CSPI02G00870 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G00870
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	E3 ubiquitin-protein ligase
Location	Chr2 : 525397 .. 526023 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTACAAATCGATAAAAGAAAAAATAAACAAATACTGATATCCATGGCTACATCAGCTAATTATGCAGCAAGTTACATCATGGACATTGAATCAATGTTCGATCTCGACACGGTCCTCACCGGAGCCGATGACTTCTATTACTTCCACACCGTTGTAGCGCCACCACCCGTGATGGTTGCTGAATTACCGACAGTGGCTGCAGCGGACGATGTATGTGCGGTTTGTATGGAGGATTTTCTGCCGGATGAAGGCGGTAAACAGATCCCATGTGGCCATGTGTACCATCAATCTTGCTTATCGTCTTGGCTCTCTATCCGCGACTCTTGCCCTCTCTGCCGCTGTCATATCGCCCCCGGTGACAAAACGGAGACGTCCAAAACCGTACAAGTTTAGTTTGGTTTTGTGCTAGATTTGAATATGAAATTTGGAATTCGGCTATCATTCAATCAAAATGTGGTAAAGATTCAAAAGCTCACGTTTTGAACAACTTGTGTATTCGATTCAACGATTATTAAGAGCAAACAAGTTCTGGATGTGTATATTGTTCTAACGATCTCATGACAGTAATAATAATATATGATTGTTATAAGAACTTTATGGAATGAACTTTCCTTCACTGGTCT

mRNA sequence

ATGGCTACATCAGCTAATTATGCAGCAAGTTACATCATGGACATTGAATCAATGTTCGATCTCGACACGGTCCTCACCGGAGCCGATGACTTCTATTACTTCCACACCGTTGTAGCGCCACCACCCGTGATGGTTGCTGAATTACCGACAGTGGCTGCAGCGGACGATGTATGTGCGGTTTGTATGGAGGATTTTCTGCCGGATGAAGGCGGTAAACAGATCCCATGTGGCCATGTGTACCATCAATCTTGCTTATCGTCTTGGCTCTCTATCCGCGACTCTTGCCCTCTCTGCCGCTGTCATATCGCCCCCGGTGACAAAACGGAGACGTCCAAAACCGTACAAGTTTAG

Coding sequence (CDS)

ATGGCTACATCAGCTAATTATGCAGCAAGTTACATCATGGACATTGAATCAATGTTCGATCTCGACACGGTCCTCACCGGAGCCGATGACTTCTATTACTTCCACACCGTTGTAGCGCCACCACCCGTGATGGTTGCTGAATTACCGACAGTGGCTGCAGCGGACGATGTATGTGCGGTTTGTATGGAGGATTTTCTGCCGGATGAAGGCGGTAAACAGATCCCATGTGGCCATGTGTACCATCAATCTTGCTTATCGTCTTGGCTCTCTATCCGCGACTCTTGCCCTCTCTGCCGCTGTCATATCGCCCCCGGTGACAAAACGGAGACGTCCAAAACCGTACAAGTTTAG

Homology

[Close]

BLAST of CSPI02G00870 vs. Swiss-Prot
Match: RN115_HUMAN (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-11
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 1


Query: 40  PPPV---MVAELPTVAAADDV------CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLS 99
           PPP     +  LPTV    +       C VC ED+  +E  +Q+PC H +H SC+  WL 
Sbjct: 201 PPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLE 260

Query: 100 IRDSCPLCRCHIAPGDKTETSKTVQ 116
           + D+CP+CR  +   D T  S++ +
Sbjct: 261 LHDTCPVCRKSLNGEDSTRQSQSTE 285

[Close]

BLAST of CSPI02G00870 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.1e-11
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 58  CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQ 116
           CAVCM+DF      KQ+PC H+YH+ CL  WL + +SCP+CR H  P D  +  + V+
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCR-HELPTDDPDYERRVR 280

[Close]

BLAST of CSPI02G00870 vs. Swiss-Prot
Match: RN115_MOUSE (E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-10
Identity = 29/83 (34.94%), Postives = 44/83 (53.01%), Query Frame = 1


Query: 40  PPPV---MVAELPTVAAADDV------CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLS 99
           PPP     +  LPTV    +       C VC ED+  +E  +Q+PC H +H SC+  WL 
Sbjct: 202 PPPADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLE 261

Query: 100 IRDSCPLCRCHIAPGDKTETSKT 114
           + D+CP+CR  +   D T  +++
Sbjct: 262 LHDTCPVCRKSLNGEDSTRQTQS 284

[Close]

BLAST of CSPI02G00870 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-10
Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 1


Query: 48  LPTVAAADDV-------CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRC 107
           LPTV    D+       CAVCM++F      KQ+PC HV+HQ CL  WL + +SCP+CR 
Sbjct: 199 LPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRF 258

[Close]

BLAST of CSPI02G00870 vs. Swiss-Prot
Match: ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.5e-10
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 1


Query: 36  TVVAPPPVMVAELPTVAAADDVCAVCMEDFLPDEGGKQIP-CGHVYHQSCLSSWLSIRDS 95
           TV+   P+ V  + T  +  + C+VC+ +F  D+ G+ +P CGHV+H  C+ +W   R S
Sbjct: 91  TVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSS 150

Query: 96  CPLCRCHIAP 105
           CPLCR  + P
Sbjct: 151 CPLCRAPVQP 160

[Close]

BLAST of CSPI02G00870 vs. TrEMBL
Match: A0A0A0LEZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000920 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV 60
           MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV
Sbjct: 1   MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV 60

Query: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 117
           CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV
Sbjct: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 116

[Close]

BLAST of CSPI02G00870 vs. TrEMBL
Match: A0A0A0LKR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-24
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 15  IESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCMEDFLPDEGGKQI 74
           IE +FDLDTVL+GADD       + P    VA+ PTV A  DVCAVC++DF PDE GKQI
Sbjct: 20  IEFLFDLDTVLSGADDLGCCQ--ITPSDSPVADFPTVVA--DVCAVCLDDFHPDEAGKQI 79

Query: 75  PCGHVYHQSCLSSWLSIRDSCPLCRCHIA--PGDKT 109
           PCGHVYH+SC+SSWL++ D CPLCRC +A  P D T
Sbjct: 80  PCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDST 111

[Close]

BLAST of CSPI02G00870 vs. TrEMBL
Match: D7TBH2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03190 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.1e-18
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1


Query: 15  IESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCMEDFLPDEGGKQI 74
           I+  FDLD  +T  DD     + ++    MV+ +PTV A D  C VC E F   EGGKQ+
Sbjct: 82  IDLCFDLDLAITAVDDT----SEISKSTSMVSTMPTVTAVD-ACTVCREGFQSGEGGKQL 141

Query: 75  PCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGD 107
           PCGH YH  C++SWLS+R+SCPLCRC + PG+
Sbjct: 142 PCGHFYHAGCIASWLSLRNSCPLCRCSV-PGE 167

[Close]

BLAST of CSPI02G00870 vs. TrEMBL
Match: A0A067KCF7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07378 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.8e-16
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 1


Query: 1   MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV 60
           +++ +N A S  + I+  FD+D  LT   +F +    V+    ++A++PTV+   D C++
Sbjct: 4   VSSDSNTAFSTCL-IDVSFDMDEALTLPPNFGH---QVSVSESLIADMPTVSTDHDTCSI 63

Query: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIA 104
           CME F     GK++PCGHVYH +C+SSWLS  +SCPLCRC+I+
Sbjct: 64  CMESFESGRAGKRVPCGHVYHAACISSWLSNCNSCPLCRCNIS 102

[Close]

BLAST of CSPI02G00870 vs. TrEMBL
Match: A0A067KPM6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07310 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.0e-16
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1


Query: 13  MDIESMFDLDTVLTGADDFYYFHTVVAPPPV--MVAELPTVAAADDVCAVCMEDFLPDEG 72
           M +   FDL    +G D+      + A   +  ++A +PTV+  D+VC VCME F    G
Sbjct: 19  MAVNISFDLHETPSGTDNLSRRSRITAASSINDLIAGMPTVSTNDEVCIVCMEGFRSSVG 78

Query: 73  GKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPG 106
           GK+IPCGH+YH  C+SSWL   +SCPLCR +I+ G
Sbjct: 79  GKRIPCGHIYHSDCISSWLCRSNSCPLCRINISDG 113

[Close]

BLAST of CSPI02G00870 vs. TAIR10
Match: AT3G02340.1 (AT3G02340.1 RING/U-box superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 34/103 (33.01%), Postives = 56/103 (54.37%), Query Frame = 1


Query: 4   SANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCME 63
           S +Y A  I+    MFD +T + G        +V+   PV+   +  +   ++VCAVC +
Sbjct: 285 SGHYDADAILG--QMFDDETGIRGNPPAA--KSVIQDLPVVELAVEELDKGNNVCAVCKD 344

Query: 64  DFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGD 107
           + L +E  +++PC H YH  C+  WL IR++CP+CR  +   D
Sbjct: 345 EMLVEEKVRRLPCSHFYHGECIIPWLGIRNTCPVCRYELPTDD 383

[Close]

BLAST of CSPI02G00870 vs. TAIR10
Match: AT1G68180.1 (AT1G68180.1 RING/U-box superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1


Query: 38  VAPPPVM---VAELPTVAAADD------VCAVCMEDFLPDEGGKQIPCGHVYHQSCLSSW 97
           + PPP     +  + TV   D+      VCA+C E+F   E GK++ C H+YH SC+ SW
Sbjct: 109 IGPPPASQSAIEAVRTVIITDEDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSW 168

Query: 98  LSIRDSCPLCRCHIAPG 106
           L+I ++CP+CR  +  G
Sbjct: 169 LNIHNTCPICRFEVNLG 185

[Close]

BLAST of CSPI02G00870 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 1


Query: 48  LPTVAAADDV-------CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRC 107
           LPTV    D+       CAVCM++F      KQ+PC HV+HQ CL  WL + +SCP+CR 
Sbjct: 199 LPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRF 258

[Close]

BLAST of CSPI02G00870 vs. TAIR10
Match: AT4G26400.2 (AT4G26400.2 RING/U-box superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 25/69 (36.23%), Postives = 43/69 (62.32%), Query Frame = 1


Query: 44  MVAELPTVAAADDV-CAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHI 103
           +V  LPTV  ++ + C++C++DF      K++PC H +H  C+  WL +  SCP+CR  +
Sbjct: 226 VVDNLPTVKISESLQCSICLDDFDKGSEAKEMPCKHKFHIRCIVPWLELHSSCPVCRYEL 285

Query: 104 APGDKTETS 112
            P D+T+ +
Sbjct: 286 PPDDETKVN 294

[Close]

BLAST of CSPI02G00870 vs. TAIR10
Match: AT3G60080.1 (AT3G60080.1 RING/U-box superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1


Query: 57  VCAVCMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCR 100
           +CAVC EDF+  E  +++PC H+YH  C+  WLS  +SCPLCR
Sbjct: 168 LCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCR 210

[Close]

BLAST of CSPI02G00870 vs. NCBI nr
Match: gi|778673949|ref|XP_011650093.1| (PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 1.7e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV 60
           MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV
Sbjct: 1   MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV 60

Query: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 117
           CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV
Sbjct: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 116

[Close]

BLAST of CSPI02G00870 vs. NCBI nr
Match: gi|449466270|ref|XP_004150849.1| (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-24
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 15  IESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCMEDFLPDEGGKQI 74
           IE +FDLDTVL+GADD       + P    VA+ PTV A  DVCAVC++DF PDE GKQI
Sbjct: 20  IEFLFDLDTVLSGADDLGCCQ--ITPSDSPVADFPTVVA--DVCAVCLDDFHPDEAGKQI 79

Query: 75  PCGHVYHQSCLSSWLSIRDSCPLCRCHIA--PGDKT 109
           PCGHVYH+SC+SSWL++ D CPLCRC +A  P D T
Sbjct: 80  PCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDST 111

[Close]

BLAST of CSPI02G00870 vs. NCBI nr
Match: gi|731406754|ref|XP_003633119.2| (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Vitis vinifera])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1


Query: 15  IESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCMEDFLPDEGGKQI 74
           I+  FDLD  +T  DD     + ++    MV+ +PTV A D  C VC E F   EGGKQ+
Sbjct: 82  IDLCFDLDLAITAVDDT----SEISKSTSMVSTMPTVTAVD-ACTVCREGFQSGEGGKQL 141

Query: 75  PCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGD 107
           PCGH YH  C++SWLS+R+SCPLCRC + PG+
Sbjct: 142 PCGHFYHAGCIASWLSLRNSCPLCRCSV-PGE 167

[Close]

BLAST of CSPI02G00870 vs. NCBI nr
Match: gi|643724606|gb|KDP33807.1| (hypothetical protein JCGZ_07378 [Jatropha curcas])

HSP 1 Score: 92.4 bits (228), Expect = 5.5e-16
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 1


Query: 1   MATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAV 60
           +++ +N A S  + I+  FD+D  LT   +F +    V+    ++A++PTV+   D C++
Sbjct: 4   VSSDSNTAFSTCL-IDVSFDMDEALTLPPNFGH---QVSVSESLIADMPTVSTDHDTCSI 63

Query: 61  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIA 104
           CME F     GK++PCGHVYH +C+SSWLS  +SCPLCRC+I+
Sbjct: 64  CMESFESGRAGKRVPCGHVYHAACISSWLSNCNSCPLCRCNIS 102

[Close]

BLAST of CSPI02G00870 vs. NCBI nr
Match: gi|643724538|gb|KDP33739.1| (hypothetical protein JCGZ_07310 [Jatropha curcas])

HSP 1 Score: 92.0 bits (227), Expect = 7.2e-16
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1


Query: 13  MDIESMFDLDTVLTGADDFYYFHTVVAPPPV--MVAELPTVAAADDVCAVCMEDFLPDEG 72
           M +   FDL    +G D+      + A   +  ++A +PTV+  D+VC VCME F    G
Sbjct: 19  MAVNISFDLHETPSGTDNLSRRSRITAASSINDLIAGMPTVSTNDEVCIVCMEGFRSSVG 78

Query: 73  GKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPG 106
           GK+IPCGH+YH  C+SSWL   +SCPLCR +I+ G
Sbjct: 79  GKRIPCGHIYHSDCISSWLCRSNSCPLCRINISDG 113

The following BLAST results are available for this feature:

BLAST of CSPI02G00870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RN115_HUMAN	3.1e-11	35.29	E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2	[more]
RING1_GOSHI	9.1e-11	46.55	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1	[more]
RN115_MOUSE	1.6e-10	34.94	E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1 SV=1	[more]
RNG1L_ARATH	2.0e-10	43.94	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1...	[more]
ATL5_ARATH	4.5e-10	38.57	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1	[more]

BLAST of CSPI02G00870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEZ1_CUCSA	1.2e-62	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000920 PE=4 SV=1	[more]
A0A0A0LKR7_CUCSA	1.0e-24	61.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000930 PE=4 SV=1	[more]
D7TBH2_VITVI	9.1e-18	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03190 PE=4 SV=...	[more]
A0A067KCF7_JATCU	3.8e-16	42.72	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07378 PE=4 SV=1	[more]
A0A067KPM6_JATCU	5.0e-16	44.21	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07310 PE=4 SV=1	[more]

BLAST of CSPI02G00870 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02340.1	1.1e-11	33.01	RING/U-box superfamily protein	[more]
AT1G68180.1	1.1e-11	38.96	RING/U-box superfamily protein	[more]
AT3G19950.1	1.1e-11	43.94	RING/U-box superfamily protein	[more]
AT4G26400.2	1.1e-11	36.23	RING/U-box superfamily protein	[more]
AT3G60080.1	1.9e-11	53.49	RING/U-box superfamily protein	[more]

BLAST of CSPI02G00870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673949\|ref\|XP_011650093.1\|	1.7e-62	100.00	PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus]	[more]
gi\|449466270\|ref\|XP_004150849.1\|	1.4e-24	61.46	PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus]	[more]
gi\|731406754\|ref\|XP_003633119.2\|	1.3e-17	50.00	PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Vitis vinifera]	[more]
gi\|643724606\|gb\|KDP33807.1\|	5.5e-16	42.72	hypothetical protein JCGZ_07378 [Jatropha curcas]	[more]
gi\|643724538\|gb\|KDP33739.1\|	7.2e-16	44.21	hypothetical protein JCGZ_07310 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR011016	Znf_RING-CH
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0044267	cellular protein metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G00870.1	CSPI02G00870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 57..99 score: 5.1
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 58..98 score: 5.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 58..99 score: 12
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 57..99 score:
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 54..101 score: 5.0
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 44..106 score: 6.9
None	No IPR available	PANTHER	PTHR22763:SF87	SUBFAMILY NOT NAMED	coord: 44..106 score: 6.9
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 48..104 score: 2.83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G00870	Cla016793	Watermelon (97103) v1	cpiwmB165
CSPI02G00870	Csa2G000920	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G00870	MELO3C004585	Melon (DHL92) v3.5.1	cpimeB140
CSPI02G00870	ClCG11G002160	Watermelon (Charleston Gray)	cpiwcgB102
CSPI02G00870	Lsi11G002300	Bottle gourd (USVL1VR-Ls)	cpilsiB096
CSPI02G00870	MELO3C004585.2	Melon (DHL92) v3.6.1	cpimedB133
CSPI02G00870	CsaV3_2G001940	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G00870	Cla97C11G208560	Watermelon (97103) v2	cpiwmbB105
CSPI02G00870	BhiUN55G9	Wax gourd	cpiwgoB170
CSPI02G00870	Cucsa.116610	Cucumber (Gy14) v1	cgycpiB152
CSPI02G00870	CmaCh05G013660	Cucurbita maxima (Rimu)	cmacpiB800
CSPI02G00870	CmaCh12G012700	Cucurbita maxima (Rimu)	cmacpiB174
CSPI02G00870	CmoCh12G013030	Cucurbita moschata (Rifu)	cmocpiB159
CSPI02G00870	Cp4.1LG07g10360	Cucurbita pepo (Zucchini)	cpecpiB822
CSPI02G00870	Cp4.1LG11g11400	Cucurbita pepo (Zucchini)	cpecpiB100
CSPI02G00870	CsGy2G000840	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G00870	Carg18595	Silver-seed gourd	carcpiB0934
CSPI02G00870	Carg10839	Silver-seed gourd	carcpiB0603

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G00870	Watermelon (97103) v2	cpiwmbB132
CSPI02G00870	Watermelon (97103) v2	cpiwmbB159
CSPI02G00870	Wax gourd	cpiwgoB144
CSPI02G00870	Wax gourd	cpiwgoB211
CSPI02G00870	Wild cucumber (PI 183967)	cpicpiB010
CSPI02G00870	Cucumber (Gy14) v1	cgycpiB438
CSPI02G00870	Cucurbita maxima (Rimu)	cmacpiB073
CSPI02G00870	Cucurbita maxima (Rimu)	cmacpiB116
CSPI02G00870	Cucurbita moschata (Rifu)	cmocpiB066
CSPI02G00870	Cucurbita moschata (Rifu)	cmocpiB108
CSPI02G00870	Cucurbita moschata (Rifu)	cmocpiB158
CSPI02G00870	Cucurbita moschata (Rifu)	cmocpiB787
CSPI02G00870	Cucumber (Chinese Long) v2	cpicuB061
CSPI02G00870	Melon (DHL92) v3.5.1	cpimeB111
CSPI02G00870	Melon (DHL92) v3.5.1	cpimeB131
CSPI02G00870	Watermelon (Charleston Gray)	cpiwcgB140
CSPI02G00870	Watermelon (Charleston Gray)	cpiwcgB165
CSPI02G00870	Watermelon (97103) v1	cpiwmB119
CSPI02G00870	Watermelon (97103) v1	cpiwmB123
CSPI02G00870	Cucurbita pepo (Zucchini)	cpecpiB370
CSPI02G00870	Cucurbita pepo (Zucchini)	cpecpiB665
CSPI02G00870	Bottle gourd (USVL1VR-Ls)	cpilsiB133
CSPI02G00870	Bottle gourd (USVL1VR-Ls)	cpilsiB138
CSPI02G00870	Melon (DHL92) v3.6.1	cpimedB106
CSPI02G00870	Cucumber (Gy14) v2	cgybcpiB017
CSPI02G00870	Cucumber (Gy14) v2	cgybcpiB104
CSPI02G00870	Silver-seed gourd	carcpiB0044
CSPI02G00870	Silver-seed gourd	carcpiB0107
CSPI02G00870	Silver-seed gourd	carcpiB0224