Carg14095 (gene) Silver-seed gourd

NameCarg14095
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCytochrome c oxidase, subunit VIb
LocationCucurbita_argyrosperma_scaffold_097 : 800728 .. 801707 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTGGAACGATCGAAAACCCCAACCGCGAAAGAAACCAAGCAACATAGCATAGCATCTCCGTCTCTGTTGTAGCAACTATGGCTCCCGAAACTGATCCGTCTGGAGGCTCGGAAGAAGTTCACACCGATGTTTTAGCGGAATTCAGACAAGCTTGCTACAAGGTTATATCTCTCAATCGCTCACTTATTCTCCACGATTTCTGTTTCTTAAGAATCCTTGAGTATTGATTTGGCAATTTCATGCATCTGGACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCAGACAAGAAGCCCACTGAAATTGCTTCTGTTGGCCTTCTTTATCCCGCTGAGTGTAAAGCCTCCAGGGCTGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTAAATTTCATGGCCTGATCCCTGAATATTTTATTAATCTGTTGGTTCTTAGAATTCATGGTTTGAAGGGTTTTTGATTTCTGGTGTTTTTGATTTGGTTGGTAGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGCCCTTTGGTACTTCCGCAGCCTTACACTTTCAAGCCCACTAGTTGAACAAAACACCATCCCCAGGCGGAACTATTTTGGGCGGTCAGAATCTCATGACTATTGTTATTTTGTTTTGTTTTCTTTTGTTCCTTCTCTTACTTTGTACAGAGATGACTGTGGCGATAAACTTCATAATAATGCACTCTTCTTACCAACTTACAAAAGCCTATTCCTTTCCTTTGATACATATAATTTGAATGTATAGTAGGATCTACTTCTAATCAGCAAAGTGAAAAATTATTTAATGAGACATCTAAAATGTGGCTGCTCTTTAATAATTGTGGGACGTGGATTCAAAAATCTGAATGCCCCCTAATAACCATTTGATATAAATTTGAAGTATTTGTGCAGTTTCTGTCTCCTA

mRNA sequence

GGTTGGAACGATCGAAAACCCCAACCGCGAAAGAAACCAAGCAACATAGCATAGCATCTCCGTCTCTGTTGTAGCAACTATGGCTCCCGAAACTGATCCGTCTGGAGGCTCGGAAGAAGTTCACACCGATGTTTTAGCGGAATTCAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCAGACAAGAAGCCCACTGAAATTGCTTCTGTTGGCCTTCTTTATCCCGCTGAGTGTAAAGCCTCCAGGGCTGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGCCCTTTGGTACTTCCGCAGCCTTACACTTTCAAGCCCACTAGTTGAACAAAACACCATCCCCAGGCGGAACTATTTTGGGCGGTCAGAATCTCATGACTATTGTTATTTTGTTTTGTTTTCTTTTGTTCCTTCTCTTACTTTGTACAGAGATGACTGTGGCGATAAACTTCATAATAATGCACTCTTCTTACCAACTTACAAAAGCCTATTCCTTTCCTTTGATACATATAATTTGAATGTATAGTAGGATCTACTTCTAATCAGCAAAGTGAAAAATTATTTAATGAGACATCTAAAATGTGGCTGCTCTTTAATAATTGTGGGACGTGGATTCAAAAATCTGAATGCCCCCTAATAACCATTTGATATAAATTTGAAGTATTTGTGCAGTTTCTGTCTCCTA

Coding sequence (CDS)

ATGGCTCCCGAAACTGATCCGTCTGGAGGCTCGGAAGAAGTTCACACCGATGTTTTAGCGGAATTCAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCAGACAAGAAGCCCACTGAAATTGCTTCTGTTGGCCTTCTTTATCCCGCTGAGTGTAAAGCCTCCAGGGCTGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGCCCTTTGGTACTTCCGCAGCCTTACACTTTCAAGCCCACTAGTTGA

Protein sequence

MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECKASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS
BLAST of Carg14095 vs. NCBI nr
Match: XP_022926034.1 (cytochrome c oxidase assembly factor 6 [Cucurbita moschata])

HSP 1 Score: 238.8 bits (608), Expect = 9.0e-60
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0

Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK
Sbjct: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

BLAST of Carg14095 vs. NCBI nr
Match: XP_022973432.1 (cytochrome c oxidase assembly factor 6 [Cucurbita maxima])

HSP 1 Score: 235.0 bits (598), Expect = 1.3e-58
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0

Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA ETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

BLAST of Carg14095 vs. NCBI nr
Match: XP_023529846.1 (cytochrome c oxidase assembly factor 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 232.3 bits (591), Expect = 8.4e-58
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 0

Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA  TDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK
Sbjct: 1   MALGTDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

BLAST of Carg14095 vs. NCBI nr
Match: XP_008443871.1 (PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_008443872.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 8.2e-53
Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 0

Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA E D SGGS+EVHTDVL+E RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           A RA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPL+LPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

BLAST of Carg14095 vs. NCBI nr
Match: XP_022134674.1 (uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncharacterized protein LOC111006886 [Momordica charantia])

HSP 1 Score: 214.2 bits (544), Expect = 2.4e-52
Identity = 103/114 (90.35%), Postives = 106/114 (92.98%), Query Frame = 0

Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA E D SGG +EVH+DVLA  RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           A RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPTS
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114

BLAST of Carg14095 vs. TAIR10
Match: AT5G58005.1 (Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-38
Identity = 72/113 (63.72%), Postives = 85/113 (75.22%), Query Frame = 0

Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA +T  S    +VH DVL + R ACY      YAC+EKES KKPTEIA+VGLLYP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYXXXXXXYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPT 114
            SR +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+ LPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

BLAST of Carg14095 vs. TrEMBL
Match: tr|A0A1S3B9T5|A0A1S3B9T5_CUCME (uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.4e-53
Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 0

Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA E D SGGS+EVHTDVL+E RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           A RA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPL+LPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

BLAST of Carg14095 vs. TrEMBL
Match: tr|A0A0A0LTX1|A0A0A0LTX1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 6.0e-52
Identity = 99/114 (86.84%), Postives = 107/114 (93.86%), Query Frame = 0

Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA E D SGGS+EVHTDVL+E RQACYKARDAFYAC+EKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           A RA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPL+LPQPYTFKPT+
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

BLAST of Carg14095 vs. TrEMBL
Match: tr|A0A2P5F3B6|A0A2P5F3B6_9ROSA (Cytochrome c oxidase, subunit VIb OS=Trema orientalis OX=63057 GN=TorRG33x02_119190 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 8.4e-46
Identity = 89/114 (78.07%), Postives = 100/114 (87.72%), Query Frame = 0

Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           M+ E        E+HTDVL+E RQACYKARDAFYAC+EKES+KKPTEIASVGLLYP+ECK
Sbjct: 1   MSKEAYVPRNPNEIHTDVLSEARQACYKARDAFYACLEKESEKKPTEIASVGLLYPSECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           ASRA+FVKLCR SWV HFDR++C+N RV RLLDDKDSRRGPLVLPQPYTFKPT+
Sbjct: 61  ASRAKFVKLCRGSWVNHFDRQYCRNRRVHRLLDDKDSRRGPLVLPQPYTFKPTT 114

BLAST of Carg14095 vs. TrEMBL
Match: tr|A0A2P5C0P1|A0A2P5C0P1_PARAD (Cytochrome c oxidase, subunit VIb OS=Parasponia andersonii OX=3476 GN=PanWU01x14_194340 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.9e-45
Identity = 88/114 (77.19%), Postives = 100/114 (87.72%), Query Frame = 0

Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           M+ E        E+HTDVL+E RQACYKARDAFYAC+EKES+KKPTEIASVGLLYP+EC+
Sbjct: 1   MSKEAYAPRNPNEIHTDVLSEARQACYKARDAFYACLEKESEKKPTEIASVGLLYPSECE 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           ASRA+FVKLCR SWV HFDR++C+N RV RLLDDKDSRRGPLVLPQPYTFKPT+
Sbjct: 61  ASRAKFVKLCRGSWVNHFDRQYCRNRRVHRLLDDKDSRRGPLVLPQPYTFKPTT 114

BLAST of Carg14095 vs. TrEMBL
Match: tr|W9RFM4|W9RFM4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002942 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 7.1e-45
Identity = 88/114 (77.19%), Postives = 100/114 (87.72%), Query Frame = 0

Query: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           M+ ET  S    EVHTDVL+E RQACYKARDAFYAC+EKES KKPTEI  VGLLYP+EC 
Sbjct: 1   MSKETYASRNPTEVHTDVLSEARQACYKARDAFYACLEKESVKKPTEITPVGLLYPSECN 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 115
           ASRAE+VKLCR+SWV HFDR++C+N RVQRLLDD+D+RRGPLVLPQPYTFKPT+
Sbjct: 61  ASRAEYVKLCRSSWVNHFDRQYCRNIRVQRLLDDRDTRRGPLVLPQPYTFKPTN 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022926034.19.0e-60100.00cytochrome c oxidase assembly factor 6 [Cucurbita moschata][more]
XP_022973432.11.3e-5899.12cytochrome c oxidase assembly factor 6 [Cucurbita maxima][more]
XP_023529846.18.4e-5898.25cytochrome c oxidase assembly factor 6 [Cucurbita pepo subsp. pepo][more]
XP_008443871.18.2e-5388.60PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_00... [more]
XP_022134674.12.4e-5290.35uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncha... [more]
Match NameE-valueIdentityDescription
AT5G58005.11.4e-3863.72Cytochrome c oxidase, subunit Vib family protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3B9T5|A0A1S3B9T5_CUCME5.4e-5388.60uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LTX1|A0A0A0LTX1_CUCSA6.0e-5286.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1[more]
tr|A0A2P5F3B6|A0A2P5F3B6_9ROSA8.4e-4678.07Cytochrome c oxidase, subunit VIb OS=Trema orientalis OX=63057 GN=TorRG33x02_119... [more]
tr|A0A2P5C0P1|A0A2P5C0P1_PARAD1.9e-4577.19Cytochrome c oxidase, subunit VIb OS=Parasponia andersonii OX=3476 GN=PanWU01x14... [more]
tr|W9RFM4|W9RFM4_9ROSA7.1e-4577.19Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002942 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR036549Cyt_c_oxidase_su6B_sf
IPR003213Cyt_c_oxidase_su6B
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14095-RACarg14095-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003213Cytochrome c oxidase, subunit VIbPFAMPF02297COX6Bcoord: 23..92
e-value: 5.0E-18
score: 65.0
IPR003213Cytochrome c oxidase, subunit VIbPANTHERPTHR11387CYTOCHROME C OXIDASE POLYPEPTIDE VIBcoord: 22..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..114
NoneNo IPR availablePANTHERPTHR11387:SF20CYTOCHROME C OXIDASE ASSEMBLY FACTOR 6 HOMOLOGcoord: 22..112
IPR036549Cytochrome c oxidase, subunit VIb superfamilySUPERFAMILYSSF47694Cytochrome c oxidase subunit hcoord: 23..82

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg14095Carg09985Silver-seed gourdcarcarB151