Cp4.1LG18g05710 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g05710
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCytochrome c oxidase, subunit Vib family protein
LocationCp4.1LG18 : 6112161 .. 6112642 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTCATAGCGACGTTCTAGCGGAATCTAGACAAGCTTGCTACAAGGTTCTCTCTCTCAATCACTTATTCTATAGGTTTCTGTTTGATAATAATGTTTGAGTGTTAATATGGCAATTTGATGCATCTGAACAAGCCTCGCGATAGTTTTTATGCTTGTGTGGAGAAGAAATCGGACAAAAAATCCACTGAAATAGCTTCTGTTGGCCTAATTTATCCTGCCGAGTGTAAAATTTTGAGGGCCGAATTTGTCAAGCTTTGCAGGTTTCTTGGGTGAATGTCATCGTCTGATCACTTGAGATTTCAGTAAGGCGTTGGTTCTTAGAATTTATGGTCTAGTAGGTTTTGATTTGGTAGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACGAAGATTCAAGGAGAGGTCCCTTGATGCTCCCGCAACCCAATACTTTTAAGCCTACTGATTAA

mRNA sequence

ATGAATTTTTATGCTTGTGTGGAGAAGAAATCGGACAAAAAATCCACTGAAATAGCTTCTGTTGGCCTAATTTATCCTGCCGAGTGTAAAATTTTGAGGGCCGAATTTGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACGAAGATTCAAGGAGAGGTCCCTTGATGCTCCCGCAACCCAATACTTTTAAGCCTACTGATTAA

Coding sequence (CDS)

ATGAATTTTTATGCTTGTGTGGAGAAGAAATCGGACAAAAAATCCACTGAAATAGCTTCTGTTGGCCTAATTTATCCTGCCGAGTGTAAAATTTTGAGGGCCGAATTTGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACGAAGATTCAAGGAGAGGTCCCTTGATGCTCCCGCAACCCAATACTTTTAAGCCTACTGATTAA

Protein sequence

MNFYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVKHFDRKFCQNSRVQRLLDDEDSRRGPLMLPQPNTFKPTD
Homology
[Close]
BLAST of Cp4.1LG18g05710 vs. TrEMBL
Match: A0A0A0LTX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G269850 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.4e-27
Identity = 63/82 (76.83%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEF--------VKHFDRKFCQNSRVQRLL 62
           FYAC+EK+SDKK TEIASVGLIYPAECK LRA++        VKHFDRKFCQNSRVQRLL
Sbjct: 33  FYACMEKESDKKPTEIASVGLIYPAECKALRADYAKLCRASWVKHFDRKFCQNSRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPTD 77
           DD+D RRGPL+LPQP TFKPT+
Sbjct: 93  DDKDLRRGPLILPQPYTFKPTN 114

[Close]
BLAST of Cp4.1LG18g05710 vs. TrEMBL
Match: A0A151SFH9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_024486 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.8e-23
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVKH--------FDRKFCQNSRVQRLL 62
           FYAC+E +SDKK TEIASVGL+YP ECK  R ++VKH        FDR++CQN RVQRLL
Sbjct: 33  FYACLENESDKKPTEIASVGLLYPLECKQCRDQYVKHCRSAWVKHFDRQYCQNKRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPTD 77
           DD+ SRRGPLMLPQP+TFKP +
Sbjct: 93  DDKGSRRGPLMLPQPHTFKPNN 114

[Close]
BLAST of Cp4.1LG18g05710 vs. TrEMBL
Match: A0A0B2SEW6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_036983 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.6e-23
Identity = 56/80 (70.00%), Postives = 63/80 (78.75%), Query Frame = 1 

Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVK--------HFDRKFCQNSRVQRLL 62
           FYAC+EK+SDKK TEIASVGL+YP ECK  R E+VK        HFDR++CQN RVQRLL
Sbjct: 33  FYACLEKESDKKPTEIASVGLLYPLECKECRNEYVKQCRSSWVKHFDRQYCQNKRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKP 75
           DD+ SRRGPL LPQP TFKP
Sbjct: 93  DDKGSRRGPLTLPQPYTFKP 112

[Close]
BLAST of Cp4.1LG18g05710 vs. TrEMBL
Match: K7MKE4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.6e-23
Identity = 56/80 (70.00%), Postives = 63/80 (78.75%), Query Frame = 1 

Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVK--------HFDRKFCQNSRVQRLL 62
           FYAC+EK+SDKK TEIASVGL+YP ECK  R E+VK        HFDR++CQN RVQRLL
Sbjct: 74  FYACLEKESDKKPTEIASVGLLYPVECKQCRNEYVKQCRSSWVKHFDRQYCQNKRVQRLL 133

Query: 63  DDEDSRRGPLMLPQPNTFKP 75
           DD+ SRRGPL LPQP TFKP
Sbjct: 134 DDKGSRRGPLTLPQPFTFKP 153

[Close]
BLAST of Cp4.1LG18g05710 vs. TrEMBL
Match: A0A0R0FKP0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G075100 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.6e-23
Identity = 56/80 (70.00%), Postives = 63/80 (78.75%), Query Frame = 1 

Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVK--------HFDRKFCQNSRVQRLL 62
           FYAC+EK+SDKK TEIASVGL+YP ECK  R E+VK        HFDR++CQN RVQRLL
Sbjct: 44  FYACLEKESDKKPTEIASVGLLYPVECKQCRNEYVKQCRSSWVKHFDRQYCQNKRVQRLL 103

Query: 63  DDEDSRRGPLMLPQPNTFKP 75
           DD+ SRRGPL LPQP TFKP
Sbjct: 104 DDKGSRRGPLTLPQPFTFKP 123

[Close]
BLAST of Cp4.1LG18g05710 vs. TAIR10
Match: AT5G58005.1 (AT5G58005.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 106.7 bits (265), Expect = 6.5e-24
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1 

Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFV--------KHFDRKFCQNSRVQRLL 62
           FYAC+EK+S KK TEIA+VGL+YP EC   R +FV        KHFDR++C+N RVQRLL
Sbjct: 33  FYACLEKESGKKPTEIATVGLLYPKECSNSRTQFVNNCRSSWVKHFDREYCRNKRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPT 76
           DD D R+GP+ LPQP TFKP+
Sbjct: 93  DDGDERKGPMSLPQPYTFKPS 113

[Close]
BLAST of Cp4.1LG18g05710 vs. NCBI nr
Match: gi|659086321|ref|XP_008443871.1| (PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-27
Identity = 64/82 (78.05%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEF--------VKHFDRKFCQNSRVQRLL 62
           FYACVEK+SDKK TEIASVGLIYPAECK LRA++        VKHFDRKFCQNSRVQRLL
Sbjct: 33  FYACVEKESDKKPTEIASVGLIYPAECKALRADYVKLCRASWVKHFDRKFCQNSRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPTD 77
           DD+D RRGPL+LPQP TFKPT+
Sbjct: 93  DDKDLRRGPLILPQPYTFKPTN 114

[Close]
BLAST of Cp4.1LG18g05710 vs. NCBI nr
Match: gi|449457913|ref|XP_004146692.1| (PREDICTED: uncharacterized protein LOC101212489 isoform X2 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 3.4e-27
Identity = 63/82 (76.83%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEF--------VKHFDRKFCQNSRVQRLL 62
           FYAC+EK+SDKK TEIASVGLIYPAECK LRA++        VKHFDRKFCQNSRVQRLL
Sbjct: 33  FYACMEKESDKKPTEIASVGLIYPAECKALRADYAKLCRASWVKHFDRKFCQNSRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPTD 77
           DD+D RRGPL+LPQP TFKPT+
Sbjct: 93  DDKDLRRGPLILPQPYTFKPTN 114

[Close]
BLAST of Cp4.1LG18g05710 vs. NCBI nr
Match: gi|1009109844|ref|XP_015892421.1| (PREDICTED: uncharacterized protein LOC107426691 [Ziziphus jujuba])

HSP 1 Score: 119.0 bits (297), Expect = 3.6e-24
Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = 1 

Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEF--------VKHFDRKFCQNSRVQRLL 62
           FYACVEK++DKK TEIASVGL+YP++CK  RAEF        V HFDR++C+N RVQRLL
Sbjct: 80  FYACVEKETDKKPTEIASVGLLYPSDCKASRAEFEKLCRASWVNHFDRQYCKNRRVQRLL 139

Query: 63  DDEDSRRGPLMLPQPNTFKPT 76
           DD++SRRGPL+LPQP TFKPT
Sbjct: 140 DDKESRRGPLLLPQPYTFKPT 160

[Close]
BLAST of Cp4.1LG18g05710 vs. NCBI nr
Match: gi|1012342398|gb|KYP53592.1| (hypothetical protein KK1_024486 [Cajanus cajan])

HSP 1 Score: 115.5 bits (288), Expect = 3.9e-23
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVKH--------FDRKFCQNSRVQRLL 62
           FYAC+E +SDKK TEIASVGL+YP ECK  R ++VKH        FDR++CQN RVQRLL
Sbjct: 33  FYACLENESDKKPTEIASVGLLYPLECKQCRDQYVKHCRSAWVKHFDRQYCQNKRVQRLL 92

Query: 63  DDEDSRRGPLMLPQPNTFKPTD 77
           DD+ SRRGPLMLPQP+TFKP +
Sbjct: 93  DDKGSRRGPLMLPQPHTFKPNN 114

[Close]
BLAST of Cp4.1LG18g05710 vs. NCBI nr
Match: gi|947053618|gb|KRH03071.1| (hypothetical protein GLYMA_17G075100 [Glycine max])

HSP 1 Score: 115.2 bits (287), Expect = 5.2e-23
Identity = 56/80 (70.00%), Postives = 63/80 (78.75%), Query Frame = 1 

Query: 3   FYACVEKKSDKKSTEIASVGLIYPAECKILRAEFVK--------HFDRKFCQNSRVQRLL 62
           FYAC+EK+SDKK TEIASVGL+YP ECK  R E+VK        HFDR++CQN RVQRLL
Sbjct: 44  FYACLEKESDKKPTEIASVGLLYPVECKQCRNEYVKQCRSSWVKHFDRQYCQNKRVQRLL 103

Query: 63  DDEDSRRGPLMLPQPNTFKP 75
           DD+ SRRGPL LPQP TFKP
Sbjct: 104 DDKGSRRGPLTLPQPFTFKP 123

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g05710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g05710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTX1_CUCSA2.4e-2776.83Uncharacterized protein OS=Cucumis sativus GN=Csa_1G269850 PE=4 SV=1[more]
A0A151SFH9_CAJCA2.8e-2367.07Uncharacterized protein OS=Cajanus cajan GN=KK1_024486 PE=4 SV=1[more]
A0A0B2SEW6_GLYSO3.6e-2370.00Uncharacterized protein OS=Glycine soja GN=glysoja_036983 PE=4 SV=1[more]
K7MKE4_SOYBN3.6e-2370.00Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0R0FKP0_SOYBN3.6e-2370.00Uncharacterized protein OS=Glycine max GN=GLYMA_17G075100 PE=4 SV=1[more]
BLAST of Cp4.1LG18g05710 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58005.16.5e-2461.73 Cytochrome c oxidase, subunit Vib family protein[more]
BLAST of Cp4.1LG18g05710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086321|ref|XP_008443871.1|1.5e-2778.05PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo][more]
gi|449457913|ref|XP_004146692.1|3.4e-2776.83PREDICTED: uncharacterized protein LOC101212489 isoform X2 [Cucumis sativus][more]
gi|1009109844|ref|XP_015892421.1|3.6e-2469.14PREDICTED: uncharacterized protein LOC107426691 [Ziziphus jujuba][more]
gi|1012342398|gb|KYP53592.1|3.9e-2367.07hypothetical protein KK1_024486 [Cajanus cajan][more]
gi|947053618|gb|KRH03071.1|5.2e-2370.00hypothetical protein GLYMA_17G075100 [Glycine max][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045277 respiratory chain complex IV
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g05710.1Cp4.1LG18g05710.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG18g05710Cucsa.350950Cucumber (Gy14) v1cgycpeB0916
Cp4.1LG18g05710CmaCh11G004720Cucurbita maxima (Rimu)cmacpeB132
Cp4.1LG18g05710CmoCh11G004690Cucurbita moschata (Rifu)cmocpeB108
Cp4.1LG18g05710Cla018723Watermelon (97103) v1cpewmB372
Cp4.1LG18g05710Csa1G269850Cucumber (Chinese Long) v2cpecuB350
Cp4.1LG18g05710MELO3C010236Melon (DHL92) v3.5.1cpemeB334
Cp4.1LG18g05710ClCG06G012280Watermelon (Charleston Gray)cpewcgB335
Cp4.1LG18g05710CSPI01G17550Wild cucumber (PI 183967)cpecpiB351
Cp4.1LG18g05710Lsi06G011680Bottle gourd (USVL1VR-Ls)cpelsiB307
Cp4.1LG18g05710MELO3C029440.2Melon (DHL92) v3.6.1cpemedB392
Cp4.1LG18g05710CsaV3_1G028790Cucumber (Chinese Long) v3cpecucB0429
Cp4.1LG18g05710Bhi02G000703Wax gourdcpewgoB0466
Cp4.1LG18g05710CsGy1G017730Cucumber (Gy14) v2cgybcpeB040
Cp4.1LG18g05710Carg14095Silver-seed gourdcarcpeB0715
Cp4.1LG18g05710Carg09985Silver-seed gourdcarcpeB0185
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG18g05710Cp4.1LG04g08900Cucurbita pepo (Zucchini)cpecpeB360
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG18g05710Cucurbita pepo (Zucchini)cpecpeB113
Cp4.1LG18g05710Cucurbita pepo (Zucchini)cpecpeB370
Cp4.1LG18g05710Cucumber (Gy14) v1cgycpeB0352
Cp4.1LG18g05710Cucurbita maxima (Rimu)cmacpeB038
Cp4.1LG18g05710Cucurbita maxima (Rimu)cmacpeB080
Cp4.1LG18g05710Cucurbita maxima (Rimu)cmacpeB775
Cp4.1LG18g05710Cucurbita moschata (Rifu)cmocpeB013
Cp4.1LG18g05710Cucurbita moschata (Rifu)cmocpeB055
Cp4.1LG18g05710Cucurbita moschata (Rifu)cmocpeB730
Cp4.1LG18g05710Bottle gourd (USVL1VR-Ls)cpelsiB297
Cp4.1LG18g05710Watermelon (Charleston Gray)cpewcgB334
Cp4.1LG18g05710Watermelon (97103) v1cpewmB362
Cp4.1LG18g05710Melon (DHL92) v3.5.1cpemeB343
Cp4.1LG18g05710Cucumber (Gy14) v2cgybcpeB499
Cp4.1LG18g05710Melon (DHL92) v3.6.1cpemedB405
Cp4.1LG18g05710Silver-seed gourdcarcpeB0897
Cp4.1LG18g05710Cucumber (Chinese Long) v3cpecucB0460
Cp4.1LG18g05710Wax gourdcpewgoB0454