbjct: 61  NVRKMKAIAKAVSSNEKSIEKVSKNENKRSRVKSAKSLYE 100

[Close]
BLAST of Cp4.1LG14g00160 vs. NCBI nr
Match: gi|659102744|ref|XP_008452291.1| (PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 83/99 (83.84%), Postives = 89/99 (89.90%), Query Frame = 1 

Query: 11  MAKNKNKKKRSGAISMDIAENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 70
           MAKN+NKKKR GA+SMD+ EN+  ELPQAMDVS S VHKPASGAL+LKLKKGRPMKRSKN
Sbjct: 1   MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDLKLKKGRPMKRSKN 60

Query: 71  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 110
           VRKT A AKAISK+EQS EKILKNQSKTTRI SAKTLYE
Sbjct: 61  VRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]
BLAST of Cp4.1LG14g00160 vs. NCBI nr
Match: gi|449463146|ref|XP_004149295.1| (PREDICTED: uncharacterized protein LOC101207037 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 6.2e-30
Identity = 77/95 (81.05%), Postives = 84/95 (88.42%), Query Frame = 1 

Query: 15  KNKKKRSGAISMDIAENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKNVRKT 74
              KKRSGA+SMD+ EN+ QELPQAMDVS S+VHKPASGAL+LKLKKGRPMKR+KNVRKT
Sbjct: 4   NRNKKRSGAVSMDVTENSVQELPQAMDVSMSSVHKPASGALDLKLKKGRPMKRTKNVRKT 63

Query: 75  MAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 110
            A AKAISK+EQS EKILKN SKTTRI SAKTLYE
Sbjct: 64  KAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE 98

[Close]
BLAST of Cp4.1LG14g00160 vs. NCBI nr
Match: gi|802586103|ref|XP_012070657.1| (PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas])

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 1 

Query: 11  MAKNKNKKKRSGAISMDIAENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 70
           MAKN+NKKK++GA+SMDI+E T  +L QAMD SES   KPASG L  K+K GRPMKRSKN
Sbjct: 1   MAKNRNKKKKNGAVSMDISEPTVSDLSQAMDTSESVAQKPASGVLTRKVK-GRPMKRSKN 60

Query: 71  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 110
           VRKT A AKA+SKNE+S EK+LK+++KT R  SAK LY+
Sbjct: 61  VRKTKAIAKAVSKNEKSVEKVLKHENKTARTQSAKLLYD 98

[Close]
BLAST of Cp4.1LG14g00160 vs. NCBI nr
Match: gi|629101819|gb|KCW67288.1| (hypothetical protein EUGRSUZ_F01078 [Eucalyptus grandis])

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-21
Identity = 66/109 (60.55%), Postives = 79/109 (72.48%), Query Frame = 1 

Query: 2   SLLSAYLSAMAKNKNKKKRSGAI-SMDIAENTAQELPQAMDVSESAVHKPASGALNLKLK 61
           +L  A+ SAMAKN+NKKKR+ A  +MD+AE T  + PQAMD SES     A+GA N  ++
Sbjct: 46  NLSLAFASAMAKNRNKKKRNAAADAMDVAEKTVSDGPQAMDTSESGAKSSAAGAANRNIR 105

Query: 62  KGRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 110
           KGRPMKR+KNVRK  A  KAISKNEQ  EK+ KN SKT R  SAKTLY+
Sbjct: 106 KGRPMKRTKNVRKMKAITKAISKNEQITEKVSKNDSKTVRTQSAKTLYD 154

[Close]
BLAST of Cp4.1LG14g00160 vs. NCBI nr
Match: gi|567919974|ref|XP_006451993.1| (hypothetical protein CICLE_v10010014mg [Citrus clementina])

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-21
Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = 1 

Query: 11  MAKNKNKKKRSGAISMDIAENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 70
           MAKN+ KKKR GA+SMD+ E T  ++PQAMD SES   KP SG LN+K KKGRPMKRSKN
Sbjct: 1   MAKNRAKKKRGGAVSMDVTEPTVSDIPQAMDTSESGALKPVSGMLNIKTKKGRPMKRSKN 60

Query: 71  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 110
           VRK     KAIS NE+  EK LKN+S++  + SAK+LY+
Sbjct: 61  VRKKKTIEKAISTNEKYIEKSLKNESRSLSVQSAKSLYD 99

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g00160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g00160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A059BMF8_EUCGR7.4e-2260.55Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01078 PE=4 SV=1[more]
A0A067GFN3_CITSI9.7e-2261.62Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034280mg PE=4 SV=1[more]
V4TXB0_9ROSI9.7e-2261.62Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010014mg PE=4 SV=1[more]
A0A0B0NMZ5_GOSAR3.7e-2163.64Protein RRP5 OS=Gossypium arboreum GN=F383_19277 PE=4 SV=1[more]
A0A0L9ULU8_PHAAN4.8e-2161.00Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g128100 PE=4 SV=1[more]
BLAST of Cp4.1LG14g00160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g00160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102744|ref|XP_008452291.1|1.6e-3383.84PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo][more]
gi|449463146|ref|XP_004149295.1|6.2e-3081.05PREDICTED: uncharacterized protein LOC101207037 [Cucumis sativus][more]
gi|802586103|ref|XP_012070657.1|1.1e-2366.67PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas][more]
gi|629101819|gb|KCW67288.1|1.1e-2160.55hypothetical protein EUGRSUZ_F01078 [Eucalyptus grandis][more]
gi|567919974|ref|XP_006451993.1|1.4e-2161.62hypothetical protein CICLE_v10010014mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g00160.1Cp4.1LG14g00160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36385FAMILY NOT NAMEDcoord: 12..109
score: 9.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g00160Cucsa.074480Cucumber (Gy14) v1cgycpeB0118
Cp4.1LG14g00160CmaCh16G008070Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g00160CmaCh04G009170Cucurbita maxima (Rimu)cmacpeB714
Cp4.1LG14g00160CmoCh04G009850Cucurbita moschata (Rifu)cmocpeB667
Cp4.1LG14g00160Csa3G099690Cucumber (Chinese Long) v2cpecuB215
Cp4.1LG14g00160MELO3C016554Melon (DHL92) v3.5.1cpemeB186
Cp4.1LG14g00160ClCG10G006500Watermelon (Charleston Gray)cpewcgB195
Cp4.1LG14g00160CSPI03G05860Wild cucumber (PI 183967)cpecpiB218
Cp4.1LG14g00160Lsi05G006870Bottle gourd (USVL1VR-Ls)cpelsiB176
Cp4.1LG14g00160MELO3C016554.2Melon (DHL92) v3.6.1cpemedB235
Cp4.1LG14g00160CsaV3_3G005960Cucumber (Chinese Long) v3cpecucB0258
Cp4.1LG14g00160Bhi11G000601Wax gourdcpewgoB0275
Cp4.1LG14g00160CsGy3G005980Cucumber (Gy14) v2cgybcpeB328
Cp4.1LG14g00160Carg00035Silver-seed gourdcarcpeB0937
Cp4.1LG14g00160Carg24075Silver-seed gourdcarcpeB0308
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g00160Cucumber (Chinese Long) v3cpecucB0244
Cp4.1LG14g00160Wax gourdcpewgoB0283
Cp4.1LG14g00160Cucurbita pepo (Zucchini)cpecpeB005
Cp4.1LG14g00160Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG14g00160Cucurbita pepo (Zucchini)cpecpeB240
Cp4.1LG14g00160Cucumber (Gy14) v1cgycpeB0326
Cp4.1LG14g00160Cucurbita maxima (Rimu)cmacpeB469
Cp4.1LG14g00160Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g00160Wild cucumber (PI 183967)cpecpiB206
Cp4.1LG14g00160Cucumber (Chinese Long) v2cpecuB203
Cp4.1LG14g00160Bottle gourd (USVL1VR-Ls)cpelsiB167
Cp4.1LG14g00160Watermelon (Charleston Gray)cpewcgB206
Cp4.1LG14g00160Watermelon (97103) v1cpewmB217
Cp4.1LG14g00160Watermelon (97103) v1cpewmB220
Cp4.1LG14g00160Cucumber (Gy14) v2cgybcpeB033