CsGy1G017730 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G017730
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	cytochrome c oxidase assembly factor 6
Location	Chr1 : 15887662 .. 15891376 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACGAGACGACGAAAAACCCCAACCGATTATGAAAGAGACCAAGAAACCATAGCATCTCCGTCTTCGCAGGAACTATGGCTTTCGAAGCTGACTCATCTGGAGGCTCCGATGAAGTTCATACCGACGTTCTATCGGAATCAAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTATGGAGAAGGAATCTGATAAAAAACCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCTGATTATGCCAAACTTTGCAGAGCTTCTTGGGTAACTGTCGTTCCTCGATCACTGGAGATTACAATAACATATTGGGTCTATTAGGTTTTGATGGTGTTTATGATTTTGTAGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACAAAGATTTGAGGAGAGGTCCGTTGATACTTCCTCAGCCTTACACTTTTAAGCCCACTAATTAAACTAAACACAATCCCTCCGGATCAACATTGGGCGGTCAGAGTCTCATGTTTTTGCTTCTTCTTCTTTTACTATGTATAGAAATGACTGTGGAAATAGATTTAGTAATAATGTCCATCTTCTTGCCAGACTACAAAACCTTAATACCCTTTTTGGGCATGTAATTTTAAGGTATGATGTAGAATTAAATTTACCTTCACTTAAGCTTTTGGGTGAAGGCAAATTTAATAGAATATCTAACACTCCCCTAATAGAACACTTTTACCCACAATCTTAAGTTTGTGTGACTGTTCTTCATATTTCAAATCCACAAGTGAGGGGAGTGTTAGATGATATATAATTAAATTTACCTTTCACCCATTAGCTTTAGCTTTTAGCTCAATCAGTGATTTAAGAGGTAGTTCTAACTTCTTGCATGACCGTGATGTAAAAACTAAAGATACAAGACCCTAACACTTGTAATTTCGTTATCTAATAAAAAATCACTTCGTTATTTGGACGCTTTATTAGTTTGTAGAAGTAATATTTTGAATTCTTGGCTGCATAACTTCTTTGAATGTGCTTGTTTGGCTCACGATATGAGAGTTTCTTCATTTGGCTGTCTAGTAATGAACTCTCAATCACAATTTGAATAGGAAGAAATGTAAAGTGCATGGGGCATATTGGCTAGTTGCATTAATTTTAGCCTTTAGGAACAGATATTCAACTCAAATATATAAGACTTTAAGGAAAATGTTTTTTCTCTGATCTCTTTGTCAGTGGAAGTTTAAATACTATGGATTGAATTCAAAGAAGGAATCCAAACTTGGCTTTCTCCAAACATCTGTCTTTGTTGTTGCAAGAGTAAAGATTTTAGCAATCACCAGTTCCTCCATGGTGTGACTTACATTATCAACAGTTTTAATTTGTTTGGTGTCCTTCAAAGAAATTGGGAAGATGTTCTTTTTGAATGGTTGTCTAGTTGGTGGATCAAAGTGAAGGCTAGAATCTTGTGGAGTAGTGCTTGTTTACCTTTCCTCTCAAGCTATATGGAAGGAAAGAAATTGAAGATTGTTCCCAGATAAGGTCTCGACTTCCAATGTTTTTATCGAAGATGCACAATTCACTGTCTCTTGGAGTGCTCTACGCAGTTTTTTTGTAAAACACAACATGCTCTCAAATTTTAGATGGAGATCATTCCTTTTTTATCCTTCTATTTTAGGCTTAGGATCTCTTTTCCCTAAGGCCTTTTGTATGTTGTTCACTTTATTTTGTTTATAAGGTTTCTCCGTTTCTTATCAAGAGAAAAAAAAATCTCAACTAAGTGATATCTCATTGACTTGGAAGCTCAAGTGTGGTTCATCCATCTTCATGGACACGTTAGCTAGTTTTGCTTGTAGATGATTATGCTTAGCATTTGATTGAGGCTCTACAAAACTTTTCTGCCATACATCAGTTCTGCAAAATGTTAGGAACCAAGGTAGTATATGATGCCTTTGTCTCACATTGGTTAGAATGGGATGACCAATATGGTACTTAAGTGGCTTGGTTCTTCCACCTCAACTGGCTTGGTTCACCAACCCATACCGCTCTCCTAGGTACTTAAGTACCTAAAATGGTATCATAGCAAGTTATTGACGTTTCAGAGTGGAACTGACCGAGGGTTCTAATCGGGTGTGGCCAAGTGAAGTGCCATCAGAGTAGCCATTAGGACGCCGACTTTATGGGGATGAGGTATTGTTAGGAACCAAGGTAGTATGAGATGCCTTCGTCCCACATTGGTTAGAATGGGATGACCAATGTGATTCTTAAGTGGCTTGGTTATCTCACCCCAACAACTGGCAGTTGAGGTGTGGTTTTTCGAGGTGCCTAAGTACCTAACACAAAATCTACTAAAAGCTCTCAAATTATGGACATTCTCTTTGTTACTGTTTAAAGTTTGAGGCTCACTGAAGTGCAGTAGGCCGTAGCCTTTAAGAGCATAGAAGGTTTGAACTTTTTTTTGTGAGATGCTATATGTATATGTGGAAGTATTATACAGAAAAATAAACATCTTAGAATTAGATGATTATAATAAAGAAAAAGTTATAGCACATGAAACTTAAAGGTTAGAAAGGTTCAAACTTTCTGTACTTATAGAATGTTTGGGTGAGAATGAAGGAAAAGAATGGTCGGGAAATAGCAGTTAAAGCAAGGTCTAATCTAGTAATAGTAAAAGAGAGACCCTATCTAGATATATATATAAAGAACCCGTAAGACACAGTTTCTTTTGTGTGCCTACCAGGCCCCTGCCTCATGGAGCTTTTTAAAACACGCTAGTTTGTGAATGTGAAAACAAATACGCAAGAGATTGATATACCGATAAACAGGACAAGATTCTGTTGGTATCCTGCATTTGCCTAAAGATTACCATAGCAGAAGATACACTTGAATGGCAAGTGACGTATTTGAGATGGACACTGATCCGTGATCAAAATCACAAACAAAGATGATAGACTAACTCTAAAACATAACAACATATTCAAAATGAAACATAATAAACTAAGGAGGTTCTAACTTTCTAATTCCTATTAGAAAATATTCCAATATTAACAAACATAAAACTGCTGTGAAGTTCTCTTAGATTGGAGTCCTCTTTTACAGGCGAGGTCGAAGTTTTTTTTTGCTGGGTCTTTTCTTTTTTCTTTTCTGTTGTTTTTGTATGCCCTTGCATATTCTTTTCGTACCCCTCCTTAAAAGCGTTCCCAACAAAAAATGAGATTGCAAGTACTGCAAATTTTATTAAAACTGATTGTCATACCAAAAAAATGGGGTTGTAAGTACTGGAAGTGTATTCCGTTTTTCAGTTATCTCGTGAGGAAGGCAGCATCGAACCACGAGGCTCCATTGCACTGACTACTGATTGGATGTCTTGGGACTTGGGAGTAAGACTGCTGATTGAAATAGGTTTTCTGGACGTGGTAAGACCAAGAGCTCTTGTTAAGGAACACCCTTTGATTAACGAGTCTTTTTCTTCTCCTCCTAGAAAATTAGGATATCTTTTAGGGGCTGTTGGTCCACCCGATTTCATAAGTCAATGTTATTTAACTCGACCATACCACTTTAATAGTGGTCACTATTGAAGTTTACATGTTTAGTAAAGAGCTTCATATTTTCCTCTCTCTCCTTTTTTCTAATGTTTCATAACTTCAAACTAAACAGTTCTATAACCCAAATACAAACTTCCTAATCTTTAG

mRNA sequence

GGACGAGACGACGAAAAACCCCAACCGATTATGAAAGAGACCAAGAAACCATAGCATCTCCGTCTTCGCAGGAACTATGGCTTTCGAAGCTGACTCATCTGGAGGCTCCGATGAAGTTCATACCGACGTTCTATCGGAATCAAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTATGGAGAAGGAATCTGATAAAAAACCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCTGATTATGCCAAACTTTGCAGAGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACAAAGATTTGAGGAGAGTTATCTCGTGAGGAAGGCAGCATCGAACCACGAGGCTCCATTGCACTGACTACTGATTGGATGTCTTGGGACTTGGGAGTAAGACTGCTGATTGAAATAGGTTTTCTGGACGTGGTAAGACCAAGAGCTCTTGTTAAGGAACACCCTTTGATTAACGAGTCTTTTTCTTCTCCTCCTAGAAAATTAGGATATCTTTTAGGGGCTGTTGGTCCACCCGATTTCATAAGTCAATGTTATTTAACTCGACCATACCACTTTAATAGTGGTCACTATTGAAGTTTACATGTTTAGTAAAGAGCTTCATATTTTCCTCTCTCTCCTTTTTTCTAATGTTTCATAACTTCAAACTAAACAGTTCTATAACCCAAATACAAACTTCCTAATCTTTAG

Coding sequence (CDS)

ATGGCTTTCGAAGCTGACTCATCTGGAGGCTCCGATGAAGTTCATACCGACGTTCTATCGGAATCAAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTATGGAGAAGGAATCTGATAAAAAACCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCTGATTATGCCAAACTTTGCAGAGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACAAAGATTTGAGGAGAGTTATCTCGTGA

Protein sequence

MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECKALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRVIS

Homology

[Close]

BLAST of CsGy1G017730 vs. NCBI nr
Match: XP_011655954.1 (PREDICTED: cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 8.9e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60
           MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRVIS 103
           ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRVIS
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRVIS 102

[Close]

BLAST of CsGy1G017730 vs. NCBI nr
Match: XP_004146692.1 (PREDICTED: uncharacterized protein LOC101212489 isoform X2 [Cucumis sativus] >XP_011655945.1 PREDICTED: uncharacterized protein LOC101212489 isoform X2 [Cucumis sativus] >KGN65243.1 hypothetical protein Csa_1G269850 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 2.9e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60
           MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 100
           ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 99

[Close]

BLAST of CsGy1G017730 vs. NCBI nr
Match: XP_008443874.1 (PREDICTED: uncharacterized protein LOC103487365 isoform X2 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 4.9e-49
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60
           MA EADSSGGSDEVHTDVLSESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRVIS 103
           ALRADY KLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRVIS
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRVIS 102

[Close]

BLAST of CsGy1G017730 vs. NCBI nr
Match: XP_008443871.1 (PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_008443872.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo])

HSP 1 Score: 198.0 bits (502), Expect = 1.6e-47
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60
           MA EADSSGGSDEVHTDVLSESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 100
           ALRADY KLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 99

[Close]

BLAST of CsGy1G017730 vs. NCBI nr
Match: XP_022134674.1 (uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncharacterized protein LOC111006886 [Momordica charantia])

HSP 1 Score: 183.7 bits (465), Expect = 3.1e-43
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60
           MA EAD+SGG DEVH+DVL+ SRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 100
           ALRA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RR
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRR 99

[Close]

BLAST of CsGy1G017730 vs. TAIR10
Match: AT5G58005.1 (Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 122.1 bits (305), Expect = 2.0e-28
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60
           MA +  +S   ++VH DVL ++R ACY      YAC+EKES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYXXXXXXYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 100
             R  +   CR+SWVKHFDR++C+N RVQRLLDD D R+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERK 99

[Close]

BLAST of CsGy1G017730 vs. TrEMBL
Match: tr|A0A0A0LTX1|A0A0A0LTX1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.9e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60
           MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 100
           ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 99

[Close]

BLAST of CsGy1G017730 vs. TrEMBL
Match: tr|A0A1S3B914|A0A1S3B914_CUCME (uncharacterized protein LOC103487365 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.2e-49
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60
           MA EADSSGGSDEVHTDVLSESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRVIS 103
           ALRADY KLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRVIS
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRVIS 102

[Close]

BLAST of CsGy1G017730 vs. TrEMBL
Match: tr|A0A1S3B9T5|A0A1S3B9T5_CUCME (uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.0e-47
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60
           MA EADSSGGSDEVHTDVLSESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 100
           ALRADY KLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 99

[Close]

BLAST of CsGy1G017730 vs. TrEMBL
Match: tr|A0A2I4H2N2|A0A2I4H2N2_9ROSI (cytochrome c oxidase assembly factor 6 OS=Juglans regia OX=51240 GN=LOC109012980 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.0e-36
Identity = 74/99 (74.75%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60
           MA EA +S  +D VH DVLSE+RQACYKARDAFYAC+EKES+K PTEIASVGL+YP++CK
Sbjct: 1   MALEAYASRNADTVHADVLSEARQACYKARDAFYACLEKESNKTPTEIASVGLLYPSDCK 60

Query: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 100
             RAD+ K CRASWVKHFDR++C+N RVQRLLDDKD RR
Sbjct: 61  GSRADFVKHCRASWVKHFDRQYCRNQRVQRLLDDKDSRR 99

[Close]

BLAST of CsGy1G017730 vs. TrEMBL
Match: tr|I1JGN2|I1JGN2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100780570 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-34
Identity = 70/99 (70.71%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60
           MA EA ++   D++HTDVL+++R +CYKARDAFYAC+EKESDKKPTEIASVGL+YP ECK
Sbjct: 1   MALEAYAAANPDKIHTDVLTKARDSCYKARDAFYACLEKESDKKPTEIASVGLLYPLECK 60

Query: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 100
             R +Y K CR+SWVKHFDR++CQN RVQRLLDDK  RR
Sbjct: 61  ECRNEYVKQCRSSWVKHFDRQYCQNKRVQRLLDDKGSRR 99

The following BLAST results are available for this feature:

BLAST of CsGy1G017730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655954.1	8.9e-51	100.00	PREDICTED: cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis sativus]	[more]
XP_004146692.1	2.9e-49	100.00	PREDICTED: uncharacterized protein LOC101212489 isoform X2 [Cucumis sativus] >XP...	[more]
XP_008443874.1	4.9e-49	97.06	PREDICTED: uncharacterized protein LOC103487365 isoform X2 [Cucumis melo]	[more]
XP_008443871.1	1.6e-47	96.97	PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_022134674.1	3.1e-43	88.89	uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncha...	[more]

BLAST of CsGy1G017730 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58005.1	2.0e-28	56.57	Cytochrome c oxidase, subunit Vib family protein	[more]

BLAST of CsGy1G017730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G017730 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTX1\|A0A0A0LTX1_CUCSA	1.9e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1	[more]
tr\|A0A1S3B914\|A0A1S3B914_CUCME	3.2e-49	97.06	uncharacterized protein LOC103487365 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B9T5\|A0A1S3B9T5_CUCME	1.0e-47	96.97	uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2I4H2N2\|A0A2I4H2N2_9ROSI	7.0e-36	74.75	cytochrome c oxidase assembly factor 6 OS=Juglans regia OX=51240 GN=LOC109012980...	[more]
tr\|I1JGN2\|I1JGN2_SOYBN	1.3e-34	70.71	Uncharacterized protein OS=Glycine max OX=3847 GN=100780570 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005739	mitochondrion

Vocabulary: **INTERPRO**
Term	Definition
IPR036549	Cyt_c_oxidase_su6B_sf
IPR003213	Cyt_c_oxidase_su6B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G017730.1	CsGy1G017730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 21..92 e-value: 6.7E-19 score: 67.8
IPR003213	Cytochrome c oxidase, subunit VIb	PANTHER	PTHR11387	CYTOCHROME C OXIDASE POLYPEPTIDE VIB	coord: 20..97
None	No IPR available	PANTHER	PTHR11387:SF20	CYTOCHROME C OXIDASE ASSEMBLY FACTOR 6 HOMOLOG	coord: 20..97
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	SSF47694	Cytochrome c oxidase subunit h	coord: 22..82

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G017730	Cla018723	Watermelon (97103) v1	cgybwmB079
CsGy1G017730	Csa1G269850	Cucumber (Chinese Long) v2	cgybcuB003
CsGy1G017730	MELO3C010236	Melon (DHL92) v3.5.1	cgybmeB049
CsGy1G017730	ClCG06G012280	Watermelon (Charleston Gray)	cgybwcgB063
CsGy1G017730	CSPI01G17550	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G017730	CmaCh11G004720	Cucurbita maxima (Rimu)	cgybcmaB039
CsGy1G017730	CmoCh11G004690	Cucurbita moschata (Rifu)	cgybcmoB037
CsGy1G017730	Lsi06G011680	Bottle gourd (USVL1VR-Ls)	cgyblsiB071
CsGy1G017730	Cp4.1LG18g05710	Cucurbita pepo (Zucchini)	cgybcpeB040
CsGy1G017730	Cp4.1LG04g08900	Cucurbita pepo (Zucchini)	cgybcpeB109
CsGy1G017730	MELO3C029440.2	Melon (DHL92) v3.6.1	cgybmedB045
CsGy1G017730	CsaV3_1G028790	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G017730	Cla97C06G121470	Watermelon (97103) v2	cgybwmbB063
CsGy1G017730	Bhi02G000703	Wax gourd	cgybwgoB093
CsGy1G017730	Carg14095	Silver-seed gourd	carcgybB0508
CsGy1G017730	Carg09985	Silver-seed gourd	carcgybB0132

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G017730	Wild cucumber (PI 183967)	cgybcpiB027
CsGy1G017730	Cucumber (Chinese Long) v3	cgybcucB035
CsGy1G017730	Watermelon (97103) v2	cgybwmbB060
CsGy1G017730	Wax gourd	cgybwgoB072
CsGy1G017730	Cucumber (Gy14) v2	cgybcgybB026
CsGy1G017730	Cucurbita maxima (Rimu)	cgybcmaB003
CsGy1G017730	Cucurbita maxima (Rimu)	cgybcmaB014
CsGy1G017730	Cucurbita maxima (Rimu)	cgybcmaB109
CsGy1G017730	Cucurbita moschata (Rifu)	cgybcmoB004
CsGy1G017730	Cucurbita moschata (Rifu)	cgybcmoB014
CsGy1G017730	Cucurbita pepo (Zucchini)	cgybcpeB104
CsGy1G017730	Cucurbita pepo (Zucchini)	cgybcpeB141
CsGy1G017730	Cucumber (Chinese Long) v2	cgybcuB030
CsGy1G017730	Bottle gourd (USVL1VR-Ls)	cgyblsiB051
CsGy1G017730	Bottle gourd (USVL1VR-Ls)	cgyblsiB060
CsGy1G017730	Melon (DHL92) v3.5.1	cgybmeB072
CsGy1G017730	Melon (DHL92) v3.6.1	cgybmedB068
CsGy1G017730	Watermelon (Charleston Gray)	cgybwcgB061
CsGy1G017730	Watermelon (97103) v1	cgybwmB039