CSPI01G17180 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G17180
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Chlororespiratory reduction 6
Location	Chr1 : 12940289 .. 12942335 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCAAATGAAGAAACAAATGAAGTCAAAGTAAAACTTGAAACCAAATTGGATAAGTAAAACAAGATGGAGGAAGAAGATAAACCAGACATTACAACTTCTACGCCTCCCCATCATTTGGGATTGTTTCCATGTCCACTCCAACCATTAAACCTTCATTTCCACTTTCTCCTTCCTTTAACCATCCATCTCGCTCACCCATTTCATGGAGCTTTTCCAGACCCATTTCAGATTCTTCCCCTTCTTCCCTTATTTCCACTTCCTCTCGCCATCGACGACAACTATCTGCCTCGGTTTCCTTCAATCCTTCCGGAAACTTTGACCTTTCTTTTCAAGATGATGACGATGGTAACTCCTCAAATTTCTGCTGTTTCAATTTCTGAATTTGATTTGTACCCATTTCGATTTATGCATTCCTGAATTAGTTTAAATGAATTGTGAAGGTTGGGGAATTAGTTTCTATCCATTTCCATTGAATGAAATTGTTTATGTCGACTTTTTGTAGTTAGTCATTCAAAGAGAATTGCTCTCTTCTTGATGAATAATGAAATTCAAGTTCATTGCTGTATTTTGGAGAAATAGAGAACATATACTGTTAGGGAAGATTTTACTGATGTTATCTAGTTCTTTCTTTCCCTTGAAATGTTATGGAAACCAAAGAAAAGGAAGAACGATTGTGGGGGTTATATATATGTGGGTGTGTATATATATTATATGTATATGTAGGGAGTGTTTAGATGATATGATATTCAACTTGCATGCACCCATTAGATTAAACTTTTGGTCAACCATTGTTTACAATGGTATCGTAGCTTCTCCAACTAATATTGATATCTAATTATTGCGTCTTCAGTCCTGTTTCAAACTCACAAATGATTGGAGTTTTAAATGATACGATATTTGTTAAATTTGATAATATGGGTTCTATCTTAAAATCAATCGTCAATAAGAGGAGTAACTCATCTATCTTGTATGAAGTATGGACTTTTTTTTGTTTTTGCAACGTGGGACTTTCAACTTCTCCAACAATATTAAATTTGTTTTCACTTAAGTTCTTGCATCAATTGGATGTTTAAGAGGAGTTCTTGAAATTTTGATGGGTCTTAACTGTTTGTTAAGAACAGATTCTTCTAAAGTTGCACCACCAATGCCACCCACAGAAGGTCGATTTGACGTGGTTATAGATAACGATGCAATTCGTTGTCTAGACTTATCCTCATTTCAGACAACAACTGGAATAGTTTCACCTTTAGCTAGTAAGTTTTGGGTTGGTTGGTATGTTTATGTCATTGTTTTGAAATTAGTTCTGTGATCGGATCCCTGATGAGTTCTCTTTCCTAGTATTGTTACAGCTGAGCCAAAACAATTCCTTGAACGTACAATTGGTTTTACCATTAACTATACTCGAGAAGATCCTTACGATCGACGTGAATTATCCGAATACCCTGACATAAGGCTGTGGTTTGTGAGACTTGATTCAGTCTATCCGTGGCTACCTGTTCTGCTGGACTGGAGAGCGGGAGAGCTCGCACGGTATGCAGCAATGCTCGTTCCTCACCAGGTGATGAATTGTTATAAAAATGTAGATATTAAGTAGTGTGCAGAGACTTATTTTTGGGATATTTTTGGTTGCAGATAAGTATGAGAATGGGAATTGTGTTCAATCCTGAGGCTTTGGAGCTGTTTGTGATGAAGAAAGTTTTTATAGTGTACTCATGGTTGAAGCAACATGACATTCCAAAGCCAAGATTGAAAGCAGCTAATATGGCTAGGATGCTTGGGTTTGGAATTGGAGATGAACTTTTTGACTTGATAGATCAACATCCAGTTGCCCCACCATGAAACATGATCTCGAAGTGCTGGGTGGATACTATCCATTCGAGAACTGGTATTATCTTCTAAAATTGTAATGATAGTAAATCTTTCAAAATCTTCACAGCTTATACTGTTGATGAATGAGTAATTTAGTTATGAAGTCATAAGAAAAATGTTTGTTAAAAAGAAAATAATTTATATGTTCCATCTCTTTAAAATTACGTGCATTTTGGG

mRNA sequence

ATGTCCACTCCAACCATTAAACCTTCATTTCCACTTTCTCCTTCCTTTAACCATCCATCTCGCTCACCCATTTCATGGAGCTTTTCCAGACCCATTTCAGATTCTTCCCCTTCTTCCCTTATTTCCACTTCCTCTCGCCATCGACGACAACTATCTGCCTCGGTTTCCTTCAATCCTTCCGGAAACTTTGACCTTTCTTTTCAAGATGATGACGATGATTCTTCTAAAGTTGCACCACCAATGCCACCCACAGAAGGTCGATTTGACGTGGTTATAGATAACGATGCAATTCGTTGTCTAGACTTATCCTCATTTCAGACAACAACTGGAATAGTTTCACCTTTAGCTACTGAGCCAAAACAATTCCTTGAACGTACAATTGGTTTTACCATTAACTATACTCGAGAAGATCCTTACGATCGACGTGAATTATCCGAATACCCTGACATAAGGCTGTGGTTTGTGAGACTTGATTCAGTCTATCCGTGGCTACCTGTTCTGCTGGACTGGAGAGCGGGAGAGCTCGCACGGTATGCAGCAATGCTCGTTCCTCACCAGATAAGTATGAGAATGGGAATTGTGTTCAATCCTGAGGCTTTGGAGCTGTTTGTGATGAAGAAAGTTTTTATAGTGTACTCATGGTTGAAGCAACATGACATTCCAAAGCCAAGATTGAAAGCAGCTAATATGGCTAGGATGCTTGGGTTTGGAATTGGAGATGAACTTTTTGACTTGATAGATCAACATCCAGTTGCCCCACCATGA

Coding sequence (CDS)

ATGTCCACTCCAACCATTAAACCTTCATTTCCACTTTCTCCTTCCTTTAACCATCCATCTCGCTCACCCATTTCATGGAGCTTTTCCAGACCCATTTCAGATTCTTCCCCTTCTTCCCTTATTTCCACTTCCTCTCGCCATCGACGACAACTATCTGCCTCGGTTTCCTTCAATCCTTCCGGAAACTTTGACCTTTCTTTTCAAGATGATGACGATGATTCTTCTAAAGTTGCACCACCAATGCCACCCACAGAAGGTCGATTTGACGTGGTTATAGATAACGATGCAATTCGTTGTCTAGACTTATCCTCATTTCAGACAACAACTGGAATAGTTTCACCTTTAGCTACTGAGCCAAAACAATTCCTTGAACGTACAATTGGTTTTACCATTAACTATACTCGAGAAGATCCTTACGATCGACGTGAATTATCCGAATACCCTGACATAAGGCTGTGGTTTGTGAGACTTGATTCAGTCTATCCGTGGCTACCTGTTCTGCTGGACTGGAGAGCGGGAGAGCTCGCACGGTATGCAGCAATGCTCGTTCCTCACCAGATAAGTATGAGAATGGGAATTGTGTTCAATCCTGAGGCTTTGGAGCTGTTTGTGATGAAGAAAGTTTTTATAGTGTACTCATGGTTGAAGCAACATGACATTCCAAAGCCAAGATTGAAAGCAGCTAATATGGCTAGGATGCTTGGGTTTGGAATTGGAGATGAACTTTTTGACTTGATAGATCAACATCCAGTTGCCCCACCATGA

Homology

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BLAST of CSPI01G17180 vs. Swiss-Prot
Match: CRR6_ARATH (Protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Arabidopsis thaliana GN=CRR6 PE=2 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 8.4e-86
Identity = 150/207 (72.46%), Postives = 175/207 (84.54%), Query Frame = 1


Query: 46  RHRRQLSASVSFNPSGNFDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSF 105
           R    ++ SV+FNPSGNFD+S  ++D DS KV PPMPPT GR++VVIDND+I  LDLS F
Sbjct: 39  RRAEDVAVSVAFNPSGNFDISAFENDQDSDKVEPPMPPTTGRYEVVIDNDSIGRLDLSPF 98

Query: 106 QTTTGIVSPL---ATEPKQFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYP 165
           Q   GI SP      EPK++L+RTIGFTINY REDP D RELSEYPD+RLWFVRLD++YP
Sbjct: 99  QRAIGITSPDDFGVAEPKRYLDRTIGFTINYKREDPGDPRELSEYPDVRLWFVRLDAMYP 158

Query: 166 WLPVLLDWRAGELARYAAMLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPK 225
           WLP+LLDWRAGELARYAAMLVPHQ+S+RMG+VFNPEALELFVM KVF+VY WLK+H +PK
Sbjct: 159 WLPLLLDWRAGELARYAAMLVPHQMSLRMGVVFNPEALELFVMNKVFVVYPWLKRHGVPK 218

Query: 226 PRLKAANMARMLGFGIGDELFDLIDQH 250
           PRLK ++MARMLGFGIGDELFDLID +
Sbjct: 219 PRLKTSDMARMLGFGIGDELFDLIDHN 245

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BLAST of CSPI01G17180 vs. TrEMBL
Match: A0A0A0LTF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G264560 PE=4 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 5.2e-143
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 1


Query: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60
           MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS
Sbjct: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60

Query: 61  GNFDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120
           GNFDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK
Sbjct: 61  GNFDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120

Query: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180
           QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 254

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BLAST of CSPI01G17180 vs. TrEMBL
Match: A5CBF1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004173 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 6.9e-103
Identity = 186/251 (74.10%), Postives = 211/251 (84.06%), Query Frame = 1


Query: 5   TIKPSFPLSPS--FNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPSGN 64
           TIKP  PLSPS    H   SP  W F +P  DS+ S  +S  +R  R ++ SV+FNPSGN
Sbjct: 3   TIKPLLPLSPSPSLKHAIPSPSPWIFCKPTFDSTVSLSMSHLNRLPRLVAVSVAFNPSGN 62

Query: 65  FDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPKQF 124
           FDLS  DD+DDS+KV+PPMPPTEGR +VVIDND IR LDLS F T TGI SP + EPK+F
Sbjct: 63  FDLSIYDDEDDSTKVSPPMPPTEGRIEVVIDNDVIRRLDLSPFHTATGITSPSSAEPKEF 122

Query: 125 LERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAAML 184
           LERTIGFTINYTREDP+D RELSE+PDIRLWFVRLD+ YPWLPV+LDWRAGELARY AML
Sbjct: 123 LERTIGFTINYTREDPHDPRELSEFPDIRLWFVRLDATYPWLPVVLDWRAGELARYTAML 182

Query: 185 VPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGDEL 244
           VPHQ++MRMG+VFNPEALELF+MKKVF+VYSWLKQH IPKPRLK ++MARMLGFGIGDEL
Sbjct: 183 VPHQMNMRMGVVFNPEALELFIMKKVFVVYSWLKQHKIPKPRLKTSDMARMLGFGIGDEL 242

Query: 245 FDLIDQHPVAP 254
           FDLIDQHP+AP
Sbjct: 243 FDLIDQHPLAP 253

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BLAST of CSPI01G17180 vs. TrEMBL
Match: A5C0C8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018847 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 2.5e-100
Identity = 184/253 (72.73%), Postives = 208/253 (82.21%), Query Frame = 1


Query: 5   TIKPSFPLSPS----FNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 64
           TIKP  PLSPS       PS SP  W   +P  DS+ S   S  +R  R ++ SV+FNPS
Sbjct: 3   TIKPLLPLSPSPSLKXXIPSPSPSPWIXCKPTFDSTVSLSXSHLNRLPRLVAVSVAFNPS 62

Query: 65  GNFDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 124
           GNFDLS  DD+DDS+KV+PPMPP EGR +V IDND IR LDLS F T TGI SP + EPK
Sbjct: 63  GNFDLSXYDDEDDSTKVSPPMPPXEGRIEVXIDNDVIRRLDLSPFHTATGITSPSSAEPK 122

Query: 125 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 184
           +FLERTIGFTINYTREDP+D RELSE+PDIRLWFVRLD+ YPWLPV+LDWRAGELARY A
Sbjct: 123 EFLERTIGFTINYTREDPHDPRELSEFPDIRLWFVRLDATYPWLPVVLDWRAGELARYTA 182

Query: 185 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 244
           MLVPHQ++MRMG+VFNPEALELF+MKKVF+VYSWLKQH IPKPRLK ++MARMLGFGIGD
Sbjct: 183 MLVPHQMNMRMGVVFNPEALELFIMKKVFVVYSWLKQHKIPKPRLKTSDMARMLGFGIGD 242

Query: 245 ELFDLIDQHPVAP 254
           ELFDLIDQHP+AP
Sbjct: 243 ELFDLIDQHPLAP 255

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BLAST of CSPI01G17180 vs. TrEMBL
Match: A0A0D2Q6R3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G013300 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 2.3e-98
Identity = 179/248 (72.18%), Postives = 206/248 (83.06%), Query Frame = 1


Query: 6   IKPSFPLSPSFNHPSRSPIS--WSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPSGNF 65
           + P  PLSPS  H   +P S  W   +PIS   P+  IS  +R R Q + SVSFNPSGNF
Sbjct: 5   LNPLLPLSPSLKHNINNPSSSPWISFKPISALMPNLPISHFTRQRGQFAPSVSFNPSGNF 64

Query: 66  DLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPKQFL 125
           DLS   D+DDSS+  PPMPP+EGR +V+IDND IR LDLS FQ+ TGI SPL+ EPK++L
Sbjct: 65  DLSLYGDEDDSSQAEPPMPPSEGRLEVIIDNDVIRRLDLSPFQSATGITSPLSAEPKEYL 124

Query: 126 ERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAAMLV 185
           E+TIGFTINYTR+DP+D RELSE+PDIRLWFVRLD+VYPWLPVLLDWRAGELARYAAMLV
Sbjct: 125 EKTIGFTINYTRDDPHDPRELSEFPDIRLWFVRLDAVYPWLPVLLDWRAGELARYAAMLV 184

Query: 186 PHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGDELF 245
           PHQ+SMRMG+VFNPEALELF+MKKVF+VYSWLKQ  IPKPRLK ++MARMLGFGIGDELF
Sbjct: 185 PHQMSMRMGVVFNPEALELFIMKKVFVVYSWLKQQGIPKPRLKTSDMARMLGFGIGDELF 244

Query: 246 DLIDQHPV 252
           DLIDQ P+
Sbjct: 245 DLIDQQPL 252

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BLAST of CSPI01G17180 vs. TrEMBL
Match: A0A061GQ49_THECC (Chlororespiratory reduction 6 OS=Theobroma cacao GN=TCM_038239 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 3.0e-98
Identity = 183/247 (74.09%), Postives = 205/247 (83.00%), Query Frame = 1


Query: 6   IKPSFPLSPSFNH---PSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPSGN 65
           I P  PLSPS  H   PS +P  W   +PIS S  +  I+  SR R Q++ SVSFNPSGN
Sbjct: 5   INPLLPLSPSLKHTIIPSSTP--WISCKPISGSVAALTITRFSRQRGQVAVSVSFNPSGN 64

Query: 66  FDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPKQF 125
           FDLS   D+DDS +V PP+PP+EGRFDVVIDNDAIR LDLS FQ  TGI SP + E K+F
Sbjct: 65  FDLSLYGDEDDSPQVEPPLPPSEGRFDVVIDNDAIRRLDLSPFQIATGITSPSSAEAKEF 124

Query: 126 LERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAAML 185
           LERTIGFTINYTR+DP+D RELSE+PDIRLWFVRLD+ YPWLPVLLDWRAGELARYAAML
Sbjct: 125 LERTIGFTINYTRDDPHDPRELSEFPDIRLWFVRLDATYPWLPVLLDWRAGELARYAAML 184

Query: 186 VPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGDEL 245
           VPHQ+SMRMG+VFNPEALELF+MKKVFIVY+WLKQ  IPKPRLK ++MARMLGFGIGDEL
Sbjct: 185 VPHQMSMRMGVVFNPEALELFIMKKVFIVYAWLKQQGIPKPRLKTSDMARMLGFGIGDEL 244

Query: 246 FDLIDQH 250
           FDLIDQH
Sbjct: 245 FDLIDQH 249

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BLAST of CSPI01G17180 vs. TAIR10
Match: AT2G47910.1 (AT2G47910.1 chlororespiratory reduction 6)

HSP 1 Score: 318.2 bits (814), Expect = 4.7e-87
Identity = 150/207 (72.46%), Postives = 175/207 (84.54%), Query Frame = 1


Query: 46  RHRRQLSASVSFNPSGNFDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSF 105
           R    ++ SV+FNPSGNFD+S  ++D DS KV PPMPPT GR++VVIDND+I  LDLS F
Sbjct: 39  RRAEDVAVSVAFNPSGNFDISAFENDQDSDKVEPPMPPTTGRYEVVIDNDSIGRLDLSPF 98

Query: 106 QTTTGIVSPL---ATEPKQFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYP 165
           Q   GI SP      EPK++L+RTIGFTINY REDP D RELSEYPD+RLWFVRLD++YP
Sbjct: 99  QRAIGITSPDDFGVAEPKRYLDRTIGFTINYKREDPGDPRELSEYPDVRLWFVRLDAMYP 158

Query: 166 WLPVLLDWRAGELARYAAMLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPK 225
           WLP+LLDWRAGELARYAAMLVPHQ+S+RMG+VFNPEALELFVM KVF+VY WLK+H +PK
Sbjct: 159 WLPLLLDWRAGELARYAAMLVPHQMSLRMGVVFNPEALELFVMNKVFVVYPWLKRHGVPK 218

Query: 226 PRLKAANMARMLGFGIGDELFDLIDQH 250
           PRLK ++MARMLGFGIGDELFDLID +
Sbjct: 219 PRLKTSDMARMLGFGIGDELFDLIDHN 245

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BLAST of CSPI01G17180 vs. NCBI nr
Match: gi|778660177|ref|XP_011655753.1| (PREDICTED: uncharacterized protein LOC101216098 [Cucumis sativus])

HSP 1 Score: 515.0 bits (1325), Expect = 7.5e-143
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 1


Query: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60
           MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS
Sbjct: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60

Query: 61  GNFDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120
           GNFDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK
Sbjct: 61  GNFDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120

Query: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180
           QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 254

[Close]

BLAST of CSPI01G17180 vs. NCBI nr
Match: gi|659086399|ref|XP_008443914.1| (PREDICTED: uncharacterized protein LOC103487393 [Cucumis melo])

HSP 1 Score: 490.0 bits (1260), Expect = 2.6e-135
Identity = 243/254 (95.67%), Postives = 245/254 (96.46%), Query Frame = 1


Query: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60
           MSTPTIKP  PLSPSFNHPSRSPISWSFSRPIS SSP   ISTSSRHR QLSASV+FNPS
Sbjct: 1   MSTPTIKPPLPLSPSFNHPSRSPISWSFSRPISPSSP---ISTSSRHRPQLSASVAFNPS 60

Query: 61  GNFDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120
           GNFDLSFQDDDDDS KVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQ TTGI+SPLATEPK
Sbjct: 61  GNFDLSFQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQKTTGIISPLATEPK 120

Query: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180
           QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 251

[Close]

BLAST of CSPI01G17180 vs. NCBI nr
Match: gi|225463047|ref|XP_002268060.1| (PREDICTED: uncharacterized protein LOC100255118 [Vitis vinifera])

HSP 1 Score: 381.7 bits (979), Expect = 9.9e-103
Identity = 186/251 (74.10%), Postives = 211/251 (84.06%), Query Frame = 1


Query: 5   TIKPSFPLSPS--FNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPSGN 64
           TIKP  PLSPS    H   SP  W F +P  DS+ S  +S  +R  R ++ SV+FNPSGN
Sbjct: 3   TIKPLLPLSPSPSLKHAIPSPSPWIFCKPTFDSTVSLSMSHLNRLPRLVAVSVAFNPSGN 62

Query: 65  FDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPKQF 124
           FDLS  DD+DDS+KV+PPMPPTEGR +VVIDND IR LDLS F T TGI SP + EPK+F
Sbjct: 63  FDLSIYDDEDDSTKVSPPMPPTEGRIEVVIDNDVIRRLDLSPFHTATGITSPSSAEPKEF 122

Query: 125 LERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAAML 184
           LERTIGFTINYTREDP+D RELSE+PDIRLWFVRLD+ YPWLPV+LDWRAGELARY AML
Sbjct: 123 LERTIGFTINYTREDPHDPRELSEFPDIRLWFVRLDATYPWLPVVLDWRAGELARYTAML 182

Query: 185 VPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGDEL 244
           VPHQ++MRMG+VFNPEALELF+MKKVF+VYSWLKQH IPKPRLK ++MARMLGFGIGDEL
Sbjct: 183 VPHQMNMRMGVVFNPEALELFIMKKVFVVYSWLKQHKIPKPRLKTSDMARMLGFGIGDEL 242

Query: 245 FDLIDQHPVAP 254
           FDLIDQHP+AP
Sbjct: 243 FDLIDQHPLAP 253

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BLAST of CSPI01G17180 vs. NCBI nr
Match: gi|147822285|emb|CAN72910.1| (hypothetical protein VITISV_018847 [Vitis vinifera])

HSP 1 Score: 373.6 bits (958), Expect = 2.7e-100
Identity = 184/253 (72.73%), Postives = 208/253 (82.21%), Query Frame = 1


Query: 5   TIKPSFPLSPS----FNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 64
           TIKP  PLSPS       PS SP  W   +P  DS+ S   S  +R  R ++ SV+FNPS
Sbjct: 3   TIKPLLPLSPSPSLKXXIPSPSPSPWIXCKPTFDSTVSLSXSHLNRLPRLVAVSVAFNPS 62

Query: 65  GNFDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 124
           GNFDLS  DD+DDS+KV+PPMPP EGR +V IDND IR LDLS F T TGI SP + EPK
Sbjct: 63  GNFDLSJYDDEDDSTKVSPPMPPXEGRIEVXIDNDVIRRLDLSPFHTATGITSPSSAEPK 122

Query: 125 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 184
           +FLERTIGFTINYTREDP+D RELSE+PDIRLWFVRLD+ YPWLPV+LDWRAGELARY A
Sbjct: 123 EFLERTIGFTINYTREDPHDPRELSEFPDIRLWFVRLDATYPWLPVVLDWRAGELARYTA 182

Query: 185 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 244
           MLVPHQ++MRMG+VFNPEALELF+MKKVF+VYSWLKQH IPKPRLK ++MARMLGFGIGD
Sbjct: 183 MLVPHQMNMRMGVVFNPEALELFIMKKVFVVYSWLKQHKIPKPRLKTSDMARMLGFGIGD 242

Query: 245 ELFDLIDQHPVAP 254
           ELFDLIDQHP+AP
Sbjct: 243 ELFDLIDQHPLAP 255

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BLAST of CSPI01G17180 vs. NCBI nr
Match: gi|823225688|ref|XP_012445652.1| (PREDICTED: uncharacterized protein LOC105769514 [Gossypium raimondii])

HSP 1 Score: 366.7 bits (940), Expect = 3.3e-98
Identity = 179/248 (72.18%), Postives = 206/248 (83.06%), Query Frame = 1


Query: 6   IKPSFPLSPSFNHPSRSPIS--WSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPSGNF 65
           + P  PLSPS  H   +P S  W   +PIS   P+  IS  +R R Q + SVSFNPSGNF
Sbjct: 5   LNPLLPLSPSLKHNINNPSSSPWISFKPISALMPNLPISHFTRQRGQFAPSVSFNPSGNF 64

Query: 66  DLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPKQFL 125
           DLS   D+DDSS+  PPMPP+EGR +V+IDND IR LDLS FQ+ TGI SPL+ EPK++L
Sbjct: 65  DLSLYGDEDDSSQAEPPMPPSEGRLEVIIDNDVIRRLDLSPFQSATGITSPLSAEPKEYL 124

Query: 126 ERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAAMLV 185
           E+TIGFTINYTR+DP+D RELSE+PDIRLWFVRLD+VYPWLPVLLDWRAGELARYAAMLV
Sbjct: 125 EKTIGFTINYTRDDPHDPRELSEFPDIRLWFVRLDAVYPWLPVLLDWRAGELARYAAMLV 184

Query: 186 PHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGDELF 245
           PHQ+SMRMG+VFNPEALELF+MKKVF+VYSWLKQ  IPKPRLK ++MARMLGFGIGDELF
Sbjct: 185 PHQMSMRMGVVFNPEALELFIMKKVFVVYSWLKQQGIPKPRLKTSDMARMLGFGIGDELF 244

Query: 246 DLIDQHPV 252
           DLIDQ P+
Sbjct: 245 DLIDQQPL 252

The following BLAST results are available for this feature:

BLAST of CSPI01G17180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CRR6_ARATH	8.4e-86	72.46	Protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Arabidopsis thaliana GN=...	[more]

BLAST of CSPI01G17180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTF0_CUCSA	5.2e-143	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G264560 PE=4 SV=1	[more]
A5CBF1_VITVI	6.9e-103	74.10	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004173 PE=4 SV=1	[more]
A5C0C8_VITVI	2.5e-100	72.73	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018847 PE=4 SV=1	[more]
A0A0D2Q6R3_GOSRA	2.3e-98	72.18	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G013300 PE=4 SV=1	[more]
A0A061GQ49_THECC	3.0e-98	74.09	Chlororespiratory reduction 6 OS=Theobroma cacao GN=TCM_038239 PE=4 SV=1	[more]

BLAST of CSPI01G17180 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47910.1	4.7e-87	72.46	chlororespiratory reduction 6	[more]

BLAST of CSPI01G17180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778660177\|ref\|XP_011655753.1\|	7.5e-143	100.00	PREDICTED: uncharacterized protein LOC101216098 [Cucumis sativus]	[more]
gi\|659086399\|ref\|XP_008443914.1\|	2.6e-135	95.67	PREDICTED: uncharacterized protein LOC103487393 [Cucumis melo]	[more]
gi\|225463047\|ref\|XP_002268060.1\|	9.9e-103	74.10	PREDICTED: uncharacterized protein LOC100255118 [Vitis vinifera]	[more]
gi\|147822285\|emb\|CAN72910.1\|	2.7e-100	72.73	hypothetical protein VITISV_018847 [Vitis vinifera]	[more]
gi\|823225688\|ref\|XP_012445652.1\|	3.3e-98	72.18	PREDICTED: uncharacterized protein LOC105769514 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014946	CRR6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0010275	NAD(P)H dehydrogenase complex assembly
biological_process	GO:0008150	biological_process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G17180.1	CSPI01G17180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014946	Protein chlororespiratory reduction 6	PFAM	PF08847	DUF1817	coord: 92..245 score: 5.2
None	No IPR available	PANTHER	PTHR35724	FAMILY NOT NAMED	coord: 1..254 score: 2.4E
None	No IPR available	PANTHER	PTHR35724:SF1	SUBFAMILY NOT NAMED	coord: 1..254 score: 2.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G17180	Cla018688	Watermelon (97103) v1	cpiwmB086
CSPI01G17180	Csa1G264560	Cucumber (Chinese Long) v2	cpicuB002
CSPI01G17180	MELO3C010270	Melon (DHL92) v3.5.1	cpimeB057
CSPI01G17180	ClCG06G011950	Watermelon (Charleston Gray)	cpiwcgB071
CSPI01G17180	Lsi06G010630	Bottle gourd (USVL1VR-Ls)	cpilsiB073
CSPI01G17180	MELO3C010270.2	Melon (DHL92) v3.6.1	cpimedB051
CSPI01G17180	CsaV3_1G028410	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G17180	Cla97C06G121120	Watermelon (97103) v2	cpiwmbB068
CSPI01G17180	BhiUN297G11	Wax gourd	cpiwgoB011
CSPI01G17180	Cucsa.350610	Cucumber (Gy14) v1	cgycpiB518
CSPI01G17180	CmaCh10G005010	Cucurbita maxima (Rimu)	cmacpiB059
CSPI01G17180	CmoCh10G005350	Cucurbita moschata (Rifu)	cmocpiB051
CSPI01G17180	Cp4.1LG18g05250	Cucurbita pepo (Zucchini)	cpecpiB351
CSPI01G17180	CsGy1G017390	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G17180	Carg09961	Silver-seed gourd	carcpiB0138

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G17180	Cucurbita maxima (Rimu)	cmacpiB097
CSPI01G17180	Cucurbita maxima (Rimu)	cmacpiB162
CSPI01G17180	Cucurbita maxima (Rimu)	cmacpiB790
CSPI01G17180	Cucurbita moschata (Rifu)	cmocpiB090
CSPI01G17180	Cucurbita moschata (Rifu)	cmocpiB146
CSPI01G17180	Cucurbita moschata (Rifu)	cmocpiB780
CSPI01G17180	Cucumber (Chinese Long) v2	cpicuB021
CSPI01G17180	Melon (DHL92) v3.5.1	cpimeB072
CSPI01G17180	Cucurbita pepo (Zucchini)	cpecpiB089
CSPI01G17180	Cucurbita pepo (Zucchini)	cpecpiB640
CSPI01G17180	Bottle gourd (USVL1VR-Ls)	cpilsiB014
CSPI01G17180	Melon (DHL92) v3.6.1	cpimedB065
CSPI01G17180	Cucumber (Gy14) v2	cgybcpiB054
CSPI01G17180	Silver-seed gourd	carcpiB0285
CSPI01G17180	Silver-seed gourd	carcpiB0608
CSPI01G17180	Silver-seed gourd	carcpiB1108
CSPI01G17180	Cucumber (Chinese Long) v3	cpicucB025
CSPI01G17180	Wax gourd	cpiwgoB099
CSPI01G17180	Wild cucumber (PI 183967)	cpicpiB011
CSPI01G17180	Cucumber (Gy14) v1	cgycpiB186