CsGy2G000840 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G000840
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	E3 ubiquitin-protein ligase
Location	Chr2 : 521939 .. 522289 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACATCAGCTAATTATGCAGCAAGTTACATCATGGACATTGAATCAATGTTCGATCTCGACACAGTCCTCACCGGAGCCGATGACTTCTATTACTTCCACACCGTTGTAGCGCCACCACCCGTGATGGTTGCTGAATTACCGACAGTGGCTGCAGCGGACGATGTATGTGCGGTTTGTATGGAGGATTTTCTGCCGGATGAAGGCGGTAAGCAGATCCCATGTGGCCATGTGTACCATCAATCTTGCTTATCGTCTTGGCTCTCTATCCGCGACTCTTGCCCTCTCTGCCGTTGTCATATCGCCCCCGGTGACAAAACGGAGACGTCCAAAACCGTACAAGTTTAG

mRNA sequence

ATGGCTACATCAGCTAATTATGCAGCAAGTTACATCATGGACATTGAATCAATGTTCGATCTCGACACAGTCCTCACCGGAGCCGATGACTTCTATTACTTCCACACCGTTGTAGCGCCACCACCCGTGATGGTTGCTGAATTACCGACAGTGGCTGCAGCGGACGATGTATGTGCGGTTTGTATGGAGGATTTTCTGCCGGATGAAGGCGGTAAGCAGATCCCATGTGGCCATGTGTACCATCAATCTTGCTTATCGTCTTGGCTCTCTATCCGCGACTCTTGCCCTCTCTGCCGTTGTCATATCGCCCCCGGTGACAAAACGGAGACGTCCAAAACCGTACAAGTTTAG

Coding sequence (CDS)

ATGGCTACATCAGCTAATTATGCAGCAAGTTACATCATGGACATTGAATCAATGTTCGATCTCGACACAGTCCTCACCGGAGCCGATGACTTCTATTACTTCCACACCGTTGTAGCGCCACCACCCGTGATGGTTGCTGAATTACCGACAGTGGCTGCAGCGGACGATGTATGTGCGGTTTGTATGGAGGATTTTCTGCCGGATGAAGGCGGTAAGCAGATCCCATGTGGCCATGTGTACCATCAATCTTGCTTATCGTCTTGGCTCTCTATCCGCGACTCTTGCCCTCTCTGCCGTTGTCATATCGCCCCCGGTGACAAAACGGAGACGTCCAAAACCGTACAAGTTTAG

Protein sequence

MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV

Homology

[Close]

BLAST of CsGy2G000840 vs. NCBI nr
Match: XP_011650093.1 (PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus] >KGN60585.1 hypothetical protein Csa_2G000920 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 5.0e-50
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MATSANYAASYIMDIESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAV 60
           MATSANYAASYIMDIESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAV
Sbjct: 1   MATSANYAASYIMDIESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAV 60

Query: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 117
           CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV
Sbjct: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 116

[Close]

BLAST of CsGy2G000840 vs. NCBI nr
Match: XP_023537996.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 74/115 (64.35%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 2   ATSANYAASYIMDIESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAVC 61
           AT + +AASYIMD+ESMFDLDTVLTGAD                A+LPTV   DDVCAVC
Sbjct: 8   ATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTV-VTDDVCAVC 67

Query: 62  MEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 117
           ME+F  DEGGKQIPCGHVYHQ+C+SSWLS+ D CPLCRCH++  +K+ET+K VQV
Sbjct: 68  MEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDNKSETAKPVQV 121

[Close]

BLAST of CsGy2G000840 vs. NCBI nr
Match: XP_022938297.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 151.4 bits (381), Expect = 1.9e-33
Identity = 73/116 (62.93%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 2   ATSANYAASYIMDIESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAVC 61
           AT + +AA YIMD+ESMFDLDTVLTGAD                A+LPTV   DDVCAVC
Sbjct: 8   ATRSAFAARYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTV-VTDDVCAVC 67

Query: 62  MEDFLPDEGGKQIPCGHVYHQSCLSSWLSI-RDSCPLCRCHIAPGDKTETSKTVQV 117
           ME+F  DEGGKQIPCGHVYHQ+C+SSWLS+  D CPLCRCH++  +K+ET+K VQV
Sbjct: 68  MEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKSETAKPVQV 122

[Close]

BLAST of CsGy2G000840 vs. NCBI nr
Match: XP_022965415.1 (E3 ubiquitin-protein ligase RNF181-like [Cucurbita maxima])

HSP 1 Score: 144.1 bits (362), Expect = 3.1e-31
Identity = 68/115 (59.13%), Postives = 78/115 (67.83%), Query Frame = 0


Query: 2   ATSANYAASYIMDIESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAVC 61
           AT + +AASYIMD+ESMFDLDTVLTGAD                           VCAVC
Sbjct: 8   ATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQMIITEPPSVVXXXXXXXXXXXVCAVC 67

Query: 62  MEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 117
           ME+F  DEGGKQIPCGHVYHQSC+SSWLS+ D CPLCRCH++  +K ET+K VQV
Sbjct: 68  MEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDNKLETTKPVQV 122

[Close]

BLAST of CsGy2G000840 vs. NCBI nr
Match: XP_022946863.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 117.1 bits (292), Expect = 4.0e-23
Identity = 61/112 (54.46%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 3   TSANYAASYIMDIESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAVCM 62
           T+ N AA+Y   IE +FDLD VL+GAD                A+LPTV A  DVCAVC+
Sbjct: 10  TTRNLAAAY--PIEFLFDLDMVLSGAD--DFGCCQISASDSLVADLPTVVA--DVCAVCL 69

Query: 63  EDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTV 115
           EDF PDE GKQIPCGHVYH+SC+SSWL++ + CPLCRC IA       S T+
Sbjct: 70  EDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTL 115

[Close]

BLAST of CsGy2G000840 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 8.7e-12
Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 48  LPTVAAADDV-------CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRC 107
           LPTV    D+       CAVCM++F      KQ+PC HV+HQ CL  WL + +SCP+CR 
Sbjct: 199 LPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRF 258

[Close]

BLAST of CsGy2G000840 vs. TAIR10
Match: AT2G39720.1 (RING-H2 finger C2A)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 58  CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTE 110
           CAVC E+F+     +++PC H+YH  C+  WL+IR+SCP+CR  +   D T+
Sbjct: 201 CAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHELPAEDLTD 252

[Close]

BLAST of CsGy2G000840 vs. TAIR10
Match: AT3G60080.1 (RING/U-box superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 57  VCAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCR 100
           +CAVC EDF+  E  +++PC H+YH  C+  WLS  +SCPLCR
Sbjct: 168 LCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCR 210

[Close]

BLAST of CsGy2G000840 vs. TAIR10
Match: AT1G68180.1 (RING/U-box superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-11
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 55  DDVCAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPG 106
           + VCA+C E+F   E GK++ C H+YH SC+ SWL+I ++CP+CR  +  G
Sbjct: 135 EKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICRFEVNLG 185

[Close]

BLAST of CsGy2G000840 vs. TAIR10
Match: AT2G44330.1 (RING/U-box superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-11
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 52  AAADD---VCAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKT 111
           A++DD    CA+C EDF+  E  +++PC H+YH  C+  WL+  +SCPLCR  +      
Sbjct: 87  ASSDDSALPCAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHNSCPLCRVELPVASSE 146

[Close]

BLAST of CsGy2G000840 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 58  CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQ 116
           CAVCM+DF      KQ+PC H+YH+ CL  WL + +SCP+CR H  P D  +  + V+
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCR-HELPTDDPDYERRVR 280

[Close]

BLAST of CsGy2G000840 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-10
Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 48  LPTVAAADDV-------CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRC 107
           LPTV    D+       CAVCM++F      KQ+PC HV+HQ CL  WL + +SCP+CR 
Sbjct: 199 LPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRF 258

[Close]

BLAST of CsGy2G000840 vs. Swiss-Prot
Match: sp|O22283|RHC2A_ARATH (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-10
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 58  CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTE 110
           CAVC E+F+     +++PC H+YH  C+  WL+IR+SCP+CR  +   D T+
Sbjct: 201 CAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHELPAEDLTD 252

[Close]

BLAST of CsGy2G000840 vs. Swiss-Prot
Match: sp|Q9SPL2|CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.9e-10
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 57  VCAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGD 107
           VCAVC +  +  E GK++PCGH YH  C+  WL  R+SCP+CR  +   D
Sbjct: 256 VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDD 305

[Close]

BLAST of CsGy2G000840 vs. Swiss-Prot
Match: sp|Q91YL2|RN126_MOUSE (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-09
Identity = 28/70 (40.00%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 48  LPTVAAADD------VCAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCH 107
           LPTV   ++       C VC ED+   E  +Q+PC H++H SC+  WL   DSCP+CR  
Sbjct: 215 LPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 274

Query: 108 IAPGDKTETS 112
           +  G  T T+
Sbjct: 275 LT-GQNTATN 283

[Close]

BLAST of CsGy2G000840 vs. TrEMBL
Match: tr|A0A0A0LEZ1|A0A0A0LEZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.3e-50
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MATSANYAASYIMDIESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAV 60
           MATSANYAASYIMDIESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAV
Sbjct: 1   MATSANYAASYIMDIESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAV 60

Query: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 117
           CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV
Sbjct: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 116

[Close]

BLAST of CsGy2G000840 vs. TrEMBL
Match: tr|A0A1S4DZX3|A0A1S4DZX3_CUCME (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-22
Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 15  IESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAVCMEDFLPDEGGKQI 74
           IE +FDLDTVL+GAD                A+ PTV A  DVCAVC++DF PDE GKQI
Sbjct: 20  IEFLFDLDTVLSGAD-DLDCSCQITPSDSPVADFPTVVA--DVCAVCLDDFRPDEAGKQI 79

Query: 75  PCGHVYHQSCLSSWLSIRDSCPLCRCHIA--PGDKT 109
           PCGHVYH+SC+SSWL++ D CPLCRC +A  P D T
Sbjct: 80  PCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDST 112

[Close]

BLAST of CsGy2G000840 vs. TrEMBL
Match: tr|A0A0A0LKR7|A0A0A0LKR7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-22
Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 15  IESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAVCMEDFLPDEGGKQI 74
           IE +FDLDTVL+GAD                A+ PTV A  DVCAVC++DF PDE GKQI
Sbjct: 20  IEFLFDLDTVLSGAD--DLGCCQITPSDSPVADFPTVVA--DVCAVCLDDFHPDEAGKQI 79

Query: 75  PCGHVYHQSCLSSWLSIRDSCPLCRCHIA--PGDKT 109
           PCGHVYH+SC+SSWL++ D CPLCRC +A  P D T
Sbjct: 80  PCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDST 111

[Close]

BLAST of CsGy2G000840 vs. TrEMBL
Match: tr|A0A2N9GBF9|A0A2N9GBF9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24682 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.3e-17
Identity = 47/106 (44.34%), Postives = 60/106 (56.60%), Query Frame = 0


Query: 1   MATSANYAASYIMDIESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAAD---DV 60
           MA  +NY       I+ +FDLD  LT  D                  +PTV   D   DV
Sbjct: 1   MAAMSNY------PIDFLFDLDQALTLVDDSGQHIKIEAQKTLVIDHMPTVTPTDNDHDV 60

Query: 61  CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIA 104
           C+VC++ F   EGGKQ+PCGHVYH +C++SWLS  +SCPLCRC I+
Sbjct: 61  CSVCIQSFRSGEGGKQVPCGHVYHATCIASWLSRHNSCPLCRCKIS 100

[Close]

BLAST of CsGy2G000840 vs. TrEMBL
Match: tr|A0A251L696|A0A251L696_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G026100 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-16
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 1   MATSANYAASYIMDIESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAV 60
           MA   N  +S ++D+   FD+D  L+                   A++PTV  +DDVC+V
Sbjct: 1   MAAVPNAFSSCLIDLS--FDMDEALS---FHSDFARQISKSVSLVADMPTVDVSDDVCSV 60

Query: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIA 104
           CME F  D GGK++PCGHVYH  C+SSWLS  +SCPLCRC+I+
Sbjct: 61  CMEGFGGDVGGKRVPCGHVYHAGCISSWLSNCNSCPLCRCNIS 98

The following BLAST results are available for this feature:

BLAST of CsGy2G000840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650093.1	5.0e-50	100.00	PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus] >KGN60585.1...	[more]
XP_023537996.1	2.1e-35	64.35	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022938297.1	1.9e-33	62.93	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]
XP_022965415.1	3.1e-31	59.13	E3 ubiquitin-protein ligase RNF181-like [Cucurbita maxima]	[more]
XP_022946863.1	4.0e-23	54.46	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]

BLAST of CsGy2G000840 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19950.1	8.7e-12	43.94	RING/U-box superfamily protein	[more]
AT2G39720.1	1.9e-11	44.23	RING-H2 finger C2A	[more]
AT3G60080.1	1.9e-11	53.49	RING/U-box superfamily protein	[more]
AT1G68180.1	2.5e-11	47.06	RING/U-box superfamily protein	[more]
AT2G44330.1	2.5e-11	39.68	RING/U-box superfamily protein	[more]

BLAST of CsGy2G000840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P0CH30\|RING1_GOSHI	1.2e-10	46.55	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
sp\|Q8LPN7\|RNG1L_ARATH	1.6e-10	43.94	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
sp\|O22283\|RHC2A_ARATH	3.5e-10	44.23	Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
sp\|Q9SPL2\|CIP8_ARATH	5.9e-10	48.00	E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV...	[more]
sp\|Q91YL2\|RN126_MOUSE	2.9e-09	40.00	E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1	[more]

BLAST of CsGy2G000840 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LEZ1\|A0A0A0LEZ1_CUCSA	3.3e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 PE=4 SV=1	[more]
tr\|A0A1S4DZX3\|A0A1S4DZX3_CUCME	1.3e-22	58.33	RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV...	[more]
tr\|A0A0A0LKR7\|A0A0A0LKR7_CUCSA	1.7e-22	58.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1	[more]
tr\|A0A2N9GBF9\|A0A2N9GBF9_FAGSY	8.3e-17	44.34	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24682 PE=4 SV=1	[more]
tr\|A0A251L696\|A0A251L696_MANES	1.4e-16	45.63	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G026100 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING
IPR011016	Znf_RING-CH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044267	cellular protein metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G000840.1	CsGy2G000840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 57..99 e-value: 0.01 score: 7.2
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 58..98 e-value: 5.4E-8 score: 42.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 57..99 e-value: 1.0E-12 score: 48.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 58..99 score: 12.829
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 49..115 e-value: 9.7E-18 score: 65.1
None	No IPR available	PANTHER	PTHR44274	FAMILY NOT NAMED	coord: 50..112
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 48..104

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G000840	Cla016793	Watermelon (97103) v1	cgybwmB154
CsGy2G000840	Csa2G000920	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G000840	MELO3C004585	Melon (DHL92) v3.5.1	cgybmeB121
CsGy2G000840	ClCG11G002160	Watermelon (Charleston Gray)	cgybwcgB094
CsGy2G000840	CSPI02G00870	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G000840	CmaCh05G013660	Cucurbita maxima (Rimu)	cgybcmaB257
CsGy2G000840	CmaCh12G012700	Cucurbita maxima (Rimu)	cgybcmaB178
CsGy2G000840	CmoCh12G013030	Cucurbita moschata (Rifu)	cgybcmoB170
CsGy2G000840	Lsi11G002300	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G000840	Cp4.1LG07g10360	Cucurbita pepo (Zucchini)	cgybcpeB272
CsGy2G000840	Cp4.1LG11g11400	Cucurbita pepo (Zucchini)	cgybcpeB168
CsGy2G000840	MELO3C004585.2	Melon (DHL92) v3.6.1	cgybmedB119
CsGy2G000840	CsaV3_2G001940	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G000840	Cla97C11G208560	Watermelon (97103) v2	cgybwmbB098
CsGy2G000840	BhiUN55G9	Wax gourd	cgybwgoB167
CsGy2G000840	Carg10839	Silver-seed gourd	carcgybB0573
CsGy2G000840	Carg18595	Silver-seed gourd	carcgybB0886

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G000840	Cucumber (Gy14) v2	cgybcgybB011
CsGy2G000840	Cucurbita maxima (Rimu)	cgybcmaB154
CsGy2G000840	Cucurbita maxima (Rimu)	cgybcmaB163
CsGy2G000840	Cucurbita maxima (Rimu)	cgybcmaB175
CsGy2G000840	Cucurbita maxima (Rimu)	cgybcmaB202
CsGy2G000840	Cucurbita moschata (Rifu)	cgybcmoB146
CsGy2G000840	Cucurbita moschata (Rifu)	cgybcmoB155
CsGy2G000840	Cucurbita moschata (Rifu)	cgybcmoB169
CsGy2G000840	Cucurbita moschata (Rifu)	cgybcmoB179
CsGy2G000840	Cucurbita moschata (Rifu)	cgybcmoB196
CsGy2G000840	Cucurbita moschata (Rifu)	cgybcmoB243
CsGy2G000840	Cucurbita pepo (Zucchini)	cgybcpeB204
CsGy2G000840	Cucurbita pepo (Zucchini)	cgybcpeB225
CsGy2G000840	Cucurbita pepo (Zucchini)	cgybcpeB230
CsGy2G000840	Cucurbita pepo (Zucchini)	cgybcpeB232
CsGy2G000840	Cucurbita pepo (Zucchini)	cgybcpeB269
CsGy2G000840	Cucumber (Chinese Long) v2	cgybcuB053
CsGy2G000840	Bottle gourd (USVL1VR-Ls)	cgyblsiB123
CsGy2G000840	Bottle gourd (USVL1VR-Ls)	cgyblsiB125
CsGy2G000840	Melon (DHL92) v3.5.1	cgybmeB096
CsGy2G000840	Melon (DHL92) v3.5.1	cgybmeB113
CsGy2G000840	Melon (DHL92) v3.6.1	cgybmedB093
CsGy2G000840	Watermelon (Charleston Gray)	cgybwcgB128
CsGy2G000840	Watermelon (Charleston Gray)	cgybwcgB151
CsGy2G000840	Watermelon (97103) v1	cgybwmB112
CsGy2G000840	Watermelon (97103) v1	cgybwmB115
CsGy2G000840	Wild cucumber (PI 183967)	cgybcpiB053
CsGy2G000840	Silver-seed gourd	carcgybB0041
CsGy2G000840	Silver-seed gourd	carcgybB0102
CsGy2G000840	Watermelon (97103) v2	cgybwmbB123
CsGy2G000840	Watermelon (97103) v2	cgybwmbB150
CsGy2G000840	Wax gourd	cgybwgoB138
CsGy2G000840	Wax gourd	cgybwgoB202