CmaCh12G012700 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G012700
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRING/U-box superfamily protein
LocationCma_Chr12 : 9903694 .. 9904062 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTGTCTTGCCAGAAGCAACAAGATCAGCTTTTGCAGCGAGCTACATCATGGACCTTGAATCCATGTTCGATCTCGACACGGTCCTCACCGGTGCCGATGACTATTATAACGACCAGATGATCATCACAGAGCCGCCGTCCGTGGTGGTTTCCGATTTGCCAACGGTGGTCACAGACGACGTATGTGCAGTTTGTATGGAGGAATTCCGGGCGGATGAAGGTGGTAAACAGATCCCCTGCGGTCATGTGTACCATCAAAGTTGTATATCCTCATGGCTCTCCGTCGGCGACTGTTGCCCTCTCTGCCGCTGCCACGTCTCCTCCGACAACAAATTGGAAACTACTAAACCCGTTCAGGTTTAG

mRNA sequence

ATGGCTGCTGTCTTGCCAGAAGCAACAAGATCAGCTTTTGCAGCGAGCTACATCATGGACCTTGAATCCATGTTCGATCTCGACACGGTCCTCACCGGTGCCGATGACTATTATAACGACCAGATGATCATCACAGAGCCGCCGTCCGTGGTGGTTTCCGATTTGCCAACGGTGGTCACAGACGACGTATGTGCAGTTTGTATGGAGGAATTCCGGGCGGATGAAGGTGGTAAACAGATCCCCTGCGGTCATGTGTACCATCAAAGTTGTATATCCTCATGGCTCTCCGTCGGCGACTGTTGCCCTCTCTGCCGCTGCCACGTCTCCTCCGACAACAAATTGGAAACTACTAAACCCGTTCAGGTTTAG

Coding sequence (CDS)

ATGGCTGCTGTCTTGCCAGAAGCAACAAGATCAGCTTTTGCAGCGAGCTACATCATGGACCTTGAATCCATGTTCGATCTCGACACGGTCCTCACCGGTGCCGATGACTATTATAACGACCAGATGATCATCACAGAGCCGCCGTCCGTGGTGGTTTCCGATTTGCCAACGGTGGTCACAGACGACGTATGTGCAGTTTGTATGGAGGAATTCCGGGCGGATGAAGGTGGTAAACAGATCCCCTGCGGTCATGTGTACCATCAAAGTTGTATATCCTCATGGCTCTCCGTCGGCGACTGTTGCCCTCTCTGCCGCTGCCACGTCTCCTCCGACAACAAATTGGAAACTACTAAACCCGTTCAGGTTTAG

Protein sequence

MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDNKLETTKPVQV
Homology
[Close]
BLAST of CmaCh12G012700 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-10
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 1 

Query: 39  NDQMIITEPPSV--VVSDLPTV-VTDDV-------CAVCMEEFRADEGGKQIPCGHVYHQ 98
           ND      PP+    +  LPTV VT D+       CAVCM+EF      KQ+PC HV+HQ
Sbjct: 181 NDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQ 240

Query: 99  SCISSWLSVGDCCPLCRCHVSSDN 113
            C+  WL + + CP+CR  + +D+
Sbjct: 241 DCLLPWLELHNSCPVCRFELPTDD 264

[Close]
BLAST of CmaCh12G012700 vs. Swiss-Prot
Match: RN126_MOUSE (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-09
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 1 

Query: 27  LDTVLTGADDYYNDQMIITEPPSV---VVSDLPTV-VTDD------VCAVCMEEFRADEG 86
           LDT++T   + + +    T PP      +  LPTV VT++       C VC E++   E 
Sbjct: 188 LDTIITQLLNQFEN----TGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGES 247

Query: 87  GKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDN 113
            +Q+PC H++H SCI  WL   D CP+CR  ++  N
Sbjct: 248 VRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 279

[Close]
BLAST of CmaCh12G012700 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-08
Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 1 

Query: 64  CAVCMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDN 113
           CAVCM++F      KQ+PC H+YH+ C+  WL + + CP+CR  + +D+
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDD 272

[Close]
BLAST of CmaCh12G012700 vs. Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-08
Identity = 31/94 (32.98%), Postives = 46/94 (48.94%), Query Frame = 1 

Query: 26  DLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVVTDDV-------CAVCMEEFRADEGGK 85
           D+D+      D+  DQ +       VV  LP V+           C VC+ EF   E  +
Sbjct: 36  DIDSGSFDLSDW--DQRLPPPAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVR 95

Query: 86  QIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDN 113
           ++PC H++H  CI  WL+  + CPLCR  + +DN
Sbjct: 96  EMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDN 127

[Close]
BLAST of CmaCh12G012700 vs. Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-08
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 1 

Query: 63  VCAVCMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDN 113
           VCAVC +     E GK++PCGH YH  CI  WL   + CP+CR  + +D+
Sbjct: 256 VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDD 305

[Close]
BLAST of CmaCh12G012700 vs. TrEMBL
Match: A0A0A0LEZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000920 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.9e-40
Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = 1 

Query: 8   ATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTV-VTDDVCAV 67
           AT + +AASYIMD+ESMFDLDTVLTGADD+Y    ++  PP V+V++LPTV   DDVCAV
Sbjct: 2   ATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVA-PPPVMVAELPTVAAADDVCAV 61

Query: 68  CMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDNKLETTKPVQV 123
           CME+F  DEGGKQIPCGHVYHQSC+SSWLS+ D CPLCRCH++  +K ET+K VQV
Sbjct: 62  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 116

[Close]
BLAST of CmaCh12G012700 vs. TrEMBL
Match: A0A0A0LKR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.0e-25
Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = 1 

Query: 21  LESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVVTDDVCAVCMEEFRADEGGKQI 80
           +E +FDLDTVL+GADD    Q+  ++ P   V+D PTVV D VCAVC+++F  DE GKQI
Sbjct: 20  IEFLFDLDTVLSGADDLGCCQITPSDSP---VADFPTVVAD-VCAVCLDDFHPDEAGKQI 79

Query: 81  PCGHVYHQSCISSWLSVGDCCPLCRCHVS 110
           PCGHVYH+SCISSWL+V DCCPLCRC V+
Sbjct: 80  PCGHVYHESCISSWLTVADCCPLCRCLVA 104

[Close]
BLAST of CmaCh12G012700 vs. TrEMBL
Match: D7TBH2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03190 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-16
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 1 

Query: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVVT 60
           MAA  PE   S+   +  +DL   FDLD  +T  DD       I++  S+V S +PTV  
Sbjct: 67  MAAKSPE---SSLMVNRHIDL--CFDLDLAITAVDDTSE----ISKSTSMV-STMPTVTA 126

Query: 61  DDVCAVCMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDN 113
            D C VC E F++ EGGKQ+PCGH YH  CI+SWLS+ + CPLCRC V  ++
Sbjct: 127 VDACTVCREGFQSGEGGKQLPCGHFYHAGCIASWLSLRNSCPLCRCSVPGED 168

[Close]
BLAST of CmaCh12G012700 vs. TrEMBL
Match: A0A067KCF7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07378 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.8e-16
Identity = 46/108 (42.59%), Postives = 70/108 (64.81%), Query Frame = 1 

Query: 3   AVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVVTD- 62
           A +   + +AF+   I   +  FD+D  LT   ++   Q+ ++E    +++D+PTV TD 
Sbjct: 2   ATVSSDSNTAFSTCLI---DVSFDMDEALTLPPNF-GHQVSVSES---LIADMPTVSTDH 61

Query: 63  DVCAVCMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVS 110
           D C++CME F +   GK++PCGHVYH +CISSWLS  + CPLCRC++S
Sbjct: 62  DTCSICMESFESGRAGKRVPCGHVYHAACISSWLSNCNSCPLCRCNIS 102

[Close]
BLAST of CmaCh12G012700 vs. TrEMBL
Match: B9NAR2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s17790g PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.9e-16
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 1 

Query: 21  LESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVVT--DDVCAVCMEEFRADEGGK 80
           +++ FDLD  LT      N    IT   S +V+D+PT +T  D VCAVCME F++  GGK
Sbjct: 11  IDTSFDLDEALTLPQ---NLSQQITYSNSTIVADMPTALTTGDAVCAVCMEGFQSGIGGK 70

Query: 81  QIPCGHVYHQSCISSWLSVGDCCPLCRCHVS 110
           ++PCGHVYH++CIS+ LS    CPLCRC +S
Sbjct: 71  KVPCGHVYHEACISALLSHRHSCPLCRCDIS 98

[Close]
BLAST of CmaCh12G012700 vs. TAIR10
Match: AT1G68180.1 (AT1G68180.1 RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-12
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 1 

Query: 25  FDLDTVLTGADDYYNDQMI---ITEPPS----------VVVSDLPTVVTDDVCAVCMEEF 84
           F+ D ++   D+ + D M    I  PP+          V+++D   +V + VCA+C EEF
Sbjct: 87  FNHDDLVYNTDEEFADVMPSVQIGPPPASQSAIEAVRTVIITD-EDLVKEKVCAICKEEF 146

Query: 85  RADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVS 110
              E GK++ C H+YH SCI SWL++ + CP+CR  V+
Sbjct: 147 EVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICRFEVN 183

[Close]
BLAST of CmaCh12G012700 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 4.5e-11
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 1 

Query: 39  NDQMIITEPPSV--VVSDLPTV-VTDDV-------CAVCMEEFRADEGGKQIPCGHVYHQ 98
           ND      PP+    +  LPTV VT D+       CAVCM+EF      KQ+PC HV+HQ
Sbjct: 181 NDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQ 240

Query: 99  SCISSWLSVGDCCPLCRCHVSSDN 113
            C+  WL + + CP+CR  + +D+
Sbjct: 241 DCLLPWLELHNSCPVCRFELPTDD 264

[Close]
BLAST of CmaCh12G012700 vs. TAIR10
Match: AT3G30460.1 (AT3G30460.1 RING/U-box superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 7.7e-11
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1 

Query: 63  VCAVCMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDN 113
           VCA+C EE  A+E   ++PC H YH+ CIS+WLS  + CPLCR +V   N
Sbjct: 96  VCAICREELAANERLSELPCRHYYHKECISNWLSNRNTCPLCRHNVELPN 145

[Close]
BLAST of CmaCh12G012700 vs. TAIR10
Match: AT3G60080.1 (AT3G60080.1 RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 1 

Query: 48  PSVVVSDLPTVVTDD-------VCAVCMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDC 107
           P++ +S      TDD       +CAVC E+F   E  +++PC H+YH  CI  WLS  + 
Sbjct: 146 PTIQISSSLLCSTDDSDPDSVLLCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNS 205

Query: 108 CPLCRCHVSSDNKL 115
           CPLCR  + +  K+
Sbjct: 206 CPLCRFELPTTAKV 219

[Close]
BLAST of CmaCh12G012700 vs. TAIR10
Match: AT3G02340.1 (AT3G02340.1 RING/U-box superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 33/98 (33.67%), Postives = 52/98 (53.06%), Query Frame = 1 

Query: 25  FDLDTVLTGADDYYNDQMIITEPPSV--VVSDLPTVVT--------DDVCAVCMEEFRAD 84
           +D D +L    D  ++  I   PP+   V+ DLP V          ++VCAVC +E   +
Sbjct: 288 YDADAILGQMFD--DETGIRGNPPAAKSVIQDLPVVELAVEELDKGNNVCAVCKDEMLVE 347

Query: 85  EGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDN 113
           E  +++PC H YH  CI  WL + + CP+CR  + +D+
Sbjct: 348 EKVRRLPCSHFYHGECIIPWLGIRNTCPVCRYELPTDD 383

[Close]
BLAST of CmaCh12G012700 vs. NCBI nr
Match: gi|778673949|ref|XP_011650093.1| (PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-39
Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = 1 

Query: 8   ATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTV-VTDDVCAV 67
           AT + +AASYIMD+ESMFDLDTVLTGADD+Y    ++  PP V+V++LPTV   DDVCAV
Sbjct: 2   ATSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVA-PPPVMVAELPTVAAADDVCAV 61

Query: 68  CMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDNKLETTKPVQV 123
           CME+F  DEGGKQIPCGHVYHQSC+SSWLS+ D CPLCRCH++  +K ET+K VQV
Sbjct: 62  CMEDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 116

[Close]
BLAST of CmaCh12G012700 vs. NCBI nr
Match: gi|449466270|ref|XP_004150849.1| (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-24
Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = 1 

Query: 21  LESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVVTDDVCAVCMEEFRADEGGKQI 80
           +E +FDLDTVL+GADD    Q+  ++ P   V+D PTVV D VCAVC+++F  DE GKQI
Sbjct: 20  IEFLFDLDTVLSGADDLGCCQITPSDSP---VADFPTVVAD-VCAVCLDDFHPDEAGKQI 79

Query: 81  PCGHVYHQSCISSWLSVGDCCPLCRCHVS 110
           PCGHVYH+SCISSWL+V DCCPLCRC V+
Sbjct: 80  PCGHVYHESCISSWLTVADCCPLCRCLVA 104

[Close]
BLAST of CmaCh12G012700 vs. NCBI nr
Match: gi|731406754|ref|XP_003633119.2| (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Vitis vinifera])

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-16
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 1 

Query: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVVT 60
           MAA  PE   S+   +  +DL   FDLD  +T  DD       I++  S+V S +PTV  
Sbjct: 67  MAAKSPE---SSLMVNRHIDL--CFDLDLAITAVDDTSE----ISKSTSMV-STMPTVTA 126

Query: 61  DDVCAVCMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDN 113
            D C VC E F++ EGGKQ+PCGH YH  CI+SWLS+ + CPLCRC V  ++
Sbjct: 127 VDACTVCREGFQSGEGGKQLPCGHFYHAGCIASWLSLRNSCPLCRCSVPGED 168

[Close]
BLAST of CmaCh12G012700 vs. NCBI nr
Match: gi|643724606|gb|KDP33807.1| (hypothetical protein JCGZ_07378 [Jatropha curcas])

HSP 1 Score: 91.7 bits (226), Expect = 9.8e-16
Identity = 46/108 (42.59%), Postives = 70/108 (64.81%), Query Frame = 1 

Query: 3   AVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVVTD- 62
           A +   + +AF+   I   +  FD+D  LT   ++   Q+ ++E    +++D+PTV TD 
Sbjct: 2   ATVSSDSNTAFSTCLI---DVSFDMDEALTLPPNF-GHQVSVSES---LIADMPTVSTDH 61

Query: 63  DVCAVCMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVS 110
           D C++CME F +   GK++PCGHVYH +CISSWLS  + CPLCRC++S
Sbjct: 62  DTCSICMESFESGRAGKRVPCGHVYHAACISSWLSNCNSCPLCRCNIS 102

[Close]
BLAST of CmaCh12G012700 vs. NCBI nr
Match: gi|566176809|ref|XP_006381766.1| (hypothetical protein POPTR_0006s17790g [Populus trichocarpa])

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 1 

Query: 21  LESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVVT--DDVCAVCMEEFRADEGGK 80
           +++ FDLD  LT      N    IT   S +V+D+PT +T  D VCAVCME F++  GGK
Sbjct: 11  IDTSFDLDEALTLPQ---NLSQQITYSNSTIVADMPTALTTGDAVCAVCMEGFQSGIGGK 70

Query: 81  QIPCGHVYHQSCISSWLSVGDCCPLCRCHVS 110
           ++PCGHVYH++CIS+ LS    CPLCRC +S
Sbjct: 71  KVPCGHVYHEACISALLSHRHSCPLCRCDIS 98

The following BLAST results are available for this feature:
BLAST of CmaCh12G012700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNG1L_ARATH8.0e-1040.48E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RN126_MOUSE6.8e-0935.42E3 ubiquitin-protein ligase RNF126 OS=Mus musculus GN=Rnf126 PE=1 SV=1[more]
RING1_GOSHI1.2e-0842.86E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RN181_DANRE1.5e-0832.98E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2[more]
CIP8_ARATH1.5e-0846.00E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1[more]
BLAST of CmaCh12G012700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEZ1_CUCSA8.9e-4068.97Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000920 PE=4 SV=1[more]
A0A0A0LKR7_CUCSA8.0e-2564.04Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000930 PE=4 SV=1[more]
D7TBH2_VITVI1.8e-1646.43Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03190 PE=4 SV=... [more]
A0A067KCF7_JATCU6.8e-1642.59Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07378 PE=4 SV=1[more]
B9NAR2_POPTR8.9e-1650.55Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s17790g PE=4 SV=1[more]
BLAST of CmaCh12G012700 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68180.11.8e-1236.73 RING/U-box superfamily protein[more]
AT3G19950.14.5e-1140.48 RING/U-box superfamily protein[more]
AT3G30460.17.7e-1152.00 RING/U-box superfamily protein[more]
AT3G60080.11.3e-1037.84 RING/U-box superfamily protein[more]
AT3G02340.11.7e-1033.67 RING/U-box superfamily protein[more]
BLAST of CmaCh12G012700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778673949|ref|XP_011650093.1|1.3e-3968.97PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus][more]
gi|449466270|ref|XP_004150849.1|1.2e-2464.04PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus][more]
gi|731406754|ref|XP_003633119.2|2.6e-1646.43PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Vitis vinifera][more]
gi|643724606|gb|KDP33807.1|9.8e-1642.59hypothetical protein JCGZ_07378 [Jatropha curcas][more]
gi|566176809|ref|XP_006381766.1|1.3e-1550.55hypothetical protein POPTR_0006s17790g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0044267 cellular protein metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G012700.1CmaCh12G012700.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 63..105
score: 1.0
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 64..104
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 64..105
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 61..115
score: 3.7
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 17..108
score: 1.5
NoneNo IPR availablePANTHERPTHR22763:SF87SUBFAMILY NOT NAMEDcoord: 17..108
score: 1.5
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 58..111
score: 3.98

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G012700Cucsa.116610Cucumber (Gy14) v1cgycmaB0285
CmaCh12G012700Cla016793Watermelon (97103) v1cmawmB172
CmaCh12G012700Csa2G000920Cucumber (Chinese Long) v2cmacuB173
CmaCh12G012700MELO3C004585Melon (DHL92) v3.5.1cmameB172
CmaCh12G012700ClCG11G002160Watermelon (Charleston Gray)cmawcgB147
CmaCh12G012700CSPI02G00870Wild cucumber (PI 183967)cmacpiB174
CmaCh12G012700CmoCh12G013030Cucurbita moschata (Rifu)cmacmoB177
CmaCh12G012700Lsi11G002300Bottle gourd (USVL1VR-Ls)cmalsiB159
CmaCh12G012700Cp4.1LG11g11400Cucurbita pepo (Zucchini)cmacpeB171
CmaCh12G012700Cp4.1LG07g10360Cucurbita pepo (Zucchini)cmacpeB204
CmaCh12G012700MELO3C004585.2Melon (DHL92) v3.6.1cmamedB187
CmaCh12G012700CsaV3_2G001940Cucumber (Chinese Long) v3cmacucB0202
CmaCh12G012700Cla97C11G208560Watermelon (97103) v2cmawmbB171
CmaCh12G012700CsGy2G000840Cucumber (Gy14) v2cgybcmaB178
CmaCh12G012700Carg10839Silver-seed gourdcarcmaB0797
CmaCh12G012700Carg18595Silver-seed gourdcarcmaB1236
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh12G012700CmaCh05G013660Cucurbita maxima (Rimu)cmacmaB190
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G012700Cucurbita pepo (Zucchini)cmacpeB184
CmaCh12G012700Cucurbita pepo (Zucchini)cmacpeB196
CmaCh12G012700Bottle gourd (USVL1VR-Ls)cmalsiB179
CmaCh12G012700Cucumber (Gy14) v2cgybcmaB055
CmaCh12G012700Melon (DHL92) v3.6.1cmamedB165
CmaCh12G012700Silver-seed gourdcarcmaB0048
CmaCh12G012700Silver-seed gourdcarcmaB0121
CmaCh12G012700Watermelon (97103) v2cmawmbB179
CmaCh12G012700Watermelon (97103) v2cmawmbB192
CmaCh12G012700Wax gourdcmawgoB0234
CmaCh12G012700Cucurbita maxima (Rimu)cmacmaB086
CmaCh12G012700Cucurbita maxima (Rimu)cmacmaB122
CmaCh12G012700Cucumber (Gy14) v1cgycmaB0813
CmaCh12G012700Cucurbita moschata (Rifu)cmacmoB169
CmaCh12G012700Cucurbita moschata (Rifu)cmacmoB171
CmaCh12G012700Cucurbita moschata (Rifu)cmacmoB186
CmaCh12G012700Cucurbita moschata (Rifu)cmacmoB190
CmaCh12G012700Wild cucumber (PI 183967)cmacpiB158
CmaCh12G012700Cucumber (Chinese Long) v2cmacuB160
CmaCh12G012700Melon (DHL92) v3.5.1cmameB152
CmaCh12G012700Watermelon (Charleston Gray)cmawcgB158
CmaCh12G012700Watermelon (97103) v1cmawmB157