CmoCh12G013030 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G013030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING/U-box superfamily protein
Location	Cmo_Chr12 : 11451950 .. 11452318 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTGTCTTGCCGGAAGCAACAAGATCAGCTTTTGCAGCGAGGTACATCATGGACCTTGAATCGATGTTCGATCTCGACACGGTCCTCACCGGTGCCGACGACTATTATAACGACCAGATCATCACAGAGCCGCCGTCCGTGGTGGTTGCCGATTTGCCAACGGTGGTCACAGACGACGTATGTGCAGTTTGTATGGAGGAATTCCGGGCGGATGAAGGTGGTAAACAGATCCCCTGCGGTCATGTGTACCATCAAACTTGTATATCCTCATGGCTCTCCGTCGGCGGCGACTGTTGCCCTCTCTGCCGCTGCCACGTCTCCTCCGACAACAAATCGGAAACTGCTAAACCCGTTCAGGTTTAG

mRNA sequence

ATGGCTGCTGTCTTGCCGGAAGCAACAAGATCAGCTTTTGCAGCGAGGTACATCATGGACCTTGAATCGATGTTCGATCTCGACACGGTCCTCACCGGTGCCGACGACTATTATAACGACCAGATCATCACAGAGCCGCCGTCCGTGGTGGTTGCCGATTTGCCAACGGTGGTCACAGACGACGTATGTGCAGTTTGTATGGAGGAATTCCGGGCGGATGAAGGTGGTAAACAGATCCCCTGCGGTCATGTGTACCATCAAACTTGTATATCCTCATGGCTCTCCGTCGGCGGCGACTGTTGCCCTCTCTGCCGCTGCCACGTCTCCTCCGACAACAAATCGGAAACTGCTAAACCCGTTCAGGTTTAG

Coding sequence (CDS)

ATGGCTGCTGTCTTGCCGGAAGCAACAAGATCAGCTTTTGCAGCGAGGTACATCATGGACCTTGAATCGATGTTCGATCTCGACACGGTCCTCACCGGTGCCGACGACTATTATAACGACCAGATCATCACAGAGCCGCCGTCCGTGGTGGTTGCCGATTTGCCAACGGTGGTCACAGACGACGTATGTGCAGTTTGTATGGAGGAATTCCGGGCGGATGAAGGTGGTAAACAGATCCCCTGCGGTCATGTGTACCATCAAACTTGTATATCCTCATGGCTCTCCGTCGGCGGCGACTGTTGCCCTCTCTGCCGCTGCCACGTCTCCTCCGACAACAAATCGGAAACTGCTAAACCCGTTCAGGTTTAG

Homology

[Close]

BLAST of CmoCh12G013030 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 44  TEPPSVVVAD-LPTV-VTDDV-------CAVCMEEFRADEGGKQIPCGHVYHQTCISSWL 103
           T P S    D LPTV VT D+       CAVCM+EF      KQ+PC HV+HQ C+  WL
Sbjct: 188 TPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWL 247

Query: 104 SVGGDCCPLCRCHVSSDN 113
            +  + CP+CR  + +D+
Sbjct: 248 EL-HNSCPVCRFELPTDD 264

[Close]

BLAST of CmoCh12G013030 vs. Swiss-Prot
Match: RMR1_ARATH (Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana GN=RMR1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-08
Identity = 20/54 (37.04%), Postives = 34/54 (62.96%), Query Frame = 1


Query: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKS 115
           + CA+C+E++R  E  + +PC H +H  CI SWL+  G  CP+C+  + ++  S
Sbjct: 230 ETCAICLEDYRFGESLRLLPCQHAFHLNCIDSWLTKWGTSCPVCKHDIRTETMS 283

[Close]

BLAST of CmoCh12G013030 vs. Swiss-Prot
Match: RN103_RAT (E3 ubiquitin-protein ligase RNF103 OS=Rattus norvegicus GN=Rnf103 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.8e-08
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 1


Query: 63  CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCR 106
           C VC+E F        +PCGHV+HQ CI  WL+ G  CCP+CR
Sbjct: 618 CVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCR 660

[Close]

BLAST of CmoCh12G013030 vs. Swiss-Prot
Match: RN103_MOUSE (E3 ubiquitin-protein ligase RNF103 OS=Mus musculus GN=Rnf103 PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 9.8e-08
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 1


Query: 63  CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCR 106
           C VC+E F        +PCGHV+HQ CI  WL+ G  CCP+CR
Sbjct: 619 CVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCR 661

[Close]

BLAST of CmoCh12G013030 vs. Swiss-Prot
Match: RN103_HUMAN (E3 ubiquitin-protein ligase RNF103 OS=Homo sapiens GN=RNF103 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.8e-08
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 1


Query: 63  CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCR 106
           C VC+E F        +PCGHV+HQ CI  WL+ G  CCP+CR
Sbjct: 621 CVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCR 663

[Close]

BLAST of CmoCh12G013030 vs. TrEMBL
Match: A0A0A0LEZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000920 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 4.4e-39
Identity = 79/116 (68.10%), Postives = 95/116 (81.90%), Query Frame = 1


Query: 8   ATRSAFAARYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVT-DDVCAVC 67
           AT + +AA YIMD+ESMFDLDTVLTGADD+Y    +  PP V+VA+LPTV   DDVCAVC
Sbjct: 2   ATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVC 61

Query: 68  MEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKSETAKPVQV 123
           ME+F  DEGGKQIPCGHVYHQ+C+SSWLS+  D CPLCRCH++  +K+ET+K VQV
Sbjct: 62  MEDFLPDEGGKQIPCGHVYHQSCLSSWLSI-RDSCPLCRCHIAPGDKTETSKTVQV 116

[Close]

BLAST of CmoCh12G013030 vs. TrEMBL
Match: A0A0A0LKR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.9e-24
Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 1


Query: 21  LESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIP 80
           +E +FDLDTVL+GADD    QI   P    VAD PTVV D VCAVC+++F  DE GKQIP
Sbjct: 20  IEFLFDLDTVLSGADDLGCCQIT--PSDSPVADFPTVVAD-VCAVCLDDFHPDEAGKQIP 79

Query: 81  CGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKSET 117
           CGHVYH++CISSWL+V  DCCPLCRC V+      T
Sbjct: 80  CGHVYHESCISSWLTV-ADCCPLCRCLVAGQPPDST 111

[Close]

BLAST of CmoCh12G013030 vs. TrEMBL
Match: A0A067KCF7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07378 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.9e-16
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 1


Query: 21  LESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD-DVCAVCMEEFRADEGGKQI 80
           ++  FD+D  LT   ++ +   ++E    ++AD+PTV TD D C++CME F +   GK++
Sbjct: 17  IDVSFDMDEALTLPPNFGHQVSVSES---LIADMPTVSTDHDTCSICMESFESGRAGKRV 76

Query: 81  PCGHVYHQTCISSWLSVGGDCCPLCRCHVS 110
           PCGHVYH  CISSWLS   + CPLCRC++S
Sbjct: 77  PCGHVYHAACISSWLS-NCNSCPLCRCNIS 102

[Close]

BLAST of CmoCh12G013030 vs. TrEMBL
Match: B9NAR2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s17790g PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-15
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 21  LESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVT--DDVCAVCMEEFRADEGGKQ 80
           +++ FDLD  LT   +    Q IT   S +VAD+PT +T  D VCAVCME F++  GGK+
Sbjct: 11  IDTSFDLDEALTLPQNL--SQQITYSNSTIVADMPTALTTGDAVCAVCMEGFQSGIGGKK 70

Query: 81  IPCGHVYHQTCISSWLSVGGDCCPLCRCHVS 110
           +PCGHVYH+ CIS+ LS     CPLCRC +S
Sbjct: 71  VPCGHVYHEACISALLS-HRHSCPLCRCDIS 98

[Close]

BLAST of CmoCh12G013030 vs. TrEMBL
Match: D7TBH2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03190 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.8e-15
Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 1


Query: 1   MAAVLPEATRSAFAARYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD 60
           MAA  PE+  S    R+I   +  FDLD  +T  DD       T     +V+ +PTV   
Sbjct: 67  MAAKSPES--SLMVNRHI---DLCFDLDLAITAVDDTSEISKSTS----MVSTMPTVTAV 126

Query: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDN 113
           D C VC E F++ EGGKQ+PCGH YH  CI+SWLS+  + CPLCRC V  ++
Sbjct: 127 DACTVCREGFQSGEGGKQLPCGHFYHAGCIASWLSL-RNSCPLCRCSVPGED 168

[Close]

BLAST of CmoCh12G013030 vs. TAIR10
Match: AT1G68180.1 (AT1G68180.1 RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 1


Query: 48  SVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCH 107
           +V++ D   +V + VCA+C EEF   E GK++ C H+YH +CI SWL++  + CP+CR  
Sbjct: 124 TVIITD-EDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNI-HNTCPICRFE 183

Query: 108 VS 110
           V+
Sbjct: 184 VN 183

[Close]

BLAST of CmoCh12G013030 vs. TAIR10
Match: AT3G30460.1 (AT3G30460.1 RING/U-box superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1


Query: 62  VCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDN 113
           VCA+C EE  A+E   ++PC H YH+ CIS+WLS   + CPLCR +V   N
Sbjct: 96  VCAICREELAANERLSELPCRHYYHKECISNWLS-NRNTCPLCRHNVELPN 145

[Close]

BLAST of CmoCh12G013030 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-09
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 44  TEPPSVVVAD-LPTV-VTDDV-------CAVCMEEFRADEGGKQIPCGHVYHQTCISSWL 103
           T P S    D LPTV VT D+       CAVCM+EF      KQ+PC HV+HQ C+  WL
Sbjct: 188 TPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWL 247

Query: 104 SVGGDCCPLCRCHVSSDN 113
            +  + CP+CR  + +D+
Sbjct: 248 EL-HNSCPVCRFELPTDD 264

[Close]

BLAST of CmoCh12G013030 vs. TAIR10
Match: AT5G66160.1 (AT5G66160.1 receptor homology region transmembrane domain ring H2 motif protein 1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-09
Identity = 20/54 (37.04%), Postives = 34/54 (62.96%), Query Frame = 1


Query: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKS 115
           + CA+C+E++R  E  + +PC H +H  CI SWL+  G  CP+C+  + ++  S
Sbjct: 230 ETCAICLEDYRFGESLRLLPCQHAFHLNCIDSWLTKWGTSCPVCKHDIRTETMS 283

[Close]

BLAST of CmoCh12G013030 vs. TAIR10
Match: AT3G02340.1 (AT3G02340.1 RING/U-box superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-09
Identity = 34/102 (33.33%), Postives = 51/102 (50.00%), Query Frame = 1


Query: 21  LESMFDLDTVLTGADDYYNDQIITEPPSV--VVADLPTVVT--------DDVCAVCMEEF 80
           L  MFD +T + G            PP+   V+ DLP V          ++VCAVC +E 
Sbjct: 294 LGQMFDDETGIRG-----------NPPAAKSVIQDLPVVELAVEELDKGNNVCAVCKDEM 353

Query: 81  RADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDN 113
             +E  +++PC H YH  CI  WL +  + CP+CR  + +D+
Sbjct: 354 LVEEKVRRLPCSHFYHGECIIPWLGI-RNTCPVCRYELPTDD 383

[Close]

BLAST of CmoCh12G013030 vs. NCBI nr
Match: gi|778673949|ref|XP_011650093.1| (PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 6.3e-39
Identity = 79/116 (68.10%), Postives = 95/116 (81.90%), Query Frame = 1


Query: 8   ATRSAFAARYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVT-DDVCAVC 67
           AT + +AA YIMD+ESMFDLDTVLTGADD+Y    +  PP V+VA+LPTV   DDVCAVC
Sbjct: 2   ATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVC 61

Query: 68  MEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKSETAKPVQV 123
           ME+F  DEGGKQIPCGHVYHQ+C+SSWLS+  D CPLCRCH++  +K+ET+K VQV
Sbjct: 62  MEDFLPDEGGKQIPCGHVYHQSCLSSWLSI-RDSCPLCRCHIAPGDKTETSKTVQV 116

[Close]

BLAST of CmoCh12G013030 vs. NCBI nr
Match: gi|449466270|ref|XP_004150849.1| (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-23
Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 1


Query: 21  LESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIP 80
           +E +FDLDTVL+GADD    QI   P    VAD PTVV D VCAVC+++F  DE GKQIP
Sbjct: 20  IEFLFDLDTVLSGADDLGCCQIT--PSDSPVADFPTVVAD-VCAVCLDDFHPDEAGKQIP 79

Query: 81  CGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKSET 117
           CGHVYH++CISSWL+V  DCCPLCRC V+      T
Sbjct: 80  CGHVYHESCISSWLTV-ADCCPLCRCLVAGQPPDST 111

[Close]

BLAST of CmoCh12G013030 vs. NCBI nr
Match: gi|643724606|gb|KDP33807.1| (hypothetical protein JCGZ_07378 [Jatropha curcas])

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 1


Query: 21  LESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD-DVCAVCMEEFRADEGGKQI 80
           ++  FD+D  LT   ++ +   ++E    ++AD+PTV TD D C++CME F +   GK++
Sbjct: 17  IDVSFDMDEALTLPPNFGHQVSVSES---LIADMPTVSTDHDTCSICMESFESGRAGKRV 76

Query: 81  PCGHVYHQTCISSWLSVGGDCCPLCRCHVS 110
           PCGHVYH  CISSWLS   + CPLCRC++S
Sbjct: 77  PCGHVYHAACISSWLS-NCNSCPLCRCNIS 102

[Close]

BLAST of CmoCh12G013030 vs. NCBI nr
Match: gi|566176809|ref|XP_006381766.1| (hypothetical protein POPTR_0006s17790g [Populus trichocarpa])

HSP 1 Score: 89.4 bits (220), Expect = 4.9e-15
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 21  LESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVT--DDVCAVCMEEFRADEGGKQ 80
           +++ FDLD  LT   +    Q IT   S +VAD+PT +T  D VCAVCME F++  GGK+
Sbjct: 11  IDTSFDLDEALTLPQNL--SQQITYSNSTIVADMPTALTTGDAVCAVCMEGFQSGIGGKK 70

Query: 81  IPCGHVYHQTCISSWLSVGGDCCPLCRCHVS 110
           +PCGHVYH+ CIS+ LS     CPLCRC +S
Sbjct: 71  VPCGHVYHEACISALLS-HRHSCPLCRCDIS 98

[Close]

BLAST of CmoCh12G013030 vs. NCBI nr
Match: gi|731406754|ref|XP_003633119.2| (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Vitis vinifera])

HSP 1 Score: 88.6 bits (218), Expect = 8.3e-15
Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 1


Query: 1   MAAVLPEATRSAFAARYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD 60
           MAA  PE+  S    R+I   +  FDLD  +T  DD       T     +V+ +PTV   
Sbjct: 67  MAAKSPES--SLMVNRHI---DLCFDLDLAITAVDDTSEISKSTS----MVSTMPTVTAV 126

Query: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDN 113
           D C VC E F++ EGGKQ+PCGH YH  CI+SWLS+  + CPLCRC V  ++
Sbjct: 127 DACTVCREGFQSGEGGKQLPCGHFYHAGCIASWLSL-RNSCPLCRCSVPGED 168

The following BLAST results are available for this feature:

BLAST of CmoCh12G013030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNG1L_ARATH	2.6e-08	43.59	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1...	[more]
RMR1_ARATH	3.4e-08	37.04	Receptor homology region, transmembrane domain- and RING domain-containing prote...	[more]
RN103_RAT	9.8e-08	51.16	E3 ubiquitin-protein ligase RNF103 OS=Rattus norvegicus GN=Rnf103 PE=2 SV=1	[more]
RN103_MOUSE	9.8e-08	51.16	E3 ubiquitin-protein ligase RNF103 OS=Mus musculus GN=Rnf103 PE=2 SV=2	[more]
RN103_HUMAN	9.8e-08	51.16	E3 ubiquitin-protein ligase RNF103 OS=Homo sapiens GN=RNF103 PE=1 SV=1	[more]

BLAST of CmoCh12G013030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEZ1_CUCSA	4.4e-39	68.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000920 PE=4 SV=1	[more]
A0A0A0LKR7_CUCSA	8.9e-24	61.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000930 PE=4 SV=1	[more]
A0A067KCF7_JATCU	8.9e-16	46.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07378 PE=4 SV=1	[more]
B9NAR2_POPTR	3.4e-15	51.65	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s17790g PE=4 SV=1	[more]
D7TBH2_VITVI	5.8e-15	44.64	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03190 PE=4 SV=...	[more]

BLAST of CmoCh12G013030 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68180.1	1.3e-10	43.55	RING/U-box superfamily protein	[more]
AT3G30460.1	1.1e-09	50.98	RING/U-box superfamily protein	[more]
AT3G19950.1	1.5e-09	43.59	RING/U-box superfamily protein	[more]
AT5G66160.1	1.9e-09	37.04	receptor homology region transmembrane domain ring H2 motif protein ...	[more]
AT3G02340.1	4.2e-09	33.33	RING/U-box superfamily protein	[more]

BLAST of CmoCh12G013030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673949\|ref\|XP_011650093.1\|	6.3e-39	68.10	PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus]	[more]
gi\|449466270\|ref\|XP_004150849.1\|	1.3e-23	61.46	PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus]	[more]
gi\|643724606\|gb\|KDP33807.1\|	1.3e-15	46.67	hypothetical protein JCGZ_07378 [Jatropha curcas]	[more]
gi\|566176809\|ref\|XP_006381766.1\|	4.9e-15	51.65	hypothetical protein POPTR_0006s17790g [Populus trichocarpa]	[more]
gi\|731406754\|ref\|XP_003633119.2\|	8.3e-15	44.64	PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0044267	cellular protein metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G013030.1	CmoCh12G013030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 62..105 score: 3.7
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 63..104 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 63..105 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 59..114 score: 4.7
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 16..108 score: 2.2
None	No IPR available	PANTHER	PTHR22763:SF87	SUBFAMILY NOT NAMED	coord: 16..108 score: 2.2
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 57..110 score: 1.87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G013030	Cucsa.116610	Cucumber (Gy14) v1	cgycmoB0281
CmoCh12G013030	CmaCh12G012700	Cucurbita maxima (Rimu)	cmacmoB177
CmoCh12G013030	CmaCh05G013660	Cucurbita maxima (Rimu)	cmacmoB763
CmoCh12G013030	Cla016793	Watermelon (97103) v1	cmowmB159
CmoCh12G013030	Csa2G000920	Cucumber (Chinese Long) v2	cmocuB157
CmoCh12G013030	MELO3C004585	Melon (DHL92) v3.5.1	cmomeB161
CmoCh12G013030	ClCG11G002160	Watermelon (Charleston Gray)	cmowcgB134
CmoCh12G013030	CSPI02G00870	Wild cucumber (PI 183967)	cmocpiB159
CmoCh12G013030	Lsi11G002300	Bottle gourd (USVL1VR-Ls)	cmolsiB148
CmoCh12G013030	Cp4.1LG11g11400	Cucurbita pepo (Zucchini)	cmocpeB147
CmoCh12G013030	Cp4.1LG07g10360	Cucurbita pepo (Zucchini)	cmocpeB176
CmoCh12G013030	MELO3C004585.2	Melon (DHL92) v3.6.1	cmomedB177
CmoCh12G013030	CsaV3_2G001940	Cucumber (Chinese Long) v3	cmocucB0185
CmoCh12G013030	Cla97C11G208560	Watermelon (97103) v2	cmowmbB156
CmoCh12G013030	CsGy2G000840	Cucumber (Gy14) v2	cgybcmoB170
CmoCh12G013030	Carg18595	Silver-seed gourd	carcmoB1207
CmoCh12G013030	Carg10839	Silver-seed gourd	carcmoB0776

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G013030	Watermelon (97103) v2	cmowmbB164
CmoCh12G013030	Watermelon (97103) v2	cmowmbB176
CmoCh12G013030	Wax gourd	cmowgoB0227
CmoCh12G013030	Cucurbita moschata (Rifu)	cmocmoB050
CmoCh12G013030	Cucurbita moschata (Rifu)	cmocmoB080
CmoCh12G013030	Cucurbita moschata (Rifu)	cmocmoB143
CmoCh12G013030	Cucurbita moschata (Rifu)	cmocmoB148
CmoCh12G013030	Cucumber (Gy14) v1	cgycmoB0807
CmoCh12G013030	Cucurbita maxima (Rimu)	cmacmoB080
CmoCh12G013030	Cucurbita maxima (Rimu)	cmacmoB121
CmoCh12G013030	Wild cucumber (PI 183967)	cmocpiB145
CmoCh12G013030	Cucumber (Chinese Long) v2	cmocuB145
CmoCh12G013030	Melon (DHL92) v3.5.1	cmomeB141
CmoCh12G013030	Watermelon (Charleston Gray)	cmowcgB147
CmoCh12G013030	Watermelon (Charleston Gray)	cmowcgB160
CmoCh12G013030	Watermelon (97103) v1	cmowmB142
CmoCh12G013030	Watermelon (97103) v1	cmowmB144
CmoCh12G013030	Cucurbita pepo (Zucchini)	cmocpeB160
CmoCh12G013030	Cucurbita pepo (Zucchini)	cmocpeB170
CmoCh12G013030	Bottle gourd (USVL1VR-Ls)	cmolsiB169
CmoCh12G013030	Bottle gourd (USVL1VR-Ls)	cmolsiB174
CmoCh12G013030	Cucumber (Gy14) v2	cgybcmoB051
CmoCh12G013030	Melon (DHL92) v3.6.1	cmomedB155
CmoCh12G013030	Silver-seed gourd	carcmoB0051
CmoCh12G013030	Silver-seed gourd	carcmoB0130
CmoCh12G013030	Silver-seed gourd	carcmoB0279