CmaCh04G009170 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G009170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_19
Location	Cma_Chr04 : 4746625 .. 4747704 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAAAACCCGACAAAAATGGTATTTAATTATGAAAGGGTAAAATGGTATTTTCAGGTCCCAGGTCAAAATTCAAGAAGTACAAACATACTCCTTCTTTTAGCTTCTTGCTTCCCTTTGATCTTAGGGTTTTCATTGTCAATCTTCGCGGCTTTATTTCTCGGCGATGGCGAAGAACAGGAATAAGAAGAAGAAGGGAAGTGGAGCAATTTCCATGGACATAACCGAAAATTCTGTTCACGAGCTCCCTCAAGGTACATTTCAGTTATGTGAAAAGGGATTGAACTTAACAGTATCAGAAAGAATGAGAATTTATCTTCCAGATGTTTTTACTTGTCGTTTCTTGTCCATTGCCCCCCTTTAAGATGTTTTAGATCTCCTGTGTTTTCATAGAGTAGTTTTCAAGTTTAACTAAGTGATTTCCCCCTTGAATTTAAAGCGATGGACGTGCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCTCAATCTGTAAGCTTCTACCTGGAAATTGTGCTTAATTTTTTTAACCACAATTCATCATGCGCTTTTGCTTTTGTTTGTGGTTTCAATTCTCAAGTGTTCCCAGTTCCTGATTTTAGATTAATTGCCTTTGTTGAATTGTTGTGCACAGAGATGAGTTAGATTTGGATTTCATTATTTCACATGACTAAGCCAATATCCCAAGTTTGTTCATTTTGAGATGAGGCCGAGAAAATTAGGATGCATCTTTAAATGCTATCAAACAAGAAGCTTTCTTGGGTTTGGTTGTCTCTGACCGACCGTATTTCAATTTGTATTTTGATTGCTGAGATGACGTTGTTTAACGTTGGCTGTTCTACTAGATTTGTTTGTTATTGCCCTTTTCCTATTTGCACCACCCACTATGTCTGATCAGTACCCTTTGTTGGATAGAAAGCTGAAGAAGGGGGGAAGACCAATGAAGCGATCGAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAACAATCCGCCGAGAAAATATTGAAAAATCAGGGGAAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATGA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAACCCGACAAAAATGGTATTTAATTATGAAAGGGTAAAATGGTATTTTCAGGTCCCAGGTCAAAATTCAAGAAGTACAAACATACTCCTTCTTTTAGCTTCTTGCTTCCCTTTGATCTTAGGGTTTTCATTGTCAATCTTCGCGGCTTTATTTCTCGGCGATGGCGAAGAACAGGAATAAGAAGAAGAAGGGAAGTGGAGCAATTTCCATGGACATAACCGAAAATTCTGTTCACGAGCTCCCTCAAGCGATGGACGTGCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCTCAATCTATTTGTTTGTTATTGCCCTTTTCCTATTTGCACCACCCACTATGTCTGATCAGTACCCTTTGTTGGATAGAAAGCTGAAGAAGGGGGGAAGACCAATGAAGCGATCGAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAACAATCCGCCGAGAAAATATTGAAAAATCAGGGGAAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATGA

Coding sequence (CDS)

ATGGCGAAGAACAGGAATAAGAAGAAGAAGGGAAGTGGAGCAATTTCCATGGACATAACCGAAAATTCTGTTCACGAGCTCCCTCAAGCGATGGACGTGCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCTCAATCTATTTGTTTGTTATTGCCCTTTTCCTATTTGCACCACCCACTATGTCTGATCAGTACCCTTTGTTGGATAGAAAGCTGAAGAAGGGGGGAAGACCAATGAAGCGATCGAAGAATGTTAGGAAAACAAAAGCCATATCCAAGACCGAACAATCCGCCGAGAAAATATTGAAAAATCAGGGGAAAACTACCAGGATACACTCTGCAAAAACATTGTATGAATGA

Protein sequence

MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPPTMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISKTEQSAEKILKNQGKTTRIHSAKTLYE

Homology

[Close]

BLAST of CmaCh04G009170 vs. TrEMBL
Match: A0A0B2RWH5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_001509 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.1e-13
Identity = 54/124 (43.55%), Postives = 70/124 (56.45%), Query Frame = 1


Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRN KKK +G +SMD T+ SV E PQAMD+     +N +   +              
Sbjct: 1   MAKNRNNKKKRNGVVSMDTTDASVSEQPQAMDISESGVLNTVTGAT-------------- 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISK----TEQSAEKILKNQGKTTRIHSAK 120
                    + K+K+ GRPMKRSKNVRK KA++K     E+S  K+ KN+ K  R+ SAK
Sbjct: 61  ---------NMKMKQKGRPMKRSKNVRKMKAVAKAVSANEKSVAKLSKNESKKNRVQSAK 101

[Close]

BLAST of CmaCh04G009170 vs. TrEMBL
Match: I1M3D9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G281800 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-12
Identity = 55/124 (44.35%), Postives = 69/124 (55.65%), Query Frame = 1


Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRN KKK +G +SMD T+ SV E PQAMD      +N +   +I             
Sbjct: 1   MAKNRNNKKKRNGVVSMDTTDASVSEQPQAMDTSESGVLNTVSGATI------------- 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISK----TEQSAEKILKNQGKTTRIHSAK 120
                      K+K+ GRPMKRSKNVRK KA++K     E+S  K+ KN+ K  R+ SAK
Sbjct: 61  ----------MKMKQKGRPMKRSKNVRKMKAVAKAVSANEKSVAKLSKNESKKNRVQSAK 101

[Close]

BLAST of CmaCh04G009170 vs. TrEMBL
Match: I1LUW2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G219500 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.9e-12
Identity = 55/124 (44.35%), Postives = 69/124 (55.65%), Query Frame = 1


Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRN KKK +G +SMD T+ SV E  QAMD      +N     +              
Sbjct: 1   MAKNRNNKKKRNGVVSMDTTDASVSEQSQAMDTSESGVLNTASGAT-------------- 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISK----TEQSAEKILKNQGKTTRIHSAK 120
                    + K+K+ GRPMKRSKNVRK KAI+K     E+S EK+ KN+ K +R+ SAK
Sbjct: 61  ---------NMKMKQKGRPMKRSKNVRKMKAIAKALSANEKSIEKLSKNESKKSRVQSAK 101

[Close]

BLAST of CmaCh04G009170 vs. TrEMBL
Match: A0A0B2R2V9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_007752 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.9e-12
Identity = 55/124 (44.35%), Postives = 69/124 (55.65%), Query Frame = 1


Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRN KKK +G +SMD T+ SV E  QAMD      +N     +              
Sbjct: 1   MAKNRNNKKKRNGVVSMDTTDASVSEQSQAMDTSESGVLNTASGAT-------------- 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISK----TEQSAEKILKNQGKTTRIHSAK 120
                    + K+K+ GRPMKRSKNVRK KAI+K     E+S EK+ KN+ K +R+ SAK
Sbjct: 61  ---------NMKMKQKGRPMKRSKNVRKMKAIAKALSANEKSIEKLSKNESKKSRVQSAK 101

[Close]

BLAST of CmaCh04G009170 vs. TrEMBL
Match: A0A0L9ULU8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g128100 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.5e-11
Identity = 54/124 (43.55%), Postives = 71/124 (57.26%), Query Frame = 1


Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRN KK+ +G +SMD T+ SV E PQAMD    +  N +   +              
Sbjct: 1   MAKNRNNKKR-NGVVSMDTTDASVSEQPQAMDTSESRVQNAVSGAT-------------- 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISK----TEQSAEKILKNQGKTTRIHSAK 120
                    + K+K+ GRPMKRSKNVRK KAI+K     E+S EK+ KN+ K +R+ SAK
Sbjct: 61  ---------NMKMKQKGRPMKRSKNVRKMKAIAKAVSSNEKSIEKVSKNENKRSRVKSAK 100

[Close]

BLAST of CmaCh04G009170 vs. NCBI nr
Match: gi|659102744|ref|XP_008452291.1| (PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 2.0e-21
Identity = 76/124 (61.29%), Postives = 80/124 (64.52%), Query Frame = 1


Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRNKKK+G GA+SMD+TENSVHELPQAMDV                        A  
Sbjct: 1   MAKNRNKKKRG-GAVSMDVTENSVHELPQAMDV-----------------------SAST 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKT----KAISKTEQSAEKILKNQGKTTRIHSAK 120
                   LD KLKK GRPMKRSKNVRKT    KAISK+EQS EKILKNQ KTTRI SAK
Sbjct: 61  VHKPASGALDLKLKK-GRPMKRSKNVRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAK 99

[Close]

BLAST of CmaCh04G009170 vs. NCBI nr
Match: gi|449463146|ref|XP_004149295.1| (PREDICTED: uncharacterized protein LOC101207037 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 72/124 (58.06%), Postives = 83/124 (66.94%), Query Frame = 1


Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRNKK+  SGA+SMD+TENSV ELPQAMDV S+  +++  + +              
Sbjct: 1   MAKNRNKKR--SGAVSMDVTENSVQELPQAMDV-SMSSVHKPASGA-------------- 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAI----SKTEQSAEKILKNQGKTTRIHSAK 120
                   LD KLKKG RPMKR+KNVRKTKAI    SK+EQS EKILKN  KTTRI SAK
Sbjct: 61  --------LDLKLKKG-RPMKRTKNVRKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAK 98

[Close]

BLAST of CmaCh04G009170 vs. NCBI nr
Match: gi|734413333|gb|KHN36778.1| (hypothetical protein glysoja_001509 [Glycine soja])

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-12
Identity = 54/124 (43.55%), Postives = 70/124 (56.45%), Query Frame = 1


Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRN KKK +G +SMD T+ SV E PQAMD+     +N +   +              
Sbjct: 1   MAKNRNNKKKRNGVVSMDTTDASVSEQPQAMDISESGVLNTVTGAT-------------- 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISK----TEQSAEKILKNQGKTTRIHSAK 120
                    + K+K+ GRPMKRSKNVRK KA++K     E+S  K+ KN+ K  R+ SAK
Sbjct: 61  ---------NMKMKQKGRPMKRSKNVRKMKAVAKAVSANEKSVAKLSKNESKKNRVQSAK 101

[Close]

BLAST of CmaCh04G009170 vs. NCBI nr
Match: gi|356549777|ref|XP_003543267.1| (PREDICTED: uncharacterized protein LOC100790442 [Glycine max])

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-12
Identity = 55/124 (44.35%), Postives = 69/124 (55.65%), Query Frame = 1


Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRN KKK +G +SMD T+ SV E PQAMD      +N +   +I             
Sbjct: 1   MAKNRNNKKKRNGVVSMDTTDASVSEQPQAMDTSESGVLNTVSGATI------------- 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAISK----TEQSAEKILKNQGKTTRIHSAK 120
                      K+K+ GRPMKRSKNVRK KA++K     E+S  K+ KN+ K  R+ SAK
Sbjct: 61  ----------MKMKQKGRPMKRSKNVRKMKAVAKAVSANEKSVAKLSKNESKKNRVQSAK 101

[Close]

BLAST of CmaCh04G009170 vs. NCBI nr
Match: gi|802586103|ref|XP_012070657.1| (PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas])

HSP 1 Score: 78.6 bits (192), Expect = 8.4e-12
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 1


Query: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVLSLQFINQLLALSIYLFVIALFLFAPP 60
           MAKNRNKKKK +GA+SMDI+E +V +L QAMD  + + + Q  A  +             
Sbjct: 1   MAKNRNKKKK-NGAVSMDISEPTVSDLSQAMD--TSESVAQKPASGV------------- 60

Query: 61  TMSDQYPLLDRKLKKGGRPMKRSKNVRKTKAI----SKTEQSAEKILKNQGKTTRIHSAK 120
                   L RK+K  GRPMKRSKNVRKTKAI    SK E+S EK+LK++ KT R  SAK
Sbjct: 61  --------LTRKVK--GRPMKRSKNVRKTKAIAKAVSKNEKSVEKVLKHENKTARTQSAK 98

The following BLAST results are available for this feature:

BLAST of CmaCh04G009170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G009170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B2RWH5_GLYSO	9.1e-13	43.55	Uncharacterized protein OS=Glycine soja GN=glysoja_001509 PE=4 SV=1	[more]
I1M3D9_SOYBN	1.5e-12	44.35	Uncharacterized protein OS=Glycine max GN=GLYMA_13G281800 PE=4 SV=1	[more]
I1LUW2_SOYBN	5.9e-12	44.35	Uncharacterized protein OS=Glycine max GN=GLYMA_12G219500 PE=4 SV=1	[more]
A0A0B2R2V9_GLYSO	5.9e-12	44.35	Uncharacterized protein OS=Glycine soja GN=glysoja_007752 PE=4 SV=1	[more]
A0A0L9ULU8_PHAAN	6.5e-11	43.55	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g128100 PE=4 SV=1	[more]

BLAST of CmaCh04G009170 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G009170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102744\|ref\|XP_008452291.1\|	2.0e-21	61.29	PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo]	[more]
gi\|449463146\|ref\|XP_004149295.1\|	2.7e-18	58.06	PREDICTED: uncharacterized protein LOC101207037 [Cucumis sativus]	[more]
gi\|734413333\|gb\|KHN36778.1\|	1.3e-12	43.55	hypothetical protein glysoja_001509 [Glycine soja]	[more]
gi\|356549777\|ref\|XP_003543267.1\|	2.2e-12	44.35	PREDICTED: uncharacterized protein LOC100790442 [Glycine max]	[more]
gi\|802586103\|ref\|XP_012070657.1\|	8.4e-12	49.19	PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G009170.1	CmaCh04G009170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36385	FAMILY NOT NAMED	coord: 2..120 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G009170	Cucsa.074480	Cucumber (Gy14) v1	cgycmaB0122
CmaCh04G009170	Csa3G099690	Cucumber (Chinese Long) v2	cmacuB702
CmaCh04G009170	MELO3C016554	Melon (DHL92) v3.5.1	cmameB689
CmaCh04G009170	ClCG10G006500	Watermelon (Charleston Gray)	cmawcgB614
CmaCh04G009170	CSPI03G05860	Wild cucumber (PI 183967)	cmacpiB710
CmaCh04G009170	CmoCh04G009850	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G009170	CmoCh16G008630	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G009170	Lsi05G006870	Bottle gourd (USVL1VR-Ls)	cmalsiB691
CmaCh04G009170	Cp4.1LG14g00160	Cucurbita pepo (Zucchini)	cmacpeB714
CmaCh04G009170	MELO3C016554.2	Melon (DHL92) v3.6.1	cmamedB778
CmaCh04G009170	CsaV3_3G005960	Cucumber (Chinese Long) v3	cmacucB0837
CmaCh04G009170	Cla97C10G190450	Watermelon (97103) v2	cmawmbB718
CmaCh04G009170	CsGy3G005980	Cucumber (Gy14) v2	cgybcmaB416
CmaCh04G009170	Carg00035	Silver-seed gourd	carcmaB0948
CmaCh04G009170	Carg24075	Silver-seed gourd	carcmaB0301

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G009170	CmaCh16G008070	Cucurbita maxima (Rimu)	cmacmaB350

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G009170	Wax gourd	cmawgoB0826
CmaCh04G009170	Cucurbita maxima (Rimu)	cmacmaB064
CmaCh04G009170	Watermelon (97103) v1	cmawmB659
CmaCh04G009170	Watermelon (97103) v1	cmawmB680
CmaCh04G009170	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G009170	Bottle gourd (USVL1VR-Ls)	cmalsiB685