MELO3C010236 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010236
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCytochrome c oxidase, subunit Vib family protein
Locationchr2 : 15021467 .. 15025196 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCGATTGTGAAAGAGACCAAGAAACCGTAGCAGCTCCGTCTTCGCAGGAACTATGGCTGTCGAAGCTGACTCATCTGGAGGCTCCGATGAAGTTCATACCGACGTTCTATCGGAATCAAGACAAGCTTGCTACAAGGTGCTCTAACTCAATCACTAATTCTCTACCATTTCTGTTACATAATAATTTTTATGAGTGTTGATAAAATTTGATGCGTCTTAACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCTGATAAAAAACCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCTGATTATGTCAAACTTTGCAGAGCTTCTTGGGTAAATGTCGTTTCTCGATCACTGGAGGTTACGGTAACATATTAGGTCTATTAGGTTTTGATGGTGTTTATAATTTTGTAGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACAAAGATTTGAGGAGAGGTCCGTTGATACTTCCTCAGCCTTACACTTTTAAGCCCACTAATTAAACTAAACACAATCTCTCCGGATCAACATTGGGCGGTCAGAGTCTCATCACTATTGATATTTTGTATTTGTTGTTTTTGCTTCTTCTTCTTTTACTCTGTATAGAAATGACTGTGGAAATAGGTTTAGTAATAATTTCCATCTTCTTACCGGACTACAAAACCTTATTCCTTCCCTTTTTGTGCATTTAGTTTTAAGGTATGACGAAGAATTAAATTTACCTTCACCCATTGACTTAAGCTTTTGGGTGAAGGCAAATTTAATAGAATATCTAACACTCCCCTAATAGAATACCTTTACCC

mRNA sequence

AACCGATTGTGAAAGAGACCAAGAAACCGTAGCAGCTCCGTCTTCGCAGGAACTATGGCTGTCGAAGCTGACTCATCTGGAGGCTCCGATGAAGTTCATACCGACGTTCTATCGGAATCAAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCTGATAAAAAACCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCTGATTATGTCAAACTTTGCAGAGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACAAAGATTTGAGGAGAGGTCCGTTGATACTTCCTCAGCCTTACACTTTTAAGCCCACTAATTAAACTAAACACAATCTCTCCGGATCAACATTGGGCGGTCAGAGTCTCATCACTATTGATATTTTGTATTTGTTGTTTTTGCTTCTTCTTCTTTTACTCTGTATAGAAATGACTGTGGAAATAGGTTTAGTAATAATTTCCATCTTCTTACCGGACTACAAAACCTTATTCCTTCCCTTTTTGTGCATTTAGTTTTAAGGTATGACGAAGAATTAAATTTACCTTCACCCATTGACTTAAGCTTTTGGGTGAAGGCAAATTTAATAGAATATCTAACACTCCCCTAATAGAATACCTTTACCC

Coding sequence (CDS)

ATGGCTGTCGAAGCTGACTCATCTGGAGGCTCCGATGAAGTTCATACCGACGTTCTATCGGAATCAAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCTGATAAAAAACCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCTGATTATGTCAAACTTTGCAGAGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACAAAGATTTGAGGAGAGGTCCGTTGATACTTCCTCAGCCTTACACTTTTAAGCCCACTAATTAA

Protein sequence

MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN*
Homology
[Close]
BLAST of MELO3C010236 vs. TrEMBL
Match: A0A0A0LTX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G269850 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.3e-58
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1 

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA EADSSGGSDEVHTDVLSESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 115
           ALRADY KLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]
BLAST of MELO3C010236 vs. TrEMBL
Match: W9RFM4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002942 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 8.6e-45
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 1 

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           M+ E  +S    EVHTDVLSE+RQACYKARDAFYAC+EKES KKPTEI  VGL+YP+EC 
Sbjct: 1   MSKETYASRNPTEVHTDVLSEARQACYKARDAFYACLEKESVKKPTEITPVGLLYPSECN 60

Query: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 115
           A RA+YVKLCR+SWV HFDR++C+N RVQRLLDD+D RRGPL+LPQPYTFKPTN
Sbjct: 61  ASRAEYVKLCRSSWVNHFDRQYCRNIRVQRLLDDRDTRRGPLVLPQPYTFKPTN 114

[Close]
BLAST of MELO3C010236 vs. TrEMBL
Match: A0A0B2SEW6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_036983 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.3e-44
Identity = 83/112 (74.11%), Postives = 98/112 (87.50%), Query Frame = 1 

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA+EA ++   D++HTDVL+++R +CYKARDAFYAC+EKESDKKPTEIASVGL+YP ECK
Sbjct: 1   MALEAYAAANPDKIHTDVLTKARDSCYKARDAFYACLEKESDKKPTEIASVGLLYPLECK 60

Query: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKP 113
             R +YVK CR+SWVKHFDR++CQN RVQRLLDDK  RRGPL LPQPYTFKP
Sbjct: 61  ECRNEYVKQCRSSWVKHFDRQYCQNKRVQRLLDDKGSRRGPLTLPQPYTFKP 112

[Close]
BLAST of MELO3C010236 vs. TrEMBL
Match: I1JGN2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G202700 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.3e-44
Identity = 83/112 (74.11%), Postives = 98/112 (87.50%), Query Frame = 1 

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA+EA ++   D++HTDVL+++R +CYKARDAFYAC+EKESDKKPTEIASVGL+YP ECK
Sbjct: 1   MALEAYAAANPDKIHTDVLTKARDSCYKARDAFYACLEKESDKKPTEIASVGLLYPLECK 60

Query: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKP 113
             R +YVK CR+SWVKHFDR++CQN RVQRLLDDK  RRGPL LPQPYTFKP
Sbjct: 61  ECRNEYVKQCRSSWVKHFDRQYCQNKRVQRLLDDKGSRRGPLTLPQPYTFKP 112

[Close]
BLAST of MELO3C010236 vs. TrEMBL
Match: A0A151SFH9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_024486 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.8e-43
Identity = 82/114 (71.93%), Postives = 98/114 (85.96%), Query Frame = 1 

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA+EA S+   D++H DVL+++R+ACYKARDAFYAC+E ESDKKPTEIASVGL+YP ECK
Sbjct: 1   MALEAYSAANPDKIHADVLTKAREACYKARDAFYACLENESDKKPTEIASVGLLYPLECK 60

Query: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 115
             R  YVK CR++WVKHFDR++CQN RVQRLLDDK  RRGPL+LPQP+TFKP N
Sbjct: 61  QCRDQYVKHCRSAWVKHFDRQYCQNKRVQRLLDDKGSRRGPLMLPQPHTFKPNN 114

[Close]
BLAST of MELO3C010236 vs. TAIR10
Match: AT5G58005.1 (AT5G58005.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 165.2 bits (417), Expect = 2.3e-41
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = 1 

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA++  +S   ++VH DVL ++R ACYKARDAFYAC+EKES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPT 114
             R  +V  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+ LPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

[Close]
BLAST of MELO3C010236 vs. NCBI nr
Match: gi|659086321|ref|XP_008443871.1| (PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 1.4e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 115
           ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]
BLAST of MELO3C010236 vs. NCBI nr
Match: gi|449457913|ref|XP_004146692.1| (PREDICTED: uncharacterized protein LOC101212489 isoform X2 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 3.4e-58
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1 

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA EADSSGGSDEVHTDVLSESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 115
           ALRADY KLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]
BLAST of MELO3C010236 vs. NCBI nr
Match: gi|659086325|ref|XP_008443874.1| (PREDICTED: uncharacterized protein LOC103487365 isoform X2 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 9.8e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 100
           ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 99

[Close]
BLAST of MELO3C010236 vs. NCBI nr
Match: gi|778660278|ref|XP_011655954.1| (PREDICTED: cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 2.4e-48
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 1 

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA EADSSGGSDEVHTDVLSESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 100
           ALRADY KLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRR 99

[Close]
BLAST of MELO3C010236 vs. NCBI nr
Match: gi|703087694|ref|XP_010093340.1| (hypothetical protein L484_002942 [Morus notabilis])

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-44
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 1 

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           M+ E  +S    EVHTDVLSE+RQACYKARDAFYAC+EKES KKPTEI  VGL+YP+EC 
Sbjct: 1   MSKETYASRNPTEVHTDVLSEARQACYKARDAFYACLEKESVKKPTEITPVGLLYPSECN 60

Query: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 115
           A RA+YVKLCR+SWV HFDR++C+N RVQRLLDD+D RRGPL+LPQPYTFKPTN
Sbjct: 61  ASRAEYVKLCRSSWVNHFDRQYCRNIRVQRLLDDRDTRRGPLVLPQPYTFKPTN 114

The following BLAST results are available for this feature:
BLAST of MELO3C010236 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTX1_CUCSA2.3e-5897.37Uncharacterized protein OS=Cucumis sativus GN=Csa_1G269850 PE=4 SV=1[more]
W9RFM4_9ROSA8.6e-4575.44Uncharacterized protein OS=Morus notabilis GN=L484_002942 PE=4 SV=1[more]
A0A0B2SEW6_GLYSO7.3e-4474.11Uncharacterized protein OS=Glycine soja GN=glysoja_036983 PE=4 SV=1[more]
I1JGN2_SOYBN7.3e-4474.11Uncharacterized protein OS=Glycine max GN=GLYMA_02G202700 PE=4 SV=1[more]
A0A151SFH9_CAJCA2.8e-4371.93Uncharacterized protein OS=Cajanus cajan GN=KK1_024486 PE=4 SV=1[more]
BLAST of MELO3C010236 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58005.12.3e-4165.49 Cytochrome c oxidase, subunit Vib family protein[more]
BLAST of MELO3C010236 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086321|ref|XP_008443871.1|1.4e-59100.00PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo][more]
gi|449457913|ref|XP_004146692.1|3.4e-5897.37PREDICTED: uncharacterized protein LOC101212489 isoform X2 [Cucumis sativus][more]
gi|659086325|ref|XP_008443874.1|9.8e-50100.00PREDICTED: uncharacterized protein LOC103487365 isoform X2 [Cucumis melo][more]
gi|778660278|ref|XP_011655954.1|2.4e-4896.97PREDICTED: cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis sativus][more]
gi|703087694|ref|XP_010093340.1|1.2e-4475.44hypothetical protein L484_002942 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003213Cyt_c_oxidase_su6B
IPR003213Cyt_c_oxidase_su6B
Vocabulary: Molecular Function
TermDefinition
GO:0004129cytochrome-c oxidase activity
GO:0004129cytochrome-c oxidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005739mitochondrion
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045277 respiratory chain complex IV
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU53321melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010236T1MELO3C010236T1mRNA
MELO3C010236T2MELO3C010236T2mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU53321MU53321transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003213Cytochrome c oxidase, subunit VIbGENE3DG3DSA:1.10.10.140coord: 21..82
score: 4.
IPR003213Cytochrome c oxidase, subunit VIbPFAMPF02297COX6Bcoord: 21..92
score: 8.4
IPR003213Cytochrome c oxidase, subunit VIbunknownSSF47694Cytochrome c oxidase subunit hcoord: 22..82
score: 1.3
NoneNo IPR availablePANTHERPTHR11387CYTOCHROME C OXIDASE POLYPEPTIDE VIBcoord: 21..99
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C010236Csa1G269850Cucumber (Chinese Long) v2cumeB057
MELO3C010236Cla018723Watermelon (97103) v1mewmB293
MELO3C010236ClCG06G012280Watermelon (Charleston Gray)mewcgB258
MELO3C010236Cla97C06G121470Watermelon (97103) v2mewmbB265
MELO3C010236Bhi02G000703Wax gourdmewgoB290
MELO3C010236CSPI01G17550Wild cucumber (PI 183967)cpimeB057
MELO3C010236Cucsa.350950Cucumber (Gy14) v1cgymeB566
MELO3C010236CmaCh11G004720Cucurbita maxima (Rimu)cmameB105
MELO3C010236CmoCh11G004690Cucurbita moschata (Rifu)cmomeB098
MELO3C010236Lsi06G011680Bottle gourd (USVL1VR-Ls)lsimeB402
MELO3C010236Cp4.1LG18g05710Cucurbita pepo (Zucchini)cpemeB334
MELO3C010236Cp4.1LG04g08900Cucurbita pepo (Zucchini)cpemeB621
MELO3C010236CsGy1G017730Cucumber (Gy14) v2cgybmeB049
MELO3C010236Carg14095Silver-seed gourdcarmeB0509
MELO3C010236Carg09985Silver-seed gourdcarmeB0131
MELO3C010236CsaV3_1G028790Cucumber (Chinese Long) v3cucmeB054
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010236Cucumber (Chinese Long) v3cucmeB285
MELO3C010236Watermelon (97103) v2mewmbB259
MELO3C010236Melon (DHL92) v3.5.1memeB116
MELO3C010236Cucumber (Gy14) v1cgymeB452
MELO3C010236Cucurbita maxima (Rimu)cmameB058
MELO3C010236Cucurbita moschata (Rifu)cmomeB049
MELO3C010236Wild cucumber (PI 183967)cpimeB279
MELO3C010236Cucumber (Chinese Long) v2cumeB289
MELO3C010236Watermelon (Charleston Gray)mewcgB253
MELO3C010236Watermelon (97103) v1mewmB278