CsGy1G017390 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G017390
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Chlororespiratory reduction 6
Location	Chr1 : 15619809 .. 15622142 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGGATTGAAAGCTGCATGATTTGGCATTACAAATGAAGCCCAAAAGACTCATTTTTCTACGATTTATTGAACAAGCGGTTAGAGTTTCAAAGATTAGCACAAAACCCATTTAAGACTTTTTAGCTTTGTCTTCCATACAATTATCTCTAATTTAGAAGAAACAAATGAAGTCAAAGTAAAACTTGAAACCAAATTGGATAAGTAAAACAAGATGGAGGAAGAAGATAAACCAGACATTACAACTCCTACGCCTCCCCATCATTTGGGATTGTTTCCATGTCCACTCCAACCATTAAACCTTCATTTCCACTTTCTCCTTCCTTTAACCATCCATCTCGCTCACCCATTTCATGGAGCTTTTCCAGACCCATTTCAGATTCTTCCCCTTCTTCCCTTATTTCCACTTCCTCTCGCCATCGACGACAACTATCTGCCTCGGTTTCCTTCAATCCTTCCGGAAACTTTGACCTTTCTTTTCAAGATGATGACGATGGTAACTCCTCAAATTTCTGCTGTTTCAATTTCTGAATTTGATTTGCACCCATTTCGATTTATGCATTCCCGAATTAGTTTAAATGAATTGTGAAGGTTGGGGAATTTTTTTGGTTTCTATCCATTTCCATTGAATGAAATTGTTTATGTCGACTTTTTGTAGTTAGTCATTCAAAGAGAATTGCTCTCTTCTTGATGAATAATGAAATTCAAGTTCATTGCTGTATTTTGGAGAAATAGAGAACATATACTGTTAGGGAAGATTTTACTGATGTTATCTAGTTCTTTCTTTCCCTTGAAATGTTATGGAAACCAAAGAAAAGGAAGAACGATTGTGGGGGTTATATATATGTGGGTGTGTATATATATTATATGTATATGTAGGGAGTGTTTAGATGATATGATATTCAACTTGCATGCACCCATTAGATTAAACTTTTGGTCAACCATTGTTTACAATGGTATCGTAGCTTCTCCAACTAATATTGATATCTAACTATTGTGTCTTCAGTCCTGTTTCAAACTCACAAATGATTGGAGTTTTAAATGATACAATATTTGTTAAATTTGATAATATGGGTTCTATCTTAAAATGAATCGTCAATAAGAGGAGTAACTCATCTATCTTGTATGAAGTGTGAATTTTTTTGGTTTTTGCAACGTGCGACTTTCAACTTCTCCAACAATATTAAATTTGTTTTCACTTAAGTTCTTGCATCAATTGGATGTTTAAGAGGAGTTCTTGAAATTTTGATGGGTCTTAACTGTTTGTTAAGAACAGATTCTTCTAAAGTTGCACCTCCAATGCCACCCACAGAAGGTCGATTTGACGTGGTTATAGATAACGATGCAATTCGTTGTCTAGACTTATCCTCATTTCAGACAACAACTGGAATAGTTTCACCTTTAGCTAGTAAGTTTTGGTTGGTTGGTATGTTTATGTCATTGTTTTGAAATTAGTTCTTTGATCGGATCCCTGATGAGTTCTCTTTCCTAGTATTGTTACAGCTGAGCCAAAACAATTCCTTGAACGTACAATTGGTTTTACCATTAACTATACTCGAGAAGATCCTTACGATCGACGTGAATTATCCGAATACCCTGACATAAGGCTGTGGTTTGTGAGACTTGATTCAGTCTATCCGTGGCTACCTGTTCTGCTGGACTGGAGAGCGGGAGAGCTCGCACGGTATGCAGCAATGCTCGTTCCTCACCAGGTGATGAATTGTTATAAAAATGTAGATATTAAGTAGTGTGCAGAGACTTATTTTTGGGATATTTTTGGTTGCAGATAAGTATGAGAATGGGAATTGTGTTCAATCCTGAGGCTTTGGAGCTGTTTGTGATGAAGAAAGTTTTTATAGTGTACTCATGGTTGAAGCAACATGACATTCCAAAGCCAAGATTGAAAGCAGCTAATATGGCTAGGATGCTTGGGTTTGGAATTGGAGATGAACTTTTTGACTTGATAGATCAACATCCAGTTGCCCCACCATGAAACATGATCTCGAAGTGCTGGGTGGATACTATCCATTCGAGAACTGGTATTATCTTCTAAAATTGTAATGATAGTAAATCTTTCAAAATCTTCACAGCTTATACTGTTGATGAATGAGTAATTTAGTTATGAAGTCATAAGAAAAATGTTTGTTAAAAAGAAAATAATTTATATGTTCCATCTCTTTAAAATTACGTGCATTTTGGGGTTCTTTTTACCCATTTGATCTTGTTGTTATCGTTTTCTTTTCTCTTTTGAGCACTTATCAAATATACTTTGGTTATAGATAATTATAGAACATCGTAGGATGTGATTGCAGCCGAAGCCACGACCTTCCCTTTT

mRNA sequence

GTTGGATTGAAAGCTGCATGATTTGGCATTACAAATGAAGCCCAAAAGACTCATTTTTCTACGATTTATTGAACAAGCGGTTAGAGTTTCAAAGATTAGCACAAAACCCATTTAAGACTTTTTAGCTTTGTCTTCCATACAATTATCTCTAATTTAGAAGAAACAAATGAAGTCAAAGTAAAACTTGAAACCAAATTGGATAAGTAAAACAAGATGGAGGAAGAAGATAAACCAGACATTACAACTCCTACGCCTCCCCATCATTTGGGATTGTTTCCATGTCCACTCCAACCATTAAACCTTCATTTCCACTTTCTCCTTCCTTTAACCATCCATCTCGCTCACCCATTTCATGGAGCTTTTCCAGACCCATTTCAGATTCTTCCCCTTCTTCCCTTATTTCCACTTCCTCTCGCCATCGACGACAACTATCTGCCTCGGTTTCCTTCAATCCTTCCGGAAACTTTGACCTTTCTTTTCAAGATGATGACGATGATTCTTCTAAAGTTGCACCTCCAATGCCACCCACAGAAGGTCGATTTGACGTGGTTATAGATAACGATGCAATTCGTTGTCTAGACTTATCCTCATTTCAGACAACAACTGGAATAGTTTCACCTTTAGCTACTGAGCCAAAACAATTCCTTGAACGTACAATTGGTTTTACCATTAACTATACTCGAGAAGATCCTTACGATCGACGTGAATTATCCGAATACCCTGACATAAGGCTGTGGTTTGTGAGACTTGATTCAGTCTATCCGTGGCTACCTGTTCTGCTGGACTGGAGAGCGGGAGAGCTCGCACGGTATGCAGCAATGCTCGTTCCTCACCAGATAAGTATGAGAATGGGAATTGTGTTCAATCCTGAGGCTTTGGAGCTGTTTGTGATGAAGAAAGTTTTTATAGTGTACTCATGGTTGAAGCAACATGACATTCCAAAGCCAAGATTGAAAGCAGCTAATATGGCTAGGATGCTTGGGTTTGGAATTGGAGATGAACTTTTTGACTTGATAGATCAACATCCAGTTGCCCCACCATGAAACATGATCTCGAAGTGCTGGGTGGATACTATCCATTCGAGAACTGGTATTATCTTCTAAAATTGTAATGATAGTAAATCTTTCAAAATCTTCACAGCTTATACTGTTGATGAATGAGTAATTTAGTTATGAAGTCATAAGAAAAATGTTTGTTAAAAAGAAAATAATTTATATGTTCCATCTCTTTAAAATTACGTGCATTTTGGGGTTCTTTTTACCCATTTGATCTTGTTGTTATCGTTTTCTTTTCTCTTTTGAGCACTTATCAAATATACTTTGGTTATAGATAATTATAGAACATCGTAGGATGTGATTGCAGCCGAAGCCACGACCTTCCCTTTT

Coding sequence (CDS)

ATGTCCACTCCAACCATTAAACCTTCATTTCCACTTTCTCCTTCCTTTAACCATCCATCTCGCTCACCCATTTCATGGAGCTTTTCCAGACCCATTTCAGATTCTTCCCCTTCTTCCCTTATTTCCACTTCCTCTCGCCATCGACGACAACTATCTGCCTCGGTTTCCTTCAATCCTTCCGGAAACTTTGACCTTTCTTTTCAAGATGATGACGATGATTCTTCTAAAGTTGCACCTCCAATGCCACCCACAGAAGGTCGATTTGACGTGGTTATAGATAACGATGCAATTCGTTGTCTAGACTTATCCTCATTTCAGACAACAACTGGAATAGTTTCACCTTTAGCTACTGAGCCAAAACAATTCCTTGAACGTACAATTGGTTTTACCATTAACTATACTCGAGAAGATCCTTACGATCGACGTGAATTATCCGAATACCCTGACATAAGGCTGTGGTTTGTGAGACTTGATTCAGTCTATCCGTGGCTACCTGTTCTGCTGGACTGGAGAGCGGGAGAGCTCGCACGGTATGCAGCAATGCTCGTTCCTCACCAGATAAGTATGAGAATGGGAATTGTGTTCAATCCTGAGGCTTTGGAGCTGTTTGTGATGAAGAAAGTTTTTATAGTGTACTCATGGTTGAAGCAACATGACATTCCAAAGCCAAGATTGAAAGCAGCTAATATGGCTAGGATGCTTGGGTTTGGAATTGGAGATGAACTTTTTGACTTGATAGATCAACATCCAGTTGCCCCACCATGA

Protein sequence

MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPSGNFDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPKQFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAAMLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGDELFDLIDQHPVAPP

Homology

[Close]

BLAST of CsGy1G017390 vs. NCBI nr
Match: XP_011655753.1 (PREDICTED: uncharacterized protein LOC101216098 [Cucumis sativus] >KGN65205.1 hypothetical protein Csa_1G264560 [Cucumis sativus])

HSP 1 Score: 489.6 bits (1259), Expect = 6.5e-135
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0


Query: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60
           MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS
Sbjct: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60

Query: 61  GNFDLSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120
           GNFDLSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK
Sbjct: 61  GNFDLSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120

Query: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180
           QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 254

[Close]

BLAST of CsGy1G017390 vs. NCBI nr
Match: XP_008443914.1 (PREDICTED: protein CHLORORESPIRATORY REDUCTION 6, chloroplastic [Cucumis melo])

HSP 1 Score: 466.5 bits (1199), Expect = 5.9e-128
Identity = 233/254 (91.73%), Postives = 235/254 (92.52%), Query Frame = 0


Query: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60
           MSTPTIKP  PLSPSFNHPSRSPISWSFSRPIS SSP   ISTSSRHR QLSASV+FNPS
Sbjct: 1   MSTPTIKPPLPLSPSFNHPSRSPISWSFSRPISPSSP---ISTSSRHRPQLSASVAFNPS 60

Query: 61  GNFDLSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120
           GNFDLSFQD           MPPTEGRFDVVIDNDAIRCLDLSSFQ TTGI+SPLATEPK
Sbjct: 61  GNFDLSFQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQKTTGIISPLATEPK 120

Query: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180
           QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 251

[Close]

BLAST of CsGy1G017390 vs. NCBI nr
Match: XP_022921932.1 (protein CHLORORESPIRATORY REDUCTION 6, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 447.6 bits (1150), Expect = 2.8e-122
Identity = 223/254 (87.80%), Postives = 227/254 (89.37%), Query Frame = 0


Query: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60
           MSTP IKP  PLSPSFNHPSRSPISWSF RPISDSSP   I TSSR RRQ+SASV+FNPS
Sbjct: 1   MSTPAIKPLLPLSPSFNHPSRSPISWSFCRPISDSSPFCSIFTSSRQRRQVSASVAFNPS 60

Query: 61  GNFDLSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120
           G FDLS QD           MPPTEGRFDVVIDND IR LDLSSFQ TTGI+SPLATEPK
Sbjct: 61  GKFDLSLQDDEDDSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPK 120

Query: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180
           QFLERTIGFTINYTREDP+DRRELSEYPDIRLWFVRLDS YPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLK ANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 254

[Close]

BLAST of CsGy1G017390 vs. NCBI nr
Match: XP_022987841.1 (protein CHLORORESPIRATORY REDUCTION 6, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 445.3 bits (1144), Expect = 1.4e-121
Identity = 221/254 (87.01%), Postives = 227/254 (89.37%), Query Frame = 0


Query: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60
           MSTP IKP  PLSPSFNHPSRSPISWSF RPISDSSPS  I +SSR RRQ+SASV+FNPS
Sbjct: 1   MSTPAIKPLLPLSPSFNHPSRSPISWSFCRPISDSSPSCSIFSSSRQRRQVSASVAFNPS 60

Query: 61  GNFDLSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120
           G FDLS QD           MPPTEGRFDVVIDND IR LDLSSFQ TTGI+SPLATEPK
Sbjct: 61  GKFDLSLQDDEDDSPKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPK 120

Query: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180
           QFLERTIGFTINYTREDP+DRRELSEYPDIRLWFVRLDS YPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLK+HDIPKPRLK ANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKKHDIPKPRLKTANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPV PP
Sbjct: 241 ELFDLIDQHPVVPP 254

[Close]

BLAST of CsGy1G017390 vs. NCBI nr
Match: XP_023515428.1 (protein CHLORORESPIRATORY REDUCTION 6, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 436.4 bits (1121), Expect = 6.6e-119
Identity = 219/254 (86.22%), Postives = 223/254 (87.80%), Query Frame = 0


Query: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60
           MSTP IKP  PLSPS  HPSRSPISWSF RP SDSS    I TSSR RRQ+SASV+FNPS
Sbjct: 1   MSTPAIKPLLPLSPSSIHPSRSPISWSFCRPFSDSSSFCSIFTSSRQRRQVSASVAFNPS 60

Query: 61  GNFDLSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120
           G FDLS QD           MPPTEGRFDVVIDND IR LDLSSFQ TTGI+SPLATEPK
Sbjct: 61  GKFDLSLQDDEDDSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPK 120

Query: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180
           QFLERTIGFTINYTREDP+DRRELSEYPDIRLWFVRLDS YPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLK ANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 254

[Close]

BLAST of CsGy1G017390 vs. TAIR10
Match: AT2G47910.1 (chlororespiratory reduction 6)

HSP 1 Score: 300.8 bits (769), Expect = 7.8e-82
Identity = 143/207 (69.08%), Postives = 167/207 (80.68%), Query Frame = 0


Query: 46  RHRRQLSASVSFNPSGNFDLSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSF 105
           R    ++ SV+FNPSGNFD+S  +           MPPT GR++VVIDND+I  LDLS F
Sbjct: 39  RRAEDVAVSVAFNPSGNFDISAFENDQDSDKVEPPMPPTTGRYEVVIDNDSIGRLDLSPF 98

Query: 106 QTTTGIVSP---LATEPKQFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYP 165
           Q   GI SP      EPK++L+RTIGFTINY REDP D RELSEYPD+RLWFVRLD++YP
Sbjct: 99  QRAIGITSPDDFGVAEPKRYLDRTIGFTINYKREDPGDPRELSEYPDVRLWFVRLDAMYP 158

Query: 166 WLPVLLDWRAGELARYAAMLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPK 225
           WLP+LLDWRAGELARYAAMLVPHQ+S+RMG+VFNPEALELFVM KVF+VY WLK+H +PK
Sbjct: 159 WLPLLLDWRAGELARYAAMLVPHQMSLRMGVVFNPEALELFVMNKVFVVYPWLKRHGVPK 218

Query: 226 PRLKAANMARMLGFGIGDELFDLIDQH 250
           PRLK ++MARMLGFGIGDELFDLID +
Sbjct: 219 PRLKTSDMARMLGFGIGDELFDLIDHN 245

[Close]

BLAST of CsGy1G017390 vs. Swiss-Prot
Match: sp|O82258|CRR6_ARATH (Protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR6 PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.4e-80
Identity = 143/207 (69.08%), Postives = 167/207 (80.68%), Query Frame = 0


Query: 46  RHRRQLSASVSFNPSGNFDLSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSF 105
           R    ++ SV+FNPSGNFD+S  +           MPPT GR++VVIDND+I  LDLS F
Sbjct: 39  RRAEDVAVSVAFNPSGNFDISAFENDQDSDKVEPPMPPTTGRYEVVIDNDSIGRLDLSPF 98

Query: 106 QTTTGIVSP---LATEPKQFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYP 165
           Q   GI SP      EPK++L+RTIGFTINY REDP D RELSEYPD+RLWFVRLD++YP
Sbjct: 99  QRAIGITSPDDFGVAEPKRYLDRTIGFTINYKREDPGDPRELSEYPDVRLWFVRLDAMYP 158

Query: 166 WLPVLLDWRAGELARYAAMLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPK 225
           WLP+LLDWRAGELARYAAMLVPHQ+S+RMG+VFNPEALELFVM KVF+VY WLK+H +PK
Sbjct: 159 WLPLLLDWRAGELARYAAMLVPHQMSLRMGVVFNPEALELFVMNKVFVVYPWLKRHGVPK 218

Query: 226 PRLKAANMARMLGFGIGDELFDLIDQH 250
           PRLK ++MARMLGFGIGDELFDLID +
Sbjct: 219 PRLKTSDMARMLGFGIGDELFDLIDHN 245

[Close]

BLAST of CsGy1G017390 vs. TrEMBL
Match: tr|A0A0A0LTF0|A0A0A0LTF0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264560 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 4.3e-135
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0


Query: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60
           MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS
Sbjct: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60

Query: 61  GNFDLSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120
           GNFDLSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK
Sbjct: 61  GNFDLSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120

Query: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180
           QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 254

[Close]

BLAST of CsGy1G017390 vs. TrEMBL
Match: tr|A0A1S3B982|A0A1S3B982_CUCME (protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487393 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 3.9e-128
Identity = 233/254 (91.73%), Postives = 235/254 (92.52%), Query Frame = 0


Query: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60
           MSTPTIKP  PLSPSFNHPSRSPISWSFSRPIS SSP   ISTSSRHR QLSASV+FNPS
Sbjct: 1   MSTPTIKPPLPLSPSFNHPSRSPISWSFSRPISPSSP---ISTSSRHRPQLSASVAFNPS 60

Query: 61  GNFDLSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120
           GNFDLSFQD           MPPTEGRFDVVIDNDAIRCLDLSSFQ TTGI+SPLATEPK
Sbjct: 61  GNFDLSFQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQKTTGIISPLATEPK 120

Query: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180
           QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 251

[Close]

BLAST of CsGy1G017390 vs. TrEMBL
Match: tr|A5CBF1|A5CBF1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004173 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 4.0e-96
Identity = 178/251 (70.92%), Postives = 200/251 (79.68%), Query Frame = 0


Query: 5   TIKPSFPL--SPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPSGN 64
           TIKP  PL  SPS  H   SP  W F +P  DS+ S  +S  +R  R ++ SV+FNPSGN
Sbjct: 3   TIKPLLPLSPSPSLKHAIPSPSPWIFCKPTFDSTVSLSMSHLNRLPRLVAVSVAFNPSGN 62

Query: 65  FDLSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPKQF 124
           FDLS  D           MPPTEGR +VVIDND IR LDLS F T TGI SP + EPK+F
Sbjct: 63  FDLSIYDDEDDSTKVSPPMPPTEGRIEVVIDNDVIRRLDLSPFHTATGITSPSSAEPKEF 122

Query: 125 LERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAAML 184
           LERTIGFTINYTREDP+D RELSE+PDIRLWFVRLD+ YPWLPV+LDWRAGELARY AML
Sbjct: 123 LERTIGFTINYTREDPHDPRELSEFPDIRLWFVRLDATYPWLPVVLDWRAGELARYTAML 182

Query: 185 VPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGDEL 244
           VPHQ++MRMG+VFNPEALELF+MKKVF+VYSWLKQH IPKPRLK ++MARMLGFGIGDEL
Sbjct: 183 VPHQMNMRMGVVFNPEALELFIMKKVFVVYSWLKQHKIPKPRLKTSDMARMLGFGIGDEL 242

Query: 245 FDLIDQHPVAP 254
           FDLIDQHP+AP
Sbjct: 243 FDLIDQHPLAP 253

[Close]

BLAST of CsGy1G017390 vs. TrEMBL
Match: tr|A0A2I4DPB6|A0A2I4DPB6_9ROSI (protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Juglans regia OX=51240 GN=LOC108982145 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 6.7e-96
Identity = 178/249 (71.49%), Postives = 201/249 (80.72%), Query Frame = 0


Query: 5   TIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPSGNFD 64
           +IKP  PLSPS N    S   W   +PISD      IS S+R RR+++ASVSFNPSGNFD
Sbjct: 4   SIKPILPLSPSLNQTISSSTPWMSCKPISDPMAFLHISHSTRPRREVAASVSFNPSGNFD 63

Query: 65  LSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPKQFLE 124
           LS  D           MPP+EGRF++VIDND IR LDLS FQ TTGI SPL+ EP++FLE
Sbjct: 64  LSLYDDEEDASKPSPPMPPSEGRFEIVIDNDIIRRLDLSPFQATTGINSPLSVEPQEFLE 123

Query: 125 RTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAAMLVP 184
           R IGF INYTREDP D RELSE+PDIRLWFVRLD+ YPWLPVLLDWRAGELARYAAMLVP
Sbjct: 124 RKIGFAINYTREDPRDPRELSEFPDIRLWFVRLDATYPWLPVLLDWRAGELARYAAMLVP 183

Query: 185 HQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGDELFD 244
           HQ++MRMGIVFNPEALELF+MKKVFIVYSWLK+HDIPKPRLK ++MARMLGF IGDELFD
Sbjct: 184 HQMNMRMGIVFNPEALELFIMKKVFIVYSWLKRHDIPKPRLKTSDMARMLGFIIGDELFD 243

Query: 245 LIDQHPVAP 254
           LI++HP+ P
Sbjct: 244 LIEEHPLDP 252

[Close]

BLAST of CsGy1G017390 vs. TrEMBL
Match: tr|A0A2N9FKZ0|A0A2N9FKZ0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19329 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 9.7e-95
Identity = 176/249 (70.68%), Postives = 200/249 (80.32%), Query Frame = 0


Query: 5   TIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPSGNFD 64
           TIKP  PL PS      SP  W   +PISD   S  I  S+R R Q++ SV+FNPSG FD
Sbjct: 4   TIKPILPLCPSLKQTLSSPTPWISCKPISDPIASLQIYHSTRPRGQVAVSVAFNPSGKFD 63

Query: 65  LSFQDXXXXXXXXXXXMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPKQFLE 124
           LS  D           MPPT+ RFDVVI+ND+I  LD+S FQ TTGI SPL+ EP++FLE
Sbjct: 64  LSLDD-EEDSSKLEPPMPPTQDRFDVVIENDSIGRLDISPFQATTGITSPLSAEPRKFLE 123

Query: 125 RTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAAMLVP 184
           RTIGFTINYTREDPYD REL+E+PDIRLWFVRLD+ YPWLPVLLDWRAGELARYAAMLVP
Sbjct: 124 RTIGFTINYTREDPYDPRELTEFPDIRLWFVRLDATYPWLPVLLDWRAGELARYAAMLVP 183

Query: 185 HQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGDELFD 244
           HQ++M+MG+VFNPEALELFVMKKVFIVYSWLKQHDIPKPRLK ++MARMLGFGIGDELF+
Sbjct: 184 HQMNMKMGVVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTSDMARMLGFGIGDELFN 243

Query: 245 LIDQHPVAP 254
           LID+HP+ P
Sbjct: 244 LIDKHPLDP 251

The following BLAST results are available for this feature:

BLAST of CsGy1G017390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655753.1	6.5e-135	100.00	PREDICTED: uncharacterized protein LOC101216098 [Cucumis sativus] >KGN65205.1 hy...	[more]
XP_008443914.1	5.9e-128	91.73	PREDICTED: protein CHLORORESPIRATORY REDUCTION 6, chloroplastic [Cucumis melo]	[more]
XP_022921932.1	2.8e-122	87.80	protein CHLORORESPIRATORY REDUCTION 6, chloroplastic isoform X1 [Cucurbita mosch...	[more]
XP_022987841.1	1.4e-121	87.01	protein CHLORORESPIRATORY REDUCTION 6, chloroplastic isoform X1 [Cucurbita maxim...	[more]
XP_023515428.1	6.6e-119	86.22	protein CHLORORESPIRATORY REDUCTION 6, chloroplastic [Cucurbita pepo subsp. pepo...	[more]

BLAST of CsGy1G017390 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47910.1	7.8e-82	69.08	chlororespiratory reduction 6	[more]

BLAST of CsGy1G017390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82258\|CRR6_ARATH	1.4e-80	69.08	Protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Arabidopsis thaliana OX=...	[more]

BLAST of CsGy1G017390 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTF0\|A0A0A0LTF0_CUCSA	4.3e-135	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264560 PE=4 SV=1	[more]
tr\|A0A1S3B982\|A0A1S3B982_CUCME	3.9e-128	91.73	protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A5CBF1\|A5CBF1_VITVI	4.0e-96	70.92	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004173 PE=4 SV=1	[more]
tr\|A0A2I4DPB6\|A0A2I4DPB6_9ROSI	6.7e-96	71.49	protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Juglans regia OX=51240 G...	[more]
tr\|A0A2N9FKZ0\|A0A2N9FKZ0_FAGSY	9.7e-95	70.68	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19329 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014946	CRR6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G017390.1	CsGy1G017390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014946	Protein chlororespiratory reduction 6	PFAM	PF08847	Crr6	coord: 92..245 e-value: 5.4E-60 score: 201.3
IPR014946	Protein chlororespiratory reduction 6	PANTHER	PTHR35724	FAMILY NOT NAMED	coord: 38..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR35724:SF1	PROTEIN CHLORORESPIRATORY REDUCTION 6, CHLOROPLASTIC	coord: 38..253

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G017390	Cla018688	Watermelon (97103) v1	cgybwmB079
CsGy1G017390	Csa1G264560	Cucumber (Chinese Long) v2	cgybcuB003
CsGy1G017390	MELO3C010270	Melon (DHL92) v3.5.1	cgybmeB049
CsGy1G017390	ClCG06G011950	Watermelon (Charleston Gray)	cgybwcgB063
CsGy1G017390	CSPI01G17180	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G017390	CmaCh10G005010	Cucurbita maxima (Rimu)	cgybcmaB014
CsGy1G017390	CmoCh10G005350	Cucurbita moschata (Rifu)	cgybcmoB014
CsGy1G017390	Lsi06G010630	Bottle gourd (USVL1VR-Ls)	cgyblsiB070
CsGy1G017390	Cp4.1LG18g05250	Cucurbita pepo (Zucchini)	cgybcpeB040
CsGy1G017390	MELO3C010270.2	Melon (DHL92) v3.6.1	cgybmedB045
CsGy1G017390	CsaV3_1G028410	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G017390	Cla97C06G121120	Watermelon (97103) v2	cgybwmbB063
CsGy1G017390	BhiUN297G11	Wax gourd	cgybwgoB010
CsGy1G017390	Carg09961	Silver-seed gourd	carcgybB0132

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G017390	Watermelon (97103) v2	cgybwmbB060
CsGy1G017390	Wax gourd	cgybwgoB093
CsGy1G017390	Cucumber (Gy14) v2	cgybcgybB013
CsGy1G017390	Cucumber (Gy14) v2	cgybcgybB026
CsGy1G017390	Cucurbita maxima (Rimu)	cgybcmaB039
CsGy1G017390	Cucurbita moschata (Rifu)	cgybcmoB037
CsGy1G017390	Cucurbita pepo (Zucchini)	cgybcpeB029
CsGy1G017390	Cucurbita pepo (Zucchini)	cgybcpeB109
CsGy1G017390	Cucurbita pepo (Zucchini)	cgybcpeB148
CsGy1G017390	Cucumber (Chinese Long) v2	cgybcuB020
CsGy1G017390	Cucumber (Chinese Long) v2	cgybcuB030
CsGy1G017390	Bottle gourd (USVL1VR-Ls)	cgyblsiB011
CsGy1G017390	Bottle gourd (USVL1VR-Ls)	cgyblsiB051
CsGy1G017390	Bottle gourd (USVL1VR-Ls)	cgyblsiB063
CsGy1G017390	Melon (DHL92) v3.5.1	cgybmeB072
CsGy1G017390	Melon (DHL92) v3.6.1	cgybmedB061
CsGy1G017390	Melon (DHL92) v3.6.1	cgybmedB068
CsGy1G017390	Watermelon (Charleston Gray)	cgybwcgB061
CsGy1G017390	Watermelon (97103) v1	cgybwmB039
CsGy1G017390	Wild cucumber (PI 183967)	cgybcpiB018
CsGy1G017390	Wild cucumber (PI 183967)	cgybcpiB027
CsGy1G017390	Silver-seed gourd	carcgybB0268
CsGy1G017390	Silver-seed gourd	carcgybB0576
CsGy1G017390	Cucumber (Chinese Long) v3	cgybcucB021
CsGy1G017390	Cucumber (Chinese Long) v3	cgybcucB035