CSPI02G00870 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G00870
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionE3 ubiquitin-protein ligase
LocationChr2 : 525397 .. 526023 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTTACAAATCGATAAAAGAAAAAATAAACAAATACTGATATCCATGGCTACATCAGCTAATTATGCAGCAAGTTACATCATGGACATTGAATCAATGTTCGATCTCGACACGGTCCTCACCGGAGCCGATGACTTCTATTACTTCCACACCGTTGTAGCGCCACCACCCGTGATGGTTGCTGAATTACCGACAGTGGCTGCAGCGGACGATGTATGTGCGGTTTGTATGGAGGATTTTCTGCCGGATGAAGGCGGTAAACAGATCCCATGTGGCCATGTGTACCATCAATCTTGCTTATCGTCTTGGCTCTCTATCCGCGACTCTTGCCCTCTCTGCCGCTGTCATATCGCCCCCGGTGACAAAACGGAGACGTCCAAAACCGTACAAGTTTAGTTTGGTTTTGTGCTAGATTTGAATATGAAATTTGGAATTCGGCTATCATTCAATCAAAATGTGGTAAAGATTCAAAAGCTCACGTTTTGAACAACTTGTGTATTCGATTCAACGATTATTAAGAGCAAACAAGTTCTGGATGTGTATATTGTTCTAACGATCTCATGACAGTAATAATAATATATGATTGTTATAAGAACTTTATGGAATGAACTTTCCTTCACTGGTCT

mRNA sequence

ATGGCTACATCAGCTAATTATGCAGCAAGTTACATCATGGACATTGAATCAATGTTCGATCTCGACACGGTCCTCACCGGAGCCGATGACTTCTATTACTTCCACACCGTTGTAGCGCCACCACCCGTGATGGTTGCTGAATTACCGACAGTGGCTGCAGCGGACGATGTATGTGCGGTTTGTATGGAGGATTTTCTGCCGGATGAAGGCGGTAAACAGATCCCATGTGGCCATGTGTACCATCAATCTTGCTTATCGTCTTGGCTCTCTATCCGCGACTCTTGCCCTCTCTGCCGCTGTCATATCGCCCCCGGTGACAAAACGGAGACGTCCAAAACCGTACAAGTTTAG

Coding sequence (CDS)

ATGGCTACATCAGCTAATTATGCAGCAAGTTACATCATGGACATTGAATCAATGTTCGATCTCGACACGGTCCTCACCGGAGCCGATGACTTCTATTACTTCCACACCGTTGTAGCGCCACCACCCGTGATGGTTGCTGAATTACCGACAGTGGCTGCAGCGGACGATGTATGTGCGGTTTGTATGGAGGATTTTCTGCCGGATGAAGGCGGTAAACAGATCCCATGTGGCCATGTGTACCATCAATCTTGCTTATCGTCTTGGCTCTCTATCCGCGACTCTTGCCCTCTCTGCCGCTGTCATATCGCCCCCGGTGACAAAACGGAGACGTCCAAAACCGTACAAGTTTAG
Homology
[Close]
BLAST of CSPI02G00870 vs. Swiss-Prot
Match: RN115_HUMAN (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-11
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 1 

Query: 40  PPPV---MVAELPTVAAADDV------CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLS 99
           PPP     +  LPTV    +       C VC ED+  +E  +Q+PC H +H SC+  WL 
Sbjct: 201 PPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLE 260

Query: 100 IRDSCPLCRCHIAPGDKTETSKTVQ 116
           + D+CP+CR  +   D T  S++ +
Sbjct: 261 LHDTCPVCRKSLNGEDSTRQSQSTE 285

[Close]
BLAST of CSPI02G00870 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.1e-11
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1 

Query: 58  CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQ 116
           CAVCM+DF      KQ+PC H+YH+ CL  WL + +SCP+CR H  P D  +  + V+
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCR-HELPTDDPDYERRVR 280

[Close]
BLAST of CSPI02G00870 vs. Swiss-Prot
Match: RN115_MOUSE (E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-10
Identity = 29/83 (34.94%), Postives = 44/83 (53.01%), Query Frame = 1 

Query: 40  PPPV---MVAELPTVAAADDV------CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLS 99
           PPP     +  LPTV    +       C VC ED+  +E  +Q+PC H +H SC+  WL 
Sbjct: 202 PPPADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLE 261

Query: 100 IRDSCPLCRCHIAPGDKTETSKT 114
           + D+CP+CR  +   D T  +++
Sbjct: 262 LHDTCPVCRKSLNGEDSTRQTQS 284

[Close]
BLAST of CSPI02G00870 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-10
Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 1 

Query: 48  LPTVAAADDV-------CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRC 107
           LPTV    D+       CAVCM++F      KQ+PC HV+HQ CL  WL + +SCP+CR 
Sbjct: 199 LPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRF 258

[Close]
BLAST of CSPI02G00870 vs. Swiss-Prot
Match: ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.5e-10
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 36  TVVAPPPVMVAELPTVAAADDVCAVCMEDFLPDEGGKQIP-CGHVYHQSCLSSWLSIRDS 95
           TV+   P+ V  + T  +  + C+VC+ +F  D+ G+ +P CGHV+H  C+ +W   R S
Sbjct: 91  TVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSS 150

Query: 96  CPLCRCHIAP 105
           CPLCR  + P
Sbjct: 151 CPLCRAPVQP 160

[Close]
BLAST of CSPI02G00870 vs. TrEMBL
Match: A0A0A0LEZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000920 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV 60
           MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV
Sbjct: 1   MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV 60

Query: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 117
           CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV
Sbjct: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 116

[Close]
BLAST of CSPI02G00870 vs. TrEMBL
Match: A0A0A0LKR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-24
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 1 

Query: 15  IESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCMEDFLPDEGGKQI 74
           IE +FDLDTVL+GADD       + P    VA+ PTV A  DVCAVC++DF PDE GKQI
Sbjct: 20  IEFLFDLDTVLSGADDLGCCQ--ITPSDSPVADFPTVVA--DVCAVCLDDFHPDEAGKQI 79

Query: 75  PCGHVYHQSCLSSWLSIRDSCPLCRCHIA--PGDKT 109
           PCGHVYH+SC+SSWL++ D CPLCRC +A  P D T
Sbjct: 80  PCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDST 111

[Close]
BLAST of CSPI02G00870 vs. TrEMBL
Match: D7TBH2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03190 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.1e-18
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1 

Query: 15  IESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCMEDFLPDEGGKQI 74
           I+  FDLD  +T  DD     + ++    MV+ +PTV A D  C VC E F   EGGKQ+
Sbjct: 82  IDLCFDLDLAITAVDDT----SEISKSTSMVSTMPTVTAVD-ACTVCREGFQSGEGGKQL 141

Query: 75  PCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGD 107
           PCGH YH  C++SWLS+R+SCPLCRC + PG+
Sbjct: 142 PCGHFYHAGCIASWLSLRNSCPLCRCSV-PGE 167

[Close]
BLAST of CSPI02G00870 vs. TrEMBL
Match: A0A067KCF7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07378 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.8e-16
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 1 

Query: 1   MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV 60
           +++ +N A S  + I+  FD+D  LT   +F +    V+    ++A++PTV+   D C++
Sbjct: 4   VSSDSNTAFSTCL-IDVSFDMDEALTLPPNFGH---QVSVSESLIADMPTVSTDHDTCSI 63

Query: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIA 104
           CME F     GK++PCGHVYH +C+SSWLS  +SCPLCRC+I+
Sbjct: 64  CMESFESGRAGKRVPCGHVYHAACISSWLSNCNSCPLCRCNIS 102

[Close]
BLAST of CSPI02G00870 vs. TrEMBL
Match: A0A067KPM6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07310 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.0e-16
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1 

Query: 13  MDIESMFDLDTVLTGADDFYYFHTVVAPPPV--MVAELPTVAAADDVCAVCMEDFLPDEG 72
           M +   FDL    +G D+      + A   +  ++A +PTV+  D+VC VCME F    G
Sbjct: 19  MAVNISFDLHETPSGTDNLSRRSRITAASSINDLIAGMPTVSTNDEVCIVCMEGFRSSVG 78

Query: 73  GKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPG 106
           GK+IPCGH+YH  C+SSWL   +SCPLCR +I+ G
Sbjct: 79  GKRIPCGHIYHSDCISSWLCRSNSCPLCRINISDG 113

[Close]
BLAST of CSPI02G00870 vs. TAIR10
Match: AT3G02340.1 (AT3G02340.1 RING/U-box superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 34/103 (33.01%), Postives = 56/103 (54.37%), Query Frame = 1 

Query: 4   SANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCME 63
           S +Y A  I+    MFD +T + G        +V+   PV+   +  +   ++VCAVC +
Sbjct: 285 SGHYDADAILG--QMFDDETGIRGNPPAA--KSVIQDLPVVELAVEELDKGNNVCAVCKD 344

Query: 64  DFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGD 107
           + L +E  +++PC H YH  C+  WL IR++CP+CR  +   D
Sbjct: 345 EMLVEEKVRRLPCSHFYHGECIIPWLGIRNTCPVCRYELPTDD 383

[Close]
BLAST of CSPI02G00870 vs. TAIR10
Match: AT1G68180.1 (AT1G68180.1 RING/U-box superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1 

Query: 38  VAPPPVM---VAELPTVAAADD------VCAVCMEDFLPDEGGKQIPCGHVYHQSCLSSW 97
           + PPP     +  + TV   D+      VCA+C E+F   E GK++ C H+YH SC+ SW
Sbjct: 109 IGPPPASQSAIEAVRTVIITDEDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSW 168

Query: 98  LSIRDSCPLCRCHIAPG 106
           L+I ++CP+CR  +  G
Sbjct: 169 LNIHNTCPICRFEVNLG 185

[Close]
BLAST of CSPI02G00870 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 1 

Query: 48  LPTVAAADDV-------CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRC 107
           LPTV    D+       CAVCM++F      KQ+PC HV+HQ CL  WL + +SCP+CR 
Sbjct: 199 LPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRF 258

[Close]
BLAST of CSPI02G00870 vs. TAIR10
Match: AT4G26400.2 (AT4G26400.2 RING/U-box superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 25/69 (36.23%), Postives = 43/69 (62.32%), Query Frame = 1 

Query: 44  MVAELPTVAAADDV-CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHI 103
           +V  LPTV  ++ + C++C++DF      K++PC H +H  C+  WL +  SCP+CR  +
Sbjct: 226 VVDNLPTVKISESLQCSICLDDFDKGSEAKEMPCKHKFHIRCIVPWLELHSSCPVCRYEL 285

Query: 104 APGDKTETS 112
            P D+T+ +
Sbjct: 286 PPDDETKVN 294

[Close]
BLAST of CSPI02G00870 vs. TAIR10
Match: AT3G60080.1 (AT3G60080.1 RING/U-box superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1 

Query: 57  VCAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCR 100
           +CAVC EDF+  E  +++PC H+YH  C+  WLS  +SCPLCR
Sbjct: 168 LCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCR 210

[Close]
BLAST of CSPI02G00870 vs. NCBI nr
Match: gi|778673949|ref|XP_011650093.1| (PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 1.7e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV 60
           MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV
Sbjct: 1   MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV 60

Query: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 117
           CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV
Sbjct: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 116

[Close]
BLAST of CSPI02G00870 vs. NCBI nr
Match: gi|449466270|ref|XP_004150849.1| (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-24
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 1 

Query: 15  IESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCMEDFLPDEGGKQI 74
           IE +FDLDTVL+GADD       + P    VA+ PTV A  DVCAVC++DF PDE GKQI
Sbjct: 20  IEFLFDLDTVLSGADDLGCCQ--ITPSDSPVADFPTVVA--DVCAVCLDDFHPDEAGKQI 79

Query: 75  PCGHVYHQSCLSSWLSIRDSCPLCRCHIA--PGDKT 109
           PCGHVYH+SC+SSWL++ D CPLCRC +A  P D T
Sbjct: 80  PCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDST 111

[Close]
BLAST of CSPI02G00870 vs. NCBI nr
Match: gi|731406754|ref|XP_003633119.2| (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Vitis vinifera])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1 

Query: 15  IESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCMEDFLPDEGGKQI 74
           I+  FDLD  +T  DD     + ++    MV+ +PTV A D  C VC E F   EGGKQ+
Sbjct: 82  IDLCFDLDLAITAVDDT----SEISKSTSMVSTMPTVTAVD-ACTVCREGFQSGEGGKQL 141

Query: 75  PCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGD 107
           PCGH YH  C++SWLS+R+SCPLCRC + PG+
Sbjct: 142 PCGHFYHAGCIASWLSLRNSCPLCRCSV-PGE 167

[Close]
BLAST of CSPI02G00870 vs. NCBI nr
Match: gi|643724606|gb|KDP33807.1| (hypothetical protein JCGZ_07378 [Jatropha curcas])

HSP 1 Score: 92.4 bits (228), Expect = 5.5e-16
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 1 

Query: 1   MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV 60
           +++ +N A S  + I+  FD+D  LT   +F +    V+    ++A++PTV+   D C++
Sbjct: 4   VSSDSNTAFSTCL-IDVSFDMDEALTLPPNFGH---QVSVSESLIADMPTVSTDHDTCSI 63

Query: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIA 104
           CME F     GK++PCGHVYH +C+SSWLS  +SCPLCRC+I+
Sbjct: 64  CMESFESGRAGKRVPCGHVYHAACISSWLSNCNSCPLCRCNIS 102

[Close]
BLAST of CSPI02G00870 vs. NCBI nr
Match: gi|643724538|gb|KDP33739.1| (hypothetical protein JCGZ_07310 [Jatropha curcas])

HSP 1 Score: 92.0 bits (227), Expect = 7.2e-16
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1 

Query: 13  MDIESMFDLDTVLTGADDFYYFHTVVAPPPV--MVAELPTVAAADDVCAVCMEDFLPDEG 72
           M +   FDL    +G D+      + A   +  ++A +PTV+  D+VC VCME F    G
Sbjct: 19  MAVNISFDLHETPSGTDNLSRRSRITAASSINDLIAGMPTVSTNDEVCIVCMEGFRSSVG 78

Query: 73  GKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPG 106
           GK+IPCGH+YH  C+SSWL   +SCPLCR +I+ G
Sbjct: 79  GKRIPCGHIYHSDCISSWLCRSNSCPLCRINISDG 113

The following BLAST results are available for this feature:
BLAST of CSPI02G00870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RN115_HUMAN3.1e-1135.29E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2[more]
RING1_GOSHI9.1e-1146.55E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RN115_MOUSE1.6e-1034.94E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1 SV=1[more]
RNG1L_ARATH2.0e-1043.94E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
ATL5_ARATH4.5e-1038.57RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1[more]
BLAST of CSPI02G00870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEZ1_CUCSA1.2e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000920 PE=4 SV=1[more]
A0A0A0LKR7_CUCSA1.0e-2461.46Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000930 PE=4 SV=1[more]
D7TBH2_VITVI9.1e-1850.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03190 PE=4 SV=... [more]
A0A067KCF7_JATCU3.8e-1642.72Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07378 PE=4 SV=1[more]
A0A067KPM6_JATCU5.0e-1644.21Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07310 PE=4 SV=1[more]
BLAST of CSPI02G00870 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G02340.11.1e-1133.01 RING/U-box superfamily protein[more]
AT1G68180.11.1e-1138.96 RING/U-box superfamily protein[more]
AT3G19950.11.1e-1143.94 RING/U-box superfamily protein[more]
AT4G26400.21.1e-1136.23 RING/U-box superfamily protein[more]
AT3G60080.11.9e-1153.49 RING/U-box superfamily protein[more]
BLAST of CSPI02G00870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778673949|ref|XP_011650093.1|1.7e-62100.00PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus][more]
gi|449466270|ref|XP_004150849.1|1.4e-2461.46PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus][more]
gi|731406754|ref|XP_003633119.2|1.3e-1750.00PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Vitis vinifera][more]
gi|643724606|gb|KDP33807.1|5.5e-1642.72hypothetical protein JCGZ_07378 [Jatropha curcas][more]
gi|643724538|gb|KDP33739.1|7.2e-1644.21hypothetical protein JCGZ_07310 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0044267 cellular protein metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G00870.1CSPI02G00870.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 57..99
score: 5.1
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 58..98
score: 5.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 58..99
score: 12
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 57..99
score:
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 54..101
score: 5.0
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 44..106
score: 6.9
NoneNo IPR availablePANTHERPTHR22763:SF87SUBFAMILY NOT NAMEDcoord: 44..106
score: 6.9
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 48..104
score: 2.83

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G00870Cla016793Watermelon (97103) v1cpiwmB165
CSPI02G00870Csa2G000920Cucumber (Chinese Long) v2cpicuB065
CSPI02G00870MELO3C004585Melon (DHL92) v3.5.1cpimeB140
CSPI02G00870ClCG11G002160Watermelon (Charleston Gray)cpiwcgB102
CSPI02G00870Lsi11G002300Bottle gourd (USVL1VR-Ls)cpilsiB096
CSPI02G00870MELO3C004585.2Melon (DHL92) v3.6.1cpimedB133
CSPI02G00870CsaV3_2G001940Cucumber (Chinese Long) v3cpicucB080
CSPI02G00870Cla97C11G208560Watermelon (97103) v2cpiwmbB105
CSPI02G00870BhiUN55G9Wax gourdcpiwgoB170
CSPI02G00870Cucsa.116610Cucumber (Gy14) v1cgycpiB152
CSPI02G00870CmaCh05G013660Cucurbita maxima (Rimu)cmacpiB800
CSPI02G00870CmaCh12G012700Cucurbita maxima (Rimu)cmacpiB174
CSPI02G00870CmoCh12G013030Cucurbita moschata (Rifu)cmocpiB159
CSPI02G00870Cp4.1LG07g10360Cucurbita pepo (Zucchini)cpecpiB822
CSPI02G00870Cp4.1LG11g11400Cucurbita pepo (Zucchini)cpecpiB100
CSPI02G00870CsGy2G000840Cucumber (Gy14) v2cgybcpiB056
CSPI02G00870Carg18595Silver-seed gourdcarcpiB0934
CSPI02G00870Carg10839Silver-seed gourdcarcpiB0603
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G00870Cucumber (Gy14) v1cgycpiB438
CSPI02G00870Cucurbita maxima (Rimu)cmacpiB073
CSPI02G00870Cucurbita maxima (Rimu)cmacpiB116
CSPI02G00870Cucurbita moschata (Rifu)cmocpiB066
CSPI02G00870Cucurbita moschata (Rifu)cmocpiB108
CSPI02G00870Cucurbita moschata (Rifu)cmocpiB158
CSPI02G00870Cucurbita moschata (Rifu)cmocpiB787
CSPI02G00870Cucumber (Chinese Long) v2cpicuB061
CSPI02G00870Melon (DHL92) v3.5.1cpimeB111
CSPI02G00870Melon (DHL92) v3.5.1cpimeB131
CSPI02G00870Watermelon (Charleston Gray)cpiwcgB140
CSPI02G00870Watermelon (Charleston Gray)cpiwcgB165
CSPI02G00870Watermelon (97103) v1cpiwmB119
CSPI02G00870Watermelon (97103) v1cpiwmB123
CSPI02G00870Cucurbita pepo (Zucchini)cpecpiB370
CSPI02G00870Cucurbita pepo (Zucchini)cpecpiB665
CSPI02G00870Bottle gourd (USVL1VR-Ls)cpilsiB133
CSPI02G00870Bottle gourd (USVL1VR-Ls)cpilsiB138
CSPI02G00870Melon (DHL92) v3.6.1cpimedB106
CSPI02G00870Cucumber (Gy14) v2cgybcpiB017
CSPI02G00870Cucumber (Gy14) v2cgybcpiB104
CSPI02G00870Silver-seed gourdcarcpiB0044
CSPI02G00870Silver-seed gourdcarcpiB0107
CSPI02G00870Silver-seed gourdcarcpiB0224
CSPI02G00870Watermelon (97103) v2cpiwmbB132
CSPI02G00870Watermelon (97103) v2cpiwmbB159
CSPI02G00870Wax gourdcpiwgoB144
CSPI02G00870Wax gourdcpiwgoB211
CSPI02G00870Wild cucumber (PI 183967)cpicpiB010