Carg10839 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10839
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase
Location	Cucurbita_argyrosperma_scaffold_034 : 389529 .. 390716 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCGTTTCTGTGTCGGCTGAGACTACGCGAAACTTAGCAGCGGCCTATCCAATTGAATTTCTGTTTGACCTCGACATGGTTCTGTCCGGCGCCGACGACTTCGGTTGCTGTCAGATCAGCGCTTCGGATTCCCTTGTGGCGGATTTGCCGACGGTGGTGGCCGATGTTTGTGCCGTTTGTTTGGAAGATTTCCGGCCAGATGAGGACGGAAAACAAATCCCCTGCGGACACGTGTACCACGAATCTTGTATTTCCTCTTGGCTCGCCGTCGCCAACTGTTGCCCTCTCTGTCGGTGCCTCATCTCCGGTCAACCGCCGGAATCGCCTTCTTCAACTTTGATCCGACGGTAGAGCTTTTTTTCGTAGATCGCGAGGATCGTTCGATCAAGTAATGTCTGGTTCTTAATTATTGTGATTGCAACTCTTCGCGAAATTAGCTGAAAATTGAACAGACCTGTTCCTTCCTCTGTCGAAATTTCTTTTACAATGTTCCATGAATTTCCCCTAACTTTCAATTTTTGGTATCAACATATGTTTTAAAAAGCCATAAAAATATTTTAATTTTATCAATTCATTGACTCAATTTAAATGACACATTTAATCTGTTAATTTTTTAATTTAAAGAAATATCCGATAAAGTGAACCATCTTCCATTTTTAATTTTATATCTATTATACAAAATTATAAATATTATTGTTTTAATATAAAAATCCATCTTAAATTTAATTTTTAAATTAAAAAAATAACACCCCATATTATATATCTTTTGCATACGTGTTCGATAGTTGAACTTCAACTAAAATTGAAATTATTTTTAAATGTTACAAATGACGAAAATTAAAAGTTAGAAGACTAACAGTTCAATTAATTATTTAAAAAAAATGATGAATATCGTTGACAAATTTATTACAATAATTAATTATTATGATTTTATAAATTCGGGGTAAAATATCTTAAATTATAAAATTCGAGTATATAATTTAGATAATTTCTATTGGTATGTTTTGTTTTCGATTTATTTTCAGGAATTTAATTATTTTATATTTATTTTATAATTTGTTTTGCAAAGCCAGTTGTTCGTCAGTTTGTGGAGCAACGTGTCACAATCAAGTGGCCCAGAAGGTCAATCATGACTTGTATGGTATTGAGTGTGGCGGCACCATTAAGTTAAGGAAAGGGTAA

mRNA sequence

ATGGCTGCCGTTTCTGTGTCGGCTGAGACTACGCGAAACTTAGCAGCGGCCTATCCAATTGAATTTCTGTTTGACCTCGACATGGTTCTGTCCGGCGCCGACGACTTCGGTTGCTGTCAGATCAGCGCTTCGGATTCCCTTGTGGCGGATTTGCCGACGGTGGTGGCCGATGTTTGTGCCGTTTGTTTGGAAGATTTCCGGCCAGATGAGGACGGAAAACAAATCCCCTGCGGACACGTGTACCACGAATCTTGTATTTCCTCTTGGCTCGCCGTCGCCAACTGTTGCCCTCTCTGTCGGTGCCTCATCTCCGGTCAACCGCCGGAATCGCCTTCTTCAACTTTGATCCGACGTTGTTCGTCAGTTTGTGGAGCAACGTGTCACAATCAAGTGGCCCAGAAGGTCAATCATGACTTGTATGGTATTGAGTGTGGCGGCACCATTAAGTTAAGGAAAGGGTAA

Coding sequence (CDS)

ATGGCTGCCGTTTCTGTGTCGGCTGAGACTACGCGAAACTTAGCAGCGGCCTATCCAATTGAATTTCTGTTTGACCTCGACATGGTTCTGTCCGGCGCCGACGACTTCGGTTGCTGTCAGATCAGCGCTTCGGATTCCCTTGTGGCGGATTTGCCGACGGTGGTGGCCGATGTTTGTGCCGTTTGTTTGGAAGATTTCCGGCCAGATGAGGACGGAAAACAAATCCCCTGCGGACACGTGTACCACGAATCTTGTATTTCCTCTTGGCTCGCCGTCGCCAACTGTTGCCCTCTCTGTCGGTGCCTCATCTCCGGTCAACCGCCGGAATCGCCTTCTTCAACTTTGATCCGACGTTGTTCGTCAGTTTGTGGAGCAACGTGTCACAATCAAGTGGCCCAGAAGGTCAATCATGACTTGTATGGTATTGAGTGTGGCGGCACCATTAAGTTAAGGAAAGGGTAA

Protein sequence

MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRRCSSVCGATCHNQVAQKVNHDLYGIECGGTIKLRKG

Homology

[Close]

BLAST of Carg10839 vs. NCBI nr
Match: XP_022946863.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 245.0 bits (624), Expect = 1.7e-61
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 119
           VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLI+GQPPESPSSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Carg10839 vs. NCBI nr
Match: XP_023545409.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.4 bits (620), Expect = 4.9e-61
Identity = 116/118 (98.31%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAAVSVSAETTRNLA AYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 119
           VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLI+GQPPESPSSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Carg10839 vs. NCBI nr
Match: XP_004150849.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus] >KGN60586.1 hypothetical protein Csa_2G000930 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 3.4e-46
Identity = 92/118 (77.97%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAA +V  E T NL + YPIEFLFDLD VLSGADD GCCQI+ SDS VAD PTVVADVCA
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 119
           VCL+DF PDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL++GQPP+   STLIRR
Sbjct: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 115

[Close]

BLAST of Carg10839 vs. NCBI nr
Match: XP_016901521.1 (PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 7.1e-44
Identity = 91/119 (76.47%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGC-CQISASDSLVADLPTVVADVC 60
           MAA +V  E T  L + YPIEFLFDLD VLSGADD  C CQI+ SDS VAD PTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 119
           AVCL+DFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL++GQPP+   STLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 116

[Close]

BLAST of Carg10839 vs. NCBI nr
Match: XP_022154667.1 (E3 ubiquitin-protein ligase RHA1B-like [Momordica charantia])

HSP 1 Score: 180.3 bits (456), Expect = 5.1e-42
Identity = 86/103 (83.50%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISA---SDSLVADLPTVVAD 60
           MAAV+V AETTRNLAAAYP+E LFDLDMVLSG DDFGCC ++A   SDS+VADLPTVVAD
Sbjct: 1   MAAVAVLAETTRNLAAAYPMELLFDLDMVLSGDDDFGCCHVTAANSSDSIVADLPTVVAD 60

Query: 61  VCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR 101
           VCAVC EDFR DE GKQIPCGHVYHE CISSWLAVA+CCPLCR
Sbjct: 61  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCR 103

[Close]

BLAST of Carg10839 vs. TAIR10
Match: AT1G68180.1 (RING/U-box superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 8.8e-12
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 47  LVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR 101
           ++ D   V   VCA+C E+F   E+GK++ C H+YH SCI SWL + N CP+CR
Sbjct: 126 IITDEDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICR 179

[Close]

BLAST of Carg10839 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 9.7e-11
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 43  ASDSLVADLPTVVA---------DVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVA 102
           AS S +  LPTV           + CAVC+++F    D KQ+PC HV+H+ C+  WL + 
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELH 250

Query: 103 NCCPLCRCLISGQPPE 110
           N CP+CR  +    P+
Sbjct: 251 NSCPVCRFELPTDDPD 266

[Close]

BLAST of Carg10839 vs. TAIR10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-10
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 43  ASDSLVADLPTV-VADV-------CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVAN 102
           AS S +  LP V ++D        CAVC E F  + + +++PC H++H+ CI  WL++ N
Sbjct: 175 ASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRN 234

Query: 103 CCPLCRCLISGQP 108
            CP+CR  +  +P
Sbjct: 235 SCPVCRFELPSEP 247

[Close]

BLAST of Carg10839 vs. TAIR10
Match: AT3G60080.1 (RING/U-box superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-10
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 58  VCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR 101
           +CAVC EDF   E  +++PC H+YH  CI  WL+  N CPLCR
Sbjct: 168 LCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCR 210

[Close]

BLAST of Carg10839 vs. TAIR10
Match: AT3G46620.1 (zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-10
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 42  SASDSL----VADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCP 101
           SA +SL    ++D  T     CAVC E F    +G+++PC H++H  CI  WL++ N CP
Sbjct: 194 SAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCP 253

Query: 102 LCRCLISGQP 108
           +CR  +   P
Sbjct: 254 VCRFELPSDP 263

[Close]

BLAST of Carg10839 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 43  ASDSLVADLPTVVA---------DVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVA 102
           AS S +  LPTV           + CAVC+++F    D KQ+PC HV+H+ C+  WL + 
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELH 250

Query: 103 NCCPLCRCLISGQPPE 110
           N CP+CR  +    P+
Sbjct: 251 NSCPVCRFELPTDDPD 266

[Close]

BLAST of Carg10839 vs. Swiss-Prot
Match: sp|Q940T5|RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-09
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 43  ASDSLVADLPTV-VADV-------CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVAN 102
           AS S +  LP V ++D        CAVC E F  + + +++PC H++H+ CI  WL++ N
Sbjct: 175 ASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRN 234

Query: 103 CCPLCRCLISGQP 108
            CP+CR  +  +P
Sbjct: 235 SCPVCRFELPSEP 247

[Close]

BLAST of Carg10839 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-09
Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 59  CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPE 110
           CAVC++DF    + KQ+PC H+YH+ C+  WL + N CP+CR  +    P+
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPD 274

[Close]

BLAST of Carg10839 vs. Swiss-Prot
Match: sp|Q9SNB6|RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 42  SASDSL----VADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCP 101
           SA +SL    ++D  T     CAVC E F    +G+++PC H++H  CI  WL++ N CP
Sbjct: 194 SAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCP 253

Query: 102 LCRCLISGQP 108
           +CR  +   P
Sbjct: 254 VCRFELPSDP 263

[Close]

BLAST of Carg10839 vs. Swiss-Prot
Match: sp|O22283|RHC2A_ARATH (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-08
Identity = 28/73 (38.36%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 38  CCQISASDSLVADLPTVVADV----------CAVCLEDFRPDEDGKQIPCGHVYHESCIS 97
           C    AS S +  LP +  D           CAVC E+F      +++PC H+YH  CI 
Sbjct: 170 CEHPPASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCIL 229

Query: 98  SWLAVANCCPLCR 101
            WLA+ N CP+CR
Sbjct: 230 PWLAIRNSCPVCR 242

[Close]

BLAST of Carg10839 vs. TrEMBL
Match: tr|A0A0A0LKR7|A0A0A0LKR7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.3e-46
Identity = 92/118 (77.97%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAA +V  E T NL + YPIEFLFDLD VLSGADD GCCQI+ SDS VAD PTVVADVCA
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 119
           VCL+DF PDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL++GQPP+   STLIRR
Sbjct: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 115

[Close]

BLAST of Carg10839 vs. TrEMBL
Match: tr|A0A1S4DZX3|A0A1S4DZX3_CUCME (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 4.7e-44
Identity = 91/119 (76.47%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGC-CQISASDSLVADLPTVVADVC 60
           MAA +V  E T  L + YPIEFLFDLD VLSGADD  C CQI+ SDS VAD PTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 119
           AVCL+DFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL++GQPP+   STLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 116

[Close]

BLAST of Carg10839 vs. TrEMBL
Match: tr|A0A0A0LEZ1|A0A0A0LEZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.3e-22
Identity = 60/112 (53.57%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 10  TTRNLAAAY--PIEFLFDLDMVLSGAD--DFGCCQISASDSLVADLPTVVA--DVCAVCL 69
           T+ N AA+Y   IE +FDLD VL+GAD                A+LPTV A  DVCAVC+
Sbjct: 3   TSANYAASYIMDIESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAVCM 62

Query: 70  EDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTL 116
           EDF PDE GKQIPCGHVYH+SC+SSWL++ + CPLCRC I+       S T+
Sbjct: 63  EDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTV 114

[Close]

BLAST of Carg10839 vs. TrEMBL
Match: tr|A0A1U8Q351|A0A1U8Q351_NELNU (E3 ubiquitin-protein ligase RING1-like OS=Nelumbo nucifera OX=4432 GN=LOC104592061 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 9.6e-21
Identity = 52/100 (52.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 16  AAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTV-VADVCAVCLE--DFRPDEDG 75
           + YPI+  FDLD+VL+  +D G  +++ S+SLV+D+PTV  ADVC VC+E  D  P + G
Sbjct: 7   STYPIDLCFDLDLVLTVPEDSG--EVATSESLVSDMPTVYTADVCTVCMEELDAAPGKCG 66

Query: 76  KQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPS 113
           KQ+PCGHVYH +CIS+WL++ + CP+CR  +SG   ES S
Sbjct: 67  KQMPCGHVYHPTCISTWLSLYDSCPVCRSSVSGHVSESES 104

[Close]

BLAST of Carg10839 vs. TrEMBL
Match: tr|A0A2N9GBF9|A0A2N9GBF9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24682 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.6e-20
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 18  YPIEFLFDLDMVLSGADDFG-CCQISASDSLVAD-LPTVVA-----DVCAVCLEDFRPDE 77
           YPI+FLFDLD  L+  DD G   +I A  +LV D +PTV       DVC+VC++ FR  E
Sbjct: 7   YPIDFLFDLDQALTLVDDSGQHIKIEAQKTLVIDHMPTVTPTDNDHDVCSVCIQSFRSGE 66

Query: 78  DGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQ 107
            GKQ+PCGHVYH +CI+SWL+  N CPLCRC IS +
Sbjct: 67  GGKQVPCGHVYHATCIASWLSRHNSCPLCRCKISSE 102

The following BLAST results are available for this feature:

BLAST of Carg10839 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946863.1	1.7e-61	99.15	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]
XP_023545409.1	4.9e-61	98.31	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_004150849.1	3.4e-46	77.97	PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus] >KGN60586.1...	[more]
XP_016901521.1	7.1e-44	76.47	PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo]	[more]
XP_022154667.1	5.1e-42	83.50	E3 ubiquitin-protein ligase RHA1B-like [Momordica charantia]	[more]

BLAST of Carg10839 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68180.1	8.8e-12	48.15	RING/U-box superfamily protein	[more]
AT3G19950.1	9.7e-11	38.16	RING/U-box superfamily protein	[more]
AT5G59550.1	3.7e-10	36.99	zinc finger (C3HC4-type RING finger) family protein	[more]
AT3G60080.1	6.3e-10	53.49	RING/U-box superfamily protein	[more]
AT3G46620.1	8.2e-10	38.57	zinc finger (C3HC4-type RING finger) family protein	[more]

BLAST of Carg10839 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LPN7\|RNG1L_ARATH	1.7e-09	38.16	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
sp\|Q940T5\|RDUF2_ARATH	6.6e-09	36.99	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ...	[more]
sp\|P0CH30\|RING1_GOSHI	6.6e-09	43.14	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
sp\|Q9SNB6\|RDUF1_ARATH	1.5e-08	38.57	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]
sp\|O22283\|RHC2A_ARATH	1.9e-08	38.36	Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]

BLAST of Carg10839 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LKR7\|A0A0A0LKR7_CUCSA	2.3e-46	77.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1	[more]
tr\|A0A1S4DZX3\|A0A1S4DZX3_CUCME	4.7e-44	76.47	RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV...	[more]
tr\|A0A0A0LEZ1\|A0A0A0LEZ1_CUCSA	2.3e-22	53.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 PE=4 SV=1	[more]
tr\|A0A1U8Q351\|A0A1U8Q351_NELNU	9.6e-21	52.00	E3 ubiquitin-protein ligase RING1-like OS=Nelumbo nucifera OX=4432 GN=LOC1045920...	[more]
tr\|A0A2N9GBF9\|A0A2N9GBF9_FAGSY	3.6e-20	55.21	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24682 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10839-RA	Carg10839-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 59..99 e-value: 2.5E-7 score: 40.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 58..100 e-value: 1.1E-11 score: 44.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 59..100 score: 12.784
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 53..116 e-value: 9.2E-16 score: 58.8
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 43..119
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 58..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10839	Cla016793	Watermelon (97103) v1	carwmB0569
Carg10839	Csa2G000920	Cucumber (Chinese Long) v2	carcuB0598
Carg10839	MELO3C004585	Melon (DHL92) v3.5.1	carmeB0577
Carg10839	ClCG11G002160	Watermelon (Charleston Gray)	carwcgB0553
Carg10839	CSPI02G00870	Wild cucumber (PI 183967)	carcpiB0603
Carg10839	Cucsa.116610	Cucumber (Gy14) v1	carcgyB0644
Carg10839	CmaCh05G013660	Cucurbita maxima (Rimu)	carcmaB0802
Carg10839	CmaCh12G012700	Cucurbita maxima (Rimu)	carcmaB0797
Carg10839	CmoCh12G013030	Cucurbita moschata (Rifu)	carcmoB0776
Carg10839	Lsi11G002300	Bottle gourd (USVL1VR-Ls)	carlsiB514
Carg10839	Cp4.1LG11g11400	Cucurbita pepo (Zucchini)	carcpeB0809
Carg10839	Cp4.1LG07g10360	Cucurbita pepo (Zucchini)	carcpeB0817
Carg10839	CsGy2G000840	Cucumber (Gy14) v2	carcgybB0573
Carg10839	MELO3C004585.2	Melon (DHL92) v3.6.1	carmedB0584
Carg10839	CsaV3_2G001940	Cucumber (Chinese Long) v3	carcucB0605
Carg10839	Cla97C11G208560	Watermelon (97103) v2	carwmbB0591

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg10839	Carg18595	Silver-seed gourd	carcarB528

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10839	Cucurbita pepo (Zucchini)	carcpeB0812
Carg10839	Cucurbita pepo (Zucchini)	carcpeB0813
Carg10839	Cucurbita pepo (Zucchini)	carcpeB0814
Carg10839	Wild cucumber (PI 183967)	carcpiB0602
Carg10839	Cucumber (Chinese Long) v2	carcuB0597
Carg10839	Bottle gourd (USVL1VR-Ls)	carlsiB519
Carg10839	Bottle gourd (USVL1VR-Ls)	carlsiB520
Carg10839	Melon (DHL92) v3.5.1	carmeB0573
Carg10839	Melon (DHL92) v3.5.1	carmeB0574
Carg10839	Melon (DHL92) v3.6.1	carmedB0580
Carg10839	Watermelon (Charleston Gray)	carwcgB0555
Carg10839	Watermelon (Charleston Gray)	carwcgB0559
Carg10839	Watermelon (97103) v1	carwmB0565
Carg10839	Watermelon (97103) v1	carwmB0566
Carg10839	Watermelon (97103) v2	carwmbB0593
Carg10839	Watermelon (97103) v2	carwmbB0597
Carg10839	Wax gourd	carwgoB0681
Carg10839	Wax gourd	carwgoB0684
Carg10839	Silver-seed gourd	carcarB044
Carg10839	Silver-seed gourd	carcarB104
Carg10839	Silver-seed gourd	carcarB140
Carg10839	Silver-seed gourd	carcarB233
Carg10839	Cucumber (Gy14) v2	carcgybB0572
Carg10839	Cucumber (Gy14) v1	carcgyB0646
Carg10839	Cucurbita maxima (Rimu)	carcmaB0793
Carg10839	Cucurbita maxima (Rimu)	carcmaB0795
Carg10839	Cucurbita maxima (Rimu)	carcmaB0798
Carg10839	Cucurbita maxima (Rimu)	carcmaB0800
Carg10839	Cucurbita moschata (Rifu)	carcmoB0772
Carg10839	Cucurbita moschata (Rifu)	carcmoB0774
Carg10839	Cucurbita moschata (Rifu)	carcmoB0778
Carg10839	Cucurbita moschata (Rifu)	carcmoB0779