MELO3C029440.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C029440.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionCytochrome C oxidase, subunit VIb family protein
Locationchr02 : 15823470 .. 15824376 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATACATAAATCTTCACAATTATAGCAAAATGTATAAGATGATTCTATATCGTCTTGATCCGAAAATGGATATAGAGAGTTAAACTTTGGTTTGTGGTTTGAAAATCCTCCAAATTCAAATTCATATCCAAATAATTTCCTACCGTCAAAGAATTTGAAGTTTGAAATCTCACATTATATTACTTTTCCTATATCCGACTTTTTATATTTGAAATATTTGAATTAGAGAAATTTGGTCCTCAGCGATAAGATTCATAGAGTCCAATGAGATTCGGCCCAAAGCTTAAGCCCAAAACTATGGACCGAAATGGGTTGGGACGAGACGACGAAAAACCCCAACCGATTGTGAAAGAGACCAAGAAACCGTAGCAGCTCCGTCTTCGCAGGAACTATGGCTGTCGAAGCTGACTCATCTGGAGGCTCCGATGAAGTTCATACCGACGTTCTATCGGAATCAAGACAAGCTTGCTACAAGGTGCTCTAACTCAATCACTAATTCTCTACCATTTCTGTTACATAATAATTTTTATGAGTGTTGATAAAATTTGATGCGTCTTAACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCTGATAAAAAACCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCTGATTATGTCAAACTTTGCAGAGCTTCTTGGGTAAATGTCGTTTCTCGATCACTGGAGGTTACGGTAACATATTAGGTCTATTAGGTTTTGATGGTGTTTATAATTTTGTAGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACAAAGATTTGAGGAGAGGTCCGTTGATACTTCCTCAGCCTTACACTTTTAAGCCCACTAATTAA

mRNA sequence

AAAATACATAAATCTTCACAATTATAGCAAAATGTATAAGATGATTCTATATCGTCTTGATCCGAAAATGGATATAGAGAGTTAAACTTTGGTTTGTGGTTTGAAAATCCTCCAAATTCAAATTCATATCCAAATAATTTCCTACCGTCAAAGAATTTGAAGTTTGAAATCTCACATTATATTACTTTTCCTATATCCGACTTTTTATATTTGAAATATTTGAATTAGAGAAATTTGGTCCTCAGCGATAAGATTCATAGAGTCCAATGAGATTCGGCCCAAAGCTTAAGCCCAAAACTATGGACCGAAATGGGTTGGGACGAGACGACGAAAAACCCCAACCGATTGTGAAAGAGACCAAGAAACCGTAGCAGCTCCGTCTTCGCAGGAACTATGGCTGTCGAAGCTGACTCATCTGGAGGCTCCGATGAAGTTCATACCGACGTTCTATCGGAATCAAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCTGATAAAAAACCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCTGATTATGTCAAACTTTGCAGAGCTTCTTGGGTAAATGTCGTTTCTCGATCACTGGAGGTTACGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACAAAGATTTGAGGAGAGGTCCGTTGATACTTCCTCAGCCTTACACTTTTAAGCCCACTAATTAA

Coding sequence (CDS)

ATGGCTGTCGAAGCTGACTCATCTGGAGGCTCCGATGAAGTTCATACCGACGTTCTATCGGAATCAAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCTGATAAAAAACCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCTGATTATGTCAAACTTTGCAGAGCTTCTTGGGTAAATGTCGTTTCTCGATCACTGGAGGTTACGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTAGATGACAAAGATTTGAGGAGAGGTCCGTTGATACTTCCTCAGCCTTACACTTTTAAGCCCACTAATTAA

Protein sequence

MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRADYVKLCRASWVNVVSRSLEVTVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN
BLAST of MELO3C029440.2 vs. NCBI nr
Match: XP_008443871.1 (PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_008443872.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 2.3e-56
Identity = 114/125 (91.20%), Postives = 114/125 (91.20%), Query Frame = 0

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYVKLCRASWVNVVSRSLEVTVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT 120
           ALRADYVKLCRASW           VKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT
Sbjct: 61  ALRADYVKLCRASW-----------VKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT 114

Query: 121 FKPTN 126
           FKPTN
Sbjct: 121 FKPTN 114

BLAST of MELO3C029440.2 vs. NCBI nr
Match: XP_004146692.1 (PREDICTED: uncharacterized protein LOC101212489 isoform X2 [Cucumis sativus] >XP_011655945.1 PREDICTED: uncharacterized protein LOC101212489 isoform X2 [Cucumis sativus] >KGN65243.1 hypothetical protein Csa_1G269850 [Cucumis sativus])

HSP 1 Score: 223.0 bits (567), Expect = 5.6e-55
Identity = 111/125 (88.80%), Postives = 112/125 (89.60%), Query Frame = 0

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA EADSSGGSDEVHTDVLSESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYVKLCRASWVNVVSRSLEVTVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT 120
           ALRADY KLCRASW           VKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT
Sbjct: 61  ALRADYAKLCRASW-----------VKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT 114

Query: 121 FKPTN 126
           FKPTN
Sbjct: 121 FKPTN 114

BLAST of MELO3C029440.2 vs. NCBI nr
Match: XP_022134674.1 (uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncharacterized protein LOC111006886 [Momordica charantia])

HSP 1 Score: 209.1 bits (531), Expect = 8.4e-51
Identity = 104/125 (83.20%), Postives = 110/125 (88.00%), Query Frame = 0

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEAD+SGG DEVH+DVL+ SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYVKLCRASWVNVVSRSLEVTVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT 120
           ALRA++VKLCRASW           VKHFDRKFCQNSRVQRLLDDKD RRGPL LPQPYT
Sbjct: 61  ALRAEFVKLCRASW-----------VKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYT 114

Query: 121 FKPTN 126
           FKPT+
Sbjct: 121 FKPTS 114

BLAST of MELO3C029440.2 vs. NCBI nr
Match: XP_022973432.1 (cytochrome c oxidase assembly factor 6 [Cucurbita maxima])

HSP 1 Score: 207.2 bits (526), Expect = 3.2e-50
Identity = 101/125 (80.80%), Postives = 109/125 (87.20%), Query Frame = 0

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA+E D SGGS+EVHTDVL+E RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ALRADYVKLCRASWVNVVSRSLEVTVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT 120
           A RA++VKLCRASW           VKHFDRKFCQNSRVQRLLDDKD RRGPL+LPQPYT
Sbjct: 61  ASRAEFVKLCRASW-----------VKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYT 114

Query: 121 FKPTN 126
           FKPT+
Sbjct: 121 FKPTS 114

BLAST of MELO3C029440.2 vs. NCBI nr
Match: XP_022926034.1 (cytochrome c oxidase assembly factor 6 [Cucurbita moschata])

HSP 1 Score: 206.1 bits (523), Expect = 7.1e-50
Identity = 101/125 (80.80%), Postives = 108/125 (86.40%), Query Frame = 0

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA E D SGGS+EVHTDVL+E RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ALRADYVKLCRASWVNVVSRSLEVTVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT 120
           A RA++VKLCRASW           VKHFDRKFCQNSRVQRLLDDKD RRGPL+LPQPYT
Sbjct: 61  ASRAEFVKLCRASW-----------VKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYT 114

Query: 121 FKPTN 126
           FKPT+
Sbjct: 121 FKPTS 114

BLAST of MELO3C029440.2 vs. TAIR10
Match: AT5G58005.1 (Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 141.7 bits (356), Expect = 3.0e-34
Identity = 68/124 (54.84%), Postives = 86/124 (69.35%), Query Frame = 0

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA++  +S   ++VH DVL ++R ACY      YAC+EKES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYXXXXXXYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ALRADYVKLCRASWVNVVSRSLEVTVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT 120
             R  +V  CR+SW           VKHFDR++C+N RVQRLLDD D R+GP+ LPQPYT
Sbjct: 61  NSRTQFVNNCRSSW-----------VKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYT 113

Query: 121 FKPT 125
           FKP+
Sbjct: 121 FKPS 113

BLAST of MELO3C029440.2 vs. TrEMBL
Match: tr|A0A1S3B9T5|A0A1S3B9T5_CUCME (uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.5e-56
Identity = 114/125 (91.20%), Postives = 114/125 (91.20%), Query Frame = 0

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYVKLCRASWVNVVSRSLEVTVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT 120
           ALRADYVKLCRASW           VKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT
Sbjct: 61  ALRADYVKLCRASW-----------VKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT 114

Query: 121 FKPTN 126
           FKPTN
Sbjct: 121 FKPTN 114

BLAST of MELO3C029440.2 vs. TrEMBL
Match: tr|A0A0A0LTX1|A0A0A0LTX1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.7e-55
Identity = 111/125 (88.80%), Postives = 112/125 (89.60%), Query Frame = 0

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA EADSSGGSDEVHTDVLSESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYVKLCRASWVNVVSRSLEVTVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT 120
           ALRADY KLCRASW           VKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT
Sbjct: 61  ALRADYAKLCRASW-----------VKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT 114

Query: 121 FKPTN 126
           FKPTN
Sbjct: 121 FKPTN 114

BLAST of MELO3C029440.2 vs. TrEMBL
Match: tr|A0A1S3B914|A0A1S3B914_CUCME (uncharacterized protein LOC103487365 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.8e-46
Identity = 99/110 (90.00%), Postives = 99/110 (90.00%), Query Frame = 0

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRADYVKLCRASWVNVVSRSLEVTVKHFDRKFCQNSRVQRLLDDKDLRR 111
           ALRADYVKLCRASW           VKHFDRKFCQNSRVQRLLDDKDLRR
Sbjct: 61  ALRADYVKLCRASW-----------VKHFDRKFCQNSRVQRLLDDKDLRR 99

BLAST of MELO3C029440.2 vs. TrEMBL
Match: tr|W9RFM4|W9RFM4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002942 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.1e-42
Identity = 87/125 (69.60%), Postives = 100/125 (80.00%), Query Frame = 0

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           M+ E  +S    EVHTDVLSE+RQACYKARDAFYAC+EKES KKPTEI  VGL+YP+EC 
Sbjct: 1   MSKETYASRNPTEVHTDVLSEARQACYKARDAFYACLEKESVKKPTEITPVGLLYPSECN 60

Query: 61  ALRADYVKLCRASWVNVVSRSLEVTVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT 120
           A RA+YVKLCR+SWVN           HFDR++C+N RVQRLLDD+D RRGPL+LPQPYT
Sbjct: 61  ASRAEYVKLCRSSWVN-----------HFDRQYCRNIRVQRLLDDRDTRRGPLVLPQPYT 114

Query: 121 FKPTN 126
           FKPTN
Sbjct: 121 FKPTN 114

BLAST of MELO3C029440.2 vs. TrEMBL
Match: tr|A0A2P5F3B6|A0A2P5F3B6_9ROSA (Cytochrome c oxidase, subunit VIb OS=Trema orientalis OX=63057 GN=TorRG33x02_119190 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.8e-42
Identity = 87/124 (70.16%), Postives = 100/124 (80.65%), Query Frame = 0

Query: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           M+ EA      +E+HTDVLSE+RQACYKARDAFYAC+EKES+KKPTEIASVGL+YP+ECK
Sbjct: 1   MSKEAYVPRNPNEIHTDVLSEARQACYKARDAFYACLEKESEKKPTEIASVGLLYPSECK 60

Query: 61  ALRADYVKLCRASWVNVVSRSLEVTVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYT 120
           A RA +VKLCR SWVN           HFDR++C+N RV RLLDDKD RRGPL+LPQPYT
Sbjct: 61  ASRAKFVKLCRGSWVN-----------HFDRQYCRNRRVHRLLDDKDSRRGPLVLPQPYT 113

Query: 121 FKPT 125
           FKPT
Sbjct: 121 FKPT 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008443871.12.3e-5691.20PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_00... [more]
XP_004146692.15.6e-5588.80PREDICTED: uncharacterized protein LOC101212489 isoform X2 [Cucumis sativus] >XP... [more]
XP_022134674.18.4e-5183.20uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncha... [more]
XP_022973432.13.2e-5080.80cytochrome c oxidase assembly factor 6 [Cucurbita maxima][more]
XP_022926034.17.1e-5080.80cytochrome c oxidase assembly factor 6 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT5G58005.13.0e-3454.84Cytochrome c oxidase, subunit Vib family protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3B9T5|A0A1S3B9T5_CUCME1.5e-5691.20uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LTX1|A0A0A0LTX1_CUCSA3.7e-5588.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1[more]
tr|A0A1S3B914|A0A1S3B914_CUCME1.8e-4690.00uncharacterized protein LOC103487365 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|W9RFM4|W9RFM4_9ROSA2.1e-4269.60Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002942 PE=4 SV=1[more]
tr|A0A2P5F3B6|A0A2P5F3B6_9ROSA2.8e-4270.16Cytochrome c oxidase, subunit VIb OS=Trema orientalis OX=63057 GN=TorRG33x02_119... [more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR036549Cyt_c_oxidase_su6B_sf
IPR003213Cyt_c_oxidase_su6B
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045277 respiratory chain complex IV
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029440.2.1MELO3C029440.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003213Cytochrome c oxidase, subunit VIbPFAMPF02297COX6Bcoord: 21..77
e-value: 3.3E-13
score: 49.6
IPR003213Cytochrome c oxidase, subunit VIbPANTHERPTHR11387CYTOCHROME C OXIDASE POLYPEPTIDE VIBcoord: 20..124
NoneNo IPR availablePANTHERPTHR11387:SF20CYTOCHROME C OXIDASE ASSEMBLY FACTOR 6 HOMOLOGcoord: 20..124
IPR036549Cytochrome c oxidase, subunit VIb superfamilySUPERFAMILYSSF47694Cytochrome c oxidase subunit hcoord: 22..81

The following gene(s) are paralogous to this gene:

None