Cp4.1LG18g05250 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g05250
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	chlororespiratory reduction 6
Location	Cp4.1LG18 : 5985787 .. 5988295 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAGATCAGGGAGAAGATAAACCAGGCGGACGCCTCCGCCTCCCACCGTTGGTATTTTTGCACGCCTTATCGTCGTCTCCATGTCCACTCCCGCCATTAAACCTTTGCTTCCACTTTCTCCTTCCTCTATTCATCCATCTCGCTCGCCCATTTCATGGAGTTTCTGCAGACCTTTCTCAGATTCTTCGTCTTTTTGCTCTATTTTCACCTCTTCTCGGCAGCGACGACAAGTATCCGCCTCGGTTGCCTTTAATCCGTCCGGAAAATTTGATCTCTCTTTGCAAGATGATGAAGATGGTAAATCCTCGAATTTATTCTGATTCAATTTCTGATTTGTTCTGTACCTATTTCGGTTTGTGCATTCCTGAGATAGGGGGATTTATTTTTTCAATCCATGAGCGTTGAATGAATTGCATGGGTGAATTATTTGGTTAGGTTTATAATTGGTCATTCGAATAGAATTGCTCTGTTCTTTGGTTCTTAGCTTCCATTTTCTGGATGATGATACTCGAATTCATTTGCTGCCTTTGGAGAAAAGGAAAATATGAACTATTAGGCAGATTTTACTAACGTTATCTAGTTCTTTGTGTGCCCTTTAATGGTATGGAAACTAGAAAAGGAAGAACAATTGTGGTGGTGATATGTTGGGGAGTTCTTCAAATTTTGATGAGTTTGAACTGATTGTTAAAAACAGATTCTTCTAAAGTTTCACCTCCAATGCCACCTACTGAAGGTCGGTTCGACGTGGTGATAGATAACGATGTAATTCGTCATCTAGACTTATCCTCATTTCAGAAAACAACTGGAATAATCTCACCTTTAGCTAGTAAGTTTTGGGTTGTAAATTTGTTTTGAAATGAGTTCTGTGATCCCTGATGAGTTCTCTTTCCTAGTATTGTTACAGCTGAGCCAAAACAATTTCTTGAGCGTACAATTGGTTTTACAATCAATTATACCCGAGAAGATCCTCACGATCGACGTGAATTATCCGAATACCCTGACATAAGGCTGTGGTTTGTGAGGCTTGATTCAGAGTATCCATGGCTACCGGTCTTACTGGACTGGAGAGCGGGAGAGCTCGCTCGCTATGCAGCCATGCTCGTCCCTCACCAGGTGATGTTAGTGATGGCATGTTAAGAAAATGTTCTTATTAACATGGACTCATTTGGGATCTTTTTGGTTGCAGATTAGTATGAGAATGGGAATTGTGTTCAATCCTGAGGCTTTGGAGCTGTTTGTGATGAAGAAAGTTTTTATCGTGTATTCATGGTTGAAGCAACATGACATTCCAAAGCCAAGATTGAAAACAGCTAATATGGCTAGGATGCTTGGTTTTGGGATTGGAGATGAACTTTTTGACTTGATAGATCAACATCCAGTTGCCCCACCATGAAAGACGAGACTGAGCTCGAAACTCTGCTTCGATCGATCCTTTGAATCGAATCGAGAGCTGGTATTGTTCTCTCTTATGGAACTCCCACAATTGTATTCATATTCGCTTCTCGAAAATAGAGTTGGTAACCTTGTAATTGCCTGTTCTTAACTTTGCATAGCTTATTGTTGATGAATGAATAACTGAATGATGGAGCCATCAATGTATTCGACTTCGAGAATATGATTGTTAAGAAATGCTTTTCGATAAATTTGTTGTATTCTACACTCAATTACTGTGTATGGTACATGAATCTTTCTAATGAATAGGAAAGAATAGGATACAAAGATGTACAAATACCTTTCAAAACTCCTTTCTAGCAGAAATCTACTGTTCTAAACCATTGACGTCTGCGTATTAGAAAACCATCGTCCTTCGTTTAACTTTTCTTTGATCTCAGTTTTTACTAAGCGAACCAAGAAGAGAGCCGCGAAGAAGATGGAAAGAATCAACATGAAGAAGACACTGTTCCATCCTCTTCTGGAAACATATCCTGCCATTAGAGGGCCAAGAGCTGCCCCAACAGATCCCGTGCCATCTATGATCGCGGTCACGGTTGCTAAAGCGCGGGAATTCCCTCCAATCAAACTCTGAGTACCGAGATCAGCAGCAACCGCTGTTGTAATGAGTGAGTATGGACCATTGACAAGTAATCCCGAAAGAAACATCAAGCAGGTGTTGGTGACTGTGGAAATGCTCCCGAAAGCACGGTAGAGAACTAGAGAAGGAATCGAGAGCAGCAGGAACGTTACTGATGTAACTGCACGGGCATCGATCAAATCAGATATTAATCCTGCTAATATTCCACCACAGACTCCTCCGATGTCGAAAATGGTTGAGAGGATGCCGGCCGTTTTATCAGATAAAATCACACCAGCAACAGCTATCACAACAAAGAAAAACTGTTATCAGCAATTCAGACTTCAAAACTACATTTAGAACATGATTTCTACGTAATTCTGAACCTATTTATGTCAGTTGCTCCCATTCAGGGTATTGGATTGAGTGTCTGCTAGAGATATGTTTCTCTTCAAGGTTTTTAAAACGCATCTGCTAGAGATATGTTTCCAC

mRNA sequence

ATGGAGGAAGATCAGGGAGAAGATAAACCAGGCGGACGCCTCCGCCTCCCACCGTTGGTATTTTTGCACGCCTTATCGTCGTCTCCATGTCCACTCCCGCCATTAAACCTTTGCTTCCACTTTCTCCTTCCTCTATTCATCCATCTCGCTCGCCCATTTCATGGAGTTTCTGCAGACCTTTCTCAGATTCTTCGTCTTTTTGCTCTATTTTCACCTCTTCTCGGCAGCGACGACAAGTATCCGCCTCGGTTGCCTTTAATCCGTCCGGAAAATTTGATCTCTCTTTGCAAGATGATGAAGATGGTAAATCCTCGAATTTATTCTGATTCAATTTCTGATTTGTTCTGTACCTATTTCGATTCTTCTAAAGTTTCACCTCCAATGCCACCTACTGAAGGTCGGTTCGACGTGGTGATAGATAACGATGTAATTCGTCATCTAGACTTATCCTCATTTCAGAAAACAACTGGAATAATCTCACCTTTAGCTACTGAGCCAAAACAATTTCTTGAGCGTACAATTGGTTTTACAATCAATTATACCCGAGAAGATCCTCACGATCGACGTGAATTATCCGAATACCCTGACATAAGGCTGTGGTTTGTGAGGCTTGATTCAGAGTATCCATGGCTACCGGTCTTACTGGACTGGAGAGCGGGAGAGCTCGCTCGCTATGCAGCCATGCTCGTCCCTCACCAGATTAGTATGAGAATGGGAATTGTGTTCAATCCTGAGGCTTTGGAGCTGTTTGTGATGAAGAAAGTTTTTATCGTGTATTCATGGTTGAAGCAACATGACATTCCAAAGCCAAGATTGAAAACAGCTAATATGGCTAGGATGCTTGGTTTTGGGATTGGAGATGAACTTTTTGACTTGATAGATCAACATCCAGTTGCCCCACCATGAAAGACGAGACTGAGCTCGAAACTCTGCTTCGATCGATCCTTTGAATCGAATCGAGAGCTGGTATTGTTCTCTCTTATGGAACTCCCACAATTGTATTCATATTCGCTTCTCGAAAATAGAGTTGGTAACCTTGTAATTGCCTGTTCTTAACTTTGCATAGCTTATTGTTGATGAATGAATAACTGAATGATGGAGCCATCAATGTATTCGACTTCGAGAATATGATTGTTAAGAAATGCTTTTCGATAAATTTGTTGTATTCTACACTCAATTACTGTGTATGGTACATGAATCTTTCTAATGAATAGGAAAGAATAGGATACAAAGATGTACAAATACCTTTCAAAACTCCTTTCTAGCAGAAATCTACTGTTCTAAACCATTGACGTCTGCGTATTAGAAAACCATCGTCCTTCGTTTAACTTTTCTTTGATCTCAGTTTTTACTAAGCGAACCAAGAAGAGAGCCGCGAAGAAGATGGAAAGAATCAACATGAAGAAGACACTGTTCCATCCTCTTCTGGAAACATATCCTGCCATTAGAGGGCCAAGAGCTGCCCCAACAGATCCCGTGCCATCTATGATCGCGGTCACGGTTGCTAAAGCGCGGGAATTCCCTCCAATCAAACTCTGAGTACCGAGATCAGCAGCAACCGCTGTTGTAATGAGTGAGTATGGACCATTGACAAGTAATCCCGAAAGAAACATCAAGCAGGTGTTGGTGACTGTGGAAATGCTCCCGAAAGCACGGTAGAGAACTAGAGAAGGAATCGAGAGCAGCAGGAACGTTACTGATGTAACTGCACGGGCATCGATCAAATCAGATATTAATCCTGCTAATATTCCACCACAGACTCCTCCGATGTCGAAAATGGTTGAGAGGATGCCGGCCGTTTTATCAGATAAAATCACACCAGCAACAGCTATCACAACAAAGAAAAACTGTTATCAGCAATTCAGACTTCAAAACTACATTTAGAACATGATTTCTACGTAATTCTGAACCTATTTATGTCAGTTGCTCCCATTCAGGGTATTGGATTGAGTGTCTGCTAGAGATATGTTTCTCTTCAAGGTTTTTAAAACGCATCTGCTAGAGATATGTTTCCAC

Coding sequence (CDS)

ATGGAGGAAGATCAGGGAGAAGATAAACCAGGCGGACGCCTCCGCCTCCCACCGTTGGTATTTTTGCACGCCTTATCGTCGTCTCCATGTCCACTCCCGCCATTAAACCTTTGCTTCCACTTTCTCCTTCCTCTATTCATCCATCTCGCTCGCCCATTTCATGGAGTTTCTGCAGACCTTTCTCAGATTCTTCGTCTTTTTGCTCTATTTTCACCTCTTCTCGGCAGCGACGACAAGTATCCGCCTCGGTTGCCTTTAATCCGTCCGGAAAATTTGATCTCTCTTTGCAAGATGATGAAGATGGTAAATCCTCGAATTTATTCTGATTCAATTTCTGATTTGTTCTGTACCTATTTCGATTCTTCTAAAGTTTCACCTCCAATGCCACCTACTGAAGGTCGGTTCGACGTGGTGATAGATAACGATGTAATTCGTCATCTAGACTTATCCTCATTTCAGAAAACAACTGGAATAATCTCACCTTTAGCTACTGAGCCAAAACAATTTCTTGAGCGTACAATTGGTTTTACAATCAATTATACCCGAGAAGATCCTCACGATCGACGTGAATTATCCGAATACCCTGACATAAGGCTGTGGTTTGTGAGGCTTGATTCAGAGTATCCATGGCTACCGGTCTTACTGGACTGGAGAGCGGGAGAGCTCGCTCGCTATGCAGCCATGCTCGTCCCTCACCAGATTAGTATGAGAATGGGAATTGTGTTCAATCCTGAGGCTTTGGAGCTGTTTGTGATGAAGAAAGTTTTTATCGTGTATTCATGGTTGAAGCAACATGACATTCCAAAGCCAAGATTGAAAACAGCTAATATGGCTAGGATGCTTGGTTTTGGGATTGGAGATGAACTTTTTGACTTGATAGATCAACATCCAGTTGCCCCACCATGA

Protein sequence

MEEDQGEDKPGGRLRLPPLVFLHALSSSPCPLPPLNLCFHFLLPLFIHLARPFHGVSADLSQILRLFALFSPLLGSDDKYPPRLPLIRPENLISLCKMMKMVNPRIYSDSISDLFCTYFDSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPKQFLERTIGFTINYTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAAMLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGDELFDLIDQHPVAPP

Homology

[Close]

BLAST of Cp4.1LG18g05250 vs. Swiss-Prot
Match: CRR6_ARATH (Protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Arabidopsis thaliana GN=CRR6 PE=2 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 5.3e-79
Identity = 138/180 (76.67%), Postives = 156/180 (86.67%), Query Frame = 1


Query: 120 DSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPL---ATEPKQFLERTIGF 179
           DS KV PPMPPT GR++VVIDND I  LDLS FQ+  GI SP      EPK++L+RTIGF
Sbjct: 66  DSDKVEPPMPPTTGRYEVVIDNDSIGRLDLSPFQRAIGITSPDDFGVAEPKRYLDRTIGF 125

Query: 180 TINYTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAAMLVPHQISM 239
           TINY REDP D RELSEYPD+RLWFVRLD+ YPWLP+LLDWRAGELARYAAMLVPHQ+S+
Sbjct: 126 TINYKREDPGDPRELSEYPDVRLWFVRLDAMYPWLPLLLDWRAGELARYAAMLVPHQMSL 185

Query: 240 RMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGDELFDLIDQH 297
           RMG+VFNPEALELFVM KVF+VY WLK+H +PKPRLKT++MARMLGFGIGDELFDLID +
Sbjct: 186 RMGVVFNPEALELFVMNKVFVVYPWLKRHGVPKPRLKTSDMARMLGFGIGDELFDLIDHN 245

[Close]

BLAST of Cp4.1LG18g05250 vs. TrEMBL
Match: A0A0A0LTF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G264560 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 7.9e-98
Identity = 174/182 (95.60%), Postives = 177/182 (97.25%), Query Frame = 1


Query: 120 DSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPKQFLERTIGFTIN 179
           DSSKV+PPMPPTEGRFDVVIDND IR LDLSSFQ TTGI+SPLATEPKQFLERTIGFTIN
Sbjct: 73  DSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPKQFLERTIGFTIN 132

Query: 180 YTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAAMLVPHQISMRMG 239
           YTREDP+DRRELSEYPDIRLWFVRLDS YPWLPVLLDWRAGELARYAAMLVPHQISMRMG
Sbjct: 133 YTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAAMLVPHQISMRMG 192

Query: 240 IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGDELFDLIDQHPVA 299
           IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLK ANMARMLGFGIGDELFDLIDQHPVA
Sbjct: 193 IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGDELFDLIDQHPVA 252

Query: 300 PP 302
           PP
Sbjct: 253 PP 254

[Close]

BLAST of Cp4.1LG18g05250 vs. TrEMBL
Match: D7T4Z8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00630 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 2.5e-88
Identity = 153/181 (84.53%), Postives = 168/181 (92.82%), Query Frame = 1


Query: 120 DSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPKQFLERTIGFTIN 179
           DS+KVSPPMPPTEGR +VVIDNDVIR LDLS F   TGI SP + EPK+FLERTIGFTIN
Sbjct: 33  DSTKVSPPMPPTEGRIEVVIDNDVIRRLDLSPFHTATGITSPSSAEPKEFLERTIGFTIN 92

Query: 180 YTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAAMLVPHQISMRMG 239
           YTREDPHD RELSE+PDIRLWFVRLD+ YPWLPV+LDWRAGELARY AMLVPHQ++MRMG
Sbjct: 93  YTREDPHDPRELSEFPDIRLWFVRLDATYPWLPVVLDWRAGELARYTAMLVPHQMNMRMG 152

Query: 240 IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGDELFDLIDQHPVA 299
           +VFNPEALELF+MKKVF+VYSWLKQH IPKPRLKT++MARMLGFGIGDELFDLIDQHP+A
Sbjct: 153 VVFNPEALELFIMKKVFVVYSWLKQHKIPKPRLKTSDMARMLGFGIGDELFDLIDQHPLA 212

Query: 300 P 301
           P
Sbjct: 213 P 213

[Close]

BLAST of Cp4.1LG18g05250 vs. TrEMBL
Match: A5CBF1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004173 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 2.5e-88
Identity = 153/181 (84.53%), Postives = 168/181 (92.82%), Query Frame = 1


Query: 120 DSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPKQFLERTIGFTIN 179
           DS+KVSPPMPPTEGR +VVIDNDVIR LDLS F   TGI SP + EPK+FLERTIGFTIN
Sbjct: 73  DSTKVSPPMPPTEGRIEVVIDNDVIRRLDLSPFHTATGITSPSSAEPKEFLERTIGFTIN 132

Query: 180 YTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAAMLVPHQISMRMG 239
           YTREDPHD RELSE+PDIRLWFVRLD+ YPWLPV+LDWRAGELARY AMLVPHQ++MRMG
Sbjct: 133 YTREDPHDPRELSEFPDIRLWFVRLDATYPWLPVVLDWRAGELARYTAMLVPHQMNMRMG 192

Query: 240 IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGDELFDLIDQHPVA 299
           +VFNPEALELF+MKKVF+VYSWLKQH IPKPRLKT++MARMLGFGIGDELFDLIDQHP+A
Sbjct: 193 VVFNPEALELFIMKKVFVVYSWLKQHKIPKPRLKTSDMARMLGFGIGDELFDLIDQHPLA 252

Query: 300 P 301
           P
Sbjct: 253 P 253

[Close]

BLAST of Cp4.1LG18g05250 vs. TrEMBL
Match: A5C0C8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018847 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 4.8e-87
Identity = 151/181 (83.43%), Postives = 166/181 (91.71%), Query Frame = 1


Query: 120 DSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPKQFLERTIGFTIN 179
           DS+KVSPPMPP EGR +V IDNDVIR LDLS F   TGI SP + EPK+FLERTIGFTIN
Sbjct: 75  DSTKVSPPMPPXEGRIEVXIDNDVIRRLDLSPFHTATGITSPSSAEPKEFLERTIGFTIN 134

Query: 180 YTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAAMLVPHQISMRMG 239
           YTREDPHD RELSE+PDIRLWFVRLD+ YPWLPV+LDWRAGELARY AMLVPHQ++MRMG
Sbjct: 135 YTREDPHDPRELSEFPDIRLWFVRLDATYPWLPVVLDWRAGELARYTAMLVPHQMNMRMG 194

Query: 240 IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGDELFDLIDQHPVA 299
           +VFNPEALELF+MKKVF+VYSWLKQH IPKPRLKT++MARMLGFGIGDELFDLIDQHP+A
Sbjct: 195 VVFNPEALELFIMKKVFVVYSWLKQHKIPKPRLKTSDMARMLGFGIGDELFDLIDQHPLA 254

Query: 300 P 301
           P
Sbjct: 255 P 255

[Close]

BLAST of Cp4.1LG18g05250 vs. TrEMBL
Match: A0A0F7GZE6_9ROSI (Chlororespiratory reduction 6 OS=Pelargonium nanum GN=CRR6 PE=2 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.8e-86
Identity = 151/180 (83.89%), Postives = 168/180 (93.33%), Query Frame = 1


Query: 120 DSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPKQFLERTIGFTIN 179
           DS KV PP+PP+EGRFDVVIDNDVIR LDLS FQ  TG+ SPL+ +PK+FLERTIGFTIN
Sbjct: 73  DSPKVDPPLPPSEGRFDVVIDNDVIRGLDLSPFQSATGMASPLSVDPKEFLERTIGFTIN 132

Query: 180 YTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAAMLVPHQISMRMG 239
           YT+EDP+D RELSE+PDIRLWFVRLDS YPWLPVLLDWRAGELARYAAMLVPHQ+S RMG
Sbjct: 133 YTKEDPYDIRELSEFPDIRLWFVRLDSIYPWLPVLLDWRAGELARYAAMLVPHQMSARMG 192

Query: 240 IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGDELFDLIDQHPVA 299
           +VFNPEALELFVMKKVFIVYSWLKQH+IPKPRLKT +MARMLGFGIGDELFDL+D+HP++
Sbjct: 193 VVFNPEALELFVMKKVFIVYSWLKQHNIPKPRLKTCDMARMLGFGIGDELFDLVDKHPLS 252

[Close]

BLAST of Cp4.1LG18g05250 vs. TAIR10
Match: AT2G47910.1 (AT2G47910.1 chlororespiratory reduction 6)

HSP 1 Score: 295.8 bits (756), Expect = 3.0e-80
Identity = 138/180 (76.67%), Postives = 156/180 (86.67%), Query Frame = 1


Query: 120 DSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPL---ATEPKQFLERTIGF 179
           DS KV PPMPPT GR++VVIDND I  LDLS FQ+  GI SP      EPK++L+RTIGF
Sbjct: 66  DSDKVEPPMPPTTGRYEVVIDNDSIGRLDLSPFQRAIGITSPDDFGVAEPKRYLDRTIGF 125

Query: 180 TINYTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAAMLVPHQISM 239
           TINY REDP D RELSEYPD+RLWFVRLD+ YPWLP+LLDWRAGELARYAAMLVPHQ+S+
Sbjct: 126 TINYKREDPGDPRELSEYPDVRLWFVRLDAMYPWLPLLLDWRAGELARYAAMLVPHQMSL 185

Query: 240 RMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGDELFDLIDQH 297
           RMG+VFNPEALELFVM KVF+VY WLK+H +PKPRLKT++MARMLGFGIGDELFDLID +
Sbjct: 186 RMGVVFNPEALELFVMNKVFVVYPWLKRHGVPKPRLKTSDMARMLGFGIGDELFDLIDHN 245

[Close]

BLAST of Cp4.1LG18g05250 vs. NCBI nr
Match: gi|659086399|ref|XP_008443914.1| (PREDICTED: uncharacterized protein LOC103487393 [Cucumis melo])

HSP 1 Score: 365.9 bits (938), Expect = 6.6e-98
Identity = 175/182 (96.15%), Postives = 177/182 (97.25%), Query Frame = 1


Query: 120 DSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPKQFLERTIGFTIN 179
           DS KV+PPMPPTEGRFDVVIDND IR LDLSSFQKTTGIISPLATEPKQFLERTIGFTIN
Sbjct: 70  DSPKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQKTTGIISPLATEPKQFLERTIGFTIN 129

Query: 180 YTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAAMLVPHQISMRMG 239
           YTREDP+DRRELSEYPDIRLWFVRLDS YPWLPVLLDWRAGELARYAAMLVPHQISMRMG
Sbjct: 130 YTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAAMLVPHQISMRMG 189

Query: 240 IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGDELFDLIDQHPVA 299
           IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLK ANMARMLGFGIGDELFDLIDQHPVA
Sbjct: 190 IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGDELFDLIDQHPVA 249

Query: 300 PP 302
           PP
Sbjct: 250 PP 251

[Close]

BLAST of Cp4.1LG18g05250 vs. NCBI nr
Match: gi|778660177|ref|XP_011655753.1| (PREDICTED: uncharacterized protein LOC101216098 [Cucumis sativus])

HSP 1 Score: 365.2 bits (936), Expect = 1.1e-97
Identity = 174/182 (95.60%), Postives = 177/182 (97.25%), Query Frame = 1


Query: 120 DSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPKQFLERTIGFTIN 179
           DSSKV+PPMPPTEGRFDVVIDND IR LDLSSFQ TTGI+SPLATEPKQFLERTIGFTIN
Sbjct: 73  DSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPKQFLERTIGFTIN 132

Query: 180 YTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAAMLVPHQISMRMG 239
           YTREDP+DRRELSEYPDIRLWFVRLDS YPWLPVLLDWRAGELARYAAMLVPHQISMRMG
Sbjct: 133 YTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAAMLVPHQISMRMG 192

Query: 240 IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGDELFDLIDQHPVA 299
           IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLK ANMARMLGFGIGDELFDLIDQHPVA
Sbjct: 193 IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGDELFDLIDQHPVA 252

Query: 300 PP 302
           PP
Sbjct: 253 PP 254

[Close]

BLAST of Cp4.1LG18g05250 vs. NCBI nr
Match: gi|225463047|ref|XP_002268060.1| (PREDICTED: uncharacterized protein LOC100255118 [Vitis vinifera])

HSP 1 Score: 333.6 bits (854), Expect = 3.7e-88
Identity = 153/181 (84.53%), Postives = 168/181 (92.82%), Query Frame = 1


Query: 120 DSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPKQFLERTIGFTIN 179
           DS+KVSPPMPPTEGR +VVIDNDVIR LDLS F   TGI SP + EPK+FLERTIGFTIN
Sbjct: 73  DSTKVSPPMPPTEGRIEVVIDNDVIRRLDLSPFHTATGITSPSSAEPKEFLERTIGFTIN 132

Query: 180 YTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAAMLVPHQISMRMG 239
           YTREDPHD RELSE+PDIRLWFVRLD+ YPWLPV+LDWRAGELARY AMLVPHQ++MRMG
Sbjct: 133 YTREDPHDPRELSEFPDIRLWFVRLDATYPWLPVVLDWRAGELARYTAMLVPHQMNMRMG 192

Query: 240 IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGDELFDLIDQHPVA 299
           +VFNPEALELF+MKKVF+VYSWLKQH IPKPRLKT++MARMLGFGIGDELFDLIDQHP+A
Sbjct: 193 VVFNPEALELFIMKKVFVVYSWLKQHKIPKPRLKTSDMARMLGFGIGDELFDLIDQHPLA 252

Query: 300 P 301
           P
Sbjct: 253 P 253

[Close]

BLAST of Cp4.1LG18g05250 vs. NCBI nr
Match: gi|296084559|emb|CBI25580.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 333.6 bits (854), Expect = 3.7e-88
Identity = 153/181 (84.53%), Postives = 168/181 (92.82%), Query Frame = 1


Query: 120 DSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPKQFLERTIGFTIN 179
           DS+KVSPPMPPTEGR +VVIDNDVIR LDLS F   TGI SP + EPK+FLERTIGFTIN
Sbjct: 33  DSTKVSPPMPPTEGRIEVVIDNDVIRRLDLSPFHTATGITSPSSAEPKEFLERTIGFTIN 92

Query: 180 YTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAAMLVPHQISMRMG 239
           YTREDPHD RELSE+PDIRLWFVRLD+ YPWLPV+LDWRAGELARY AMLVPHQ++MRMG
Sbjct: 93  YTREDPHDPRELSEFPDIRLWFVRLDATYPWLPVVLDWRAGELARYTAMLVPHQMNMRMG 152

Query: 240 IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGDELFDLIDQHPVA 299
           +VFNPEALELF+MKKVF+VYSWLKQH IPKPRLKT++MARMLGFGIGDELFDLIDQHP+A
Sbjct: 153 VVFNPEALELFIMKKVFVVYSWLKQHKIPKPRLKTSDMARMLGFGIGDELFDLIDQHPLA 212

Query: 300 P 301
           P
Sbjct: 213 P 213

[Close]

BLAST of Cp4.1LG18g05250 vs. NCBI nr
Match: gi|147822285|emb|CAN72910.1| (hypothetical protein VITISV_018847 [Vitis vinifera])

HSP 1 Score: 329.3 bits (843), Expect = 6.9e-87
Identity = 151/181 (83.43%), Postives = 166/181 (91.71%), Query Frame = 1


Query: 120 DSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPKQFLERTIGFTIN 179
           DS+KVSPPMPP EGR +V IDNDVIR LDLS F   TGI SP + EPK+FLERTIGFTIN
Sbjct: 75  DSTKVSPPMPPXEGRIEVXIDNDVIRRLDLSPFHTATGITSPSSAEPKEFLERTIGFTIN 134

Query: 180 YTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAAMLVPHQISMRMG 239
           YTREDPHD RELSE+PDIRLWFVRLD+ YPWLPV+LDWRAGELARY AMLVPHQ++MRMG
Sbjct: 135 YTREDPHDPRELSEFPDIRLWFVRLDATYPWLPVVLDWRAGELARYTAMLVPHQMNMRMG 194

Query: 240 IVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGDELFDLIDQHPVA 299
           +VFNPEALELF+MKKVF+VYSWLKQH IPKPRLKT++MARMLGFGIGDELFDLIDQHP+A
Sbjct: 195 VVFNPEALELFIMKKVFVVYSWLKQHKIPKPRLKTSDMARMLGFGIGDELFDLIDQHPLA 254

Query: 300 P 301
           P
Sbjct: 255 P 255

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g05250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CRR6_ARATH	5.3e-79	76.67	Protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Arabidopsis thaliana GN=...	[more]

BLAST of Cp4.1LG18g05250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTF0_CUCSA	7.9e-98	95.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G264560 PE=4 SV=1	[more]
D7T4Z8_VITVI	2.5e-88	84.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00630 PE=4 SV=...	[more]
A5CBF1_VITVI	2.5e-88	84.53	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004173 PE=4 SV=1	[more]
A5C0C8_VITVI	4.8e-87	83.43	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018847 PE=4 SV=1	[more]
A0A0F7GZE6_9ROSI	1.8e-86	83.89	Chlororespiratory reduction 6 OS=Pelargonium nanum GN=CRR6 PE=2 SV=1	[more]

BLAST of Cp4.1LG18g05250 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47910.1	3.0e-80	76.67	chlororespiratory reduction 6	[more]

BLAST of Cp4.1LG18g05250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086399\|ref\|XP_008443914.1\|	6.6e-98	96.15	PREDICTED: uncharacterized protein LOC103487393 [Cucumis melo]	[more]
gi\|778660177\|ref\|XP_011655753.1\|	1.1e-97	95.60	PREDICTED: uncharacterized protein LOC101216098 [Cucumis sativus]	[more]
gi\|225463047\|ref\|XP_002268060.1\|	3.7e-88	84.53	PREDICTED: uncharacterized protein LOC100255118 [Vitis vinifera]	[more]
gi\|296084559\|emb\|CBI25580.3\|	3.7e-88	84.53	unnamed protein product [Vitis vinifera]	[more]
gi\|147822285\|emb\|CAN72910.1\|	6.9e-87	83.43	hypothetical protein VITISV_018847 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014946	CRR6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0010275	NAD(P)H dehydrogenase complex assembly
biological_process	GO:0008150	biological_process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g05250.1	Cp4.1LG18g05250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014946	Protein chlororespiratory reduction 6	PFAM	PF08847	DUF1817	coord: 139..292 score: 7.2
None	No IPR available	PANTHER	PTHR35724	FAMILY NOT NAMED	coord: 46..301 score: 3.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g05250	Cucsa.350610	Cucumber (Gy14) v1	cgycpeB0916
Cp4.1LG18g05250	CmaCh10G005010	Cucurbita maxima (Rimu)	cmacpeB080
Cp4.1LG18g05250	CmoCh10G005350	Cucurbita moschata (Rifu)	cmocpeB055
Cp4.1LG18g05250	Cla018688	Watermelon (97103) v1	cpewmB372
Cp4.1LG18g05250	Csa1G264560	Cucumber (Chinese Long) v2	cpecuB350
Cp4.1LG18g05250	MELO3C010270	Melon (DHL92) v3.5.1	cpemeB334
Cp4.1LG18g05250	ClCG06G011950	Watermelon (Charleston Gray)	cpewcgB335
Cp4.1LG18g05250	CSPI01G17180	Wild cucumber (PI 183967)	cpecpiB351
Cp4.1LG18g05250	Lsi06G010630	Bottle gourd (USVL1VR-Ls)	cpelsiB308
Cp4.1LG18g05250	MELO3C010270.2	Melon (DHL92) v3.6.1	cpemedB392
Cp4.1LG18g05250	CsaV3_1G028410	Cucumber (Chinese Long) v3	cpecucB0429
Cp4.1LG18g05250	BhiUN297G11	Wax gourd	cpewgoB0438
Cp4.1LG18g05250	CsGy1G017390	Cucumber (Gy14) v2	cgybcpeB040
Cp4.1LG18g05250	Carg09961	Silver-seed gourd	carcpeB0185

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG18g05250	Cucumber (Chinese Long) v3	cpecucB0454
Cp4.1LG18g05250	Cucumber (Chinese Long) v3	cpecucB0460
Cp4.1LG18g05250	Wax gourd	cpewgoB0466
Cp4.1LG18g05250	Wax gourd	cpewgoB0454
Cp4.1LG18g05250	Cucurbita pepo (Zucchini)	cpecpeB356
Cp4.1LG18g05250	Cucurbita pepo (Zucchini)	cpecpeB113
Cp4.1LG18g05250	Cucurbita pepo (Zucchini)	cpecpeB360
Cp4.1LG18g05250	Cucurbita pepo (Zucchini)	cpecpeB370
Cp4.1LG18g05250	Cucumber (Gy14) v1	cgycpeB0352
Cp4.1LG18g05250	Cucurbita maxima (Rimu)	cmacpeB038
Cp4.1LG18g05250	Cucurbita maxima (Rimu)	cmacpeB132
Cp4.1LG18g05250	Cucurbita maxima (Rimu)	cmacpeB474
Cp4.1LG18g05250	Cucurbita maxima (Rimu)	cmacpeB775
Cp4.1LG18g05250	Cucurbita moschata (Rifu)	cmocpeB013
Cp4.1LG18g05250	Cucurbita moschata (Rifu)	cmocpeB108
Cp4.1LG18g05250	Cucurbita moschata (Rifu)	cmocpeB432
Cp4.1LG18g05250	Cucurbita moschata (Rifu)	cmocpeB730
Cp4.1LG18g05250	Bottle gourd (USVL1VR-Ls)	cpelsiB297
Cp4.1LG18g05250	Bottle gourd (USVL1VR-Ls)	cpelsiB300
Cp4.1LG18g05250	Watermelon (Charleston Gray)	cpewcgB334
Cp4.1LG18g05250	Watermelon (97103) v1	cpewmB362
Cp4.1LG18g05250	Melon (DHL92) v3.5.1	cpemeB343
Cp4.1LG18g05250	Cucumber (Gy14) v2	cgybcpeB208
Cp4.1LG18g05250	Cucumber (Gy14) v2	cgybcpeB499
Cp4.1LG18g05250	Melon (DHL92) v3.6.1	cpemedB401
Cp4.1LG18g05250	Melon (DHL92) v3.6.1	cpemedB405
Cp4.1LG18g05250	Silver-seed gourd	carcpeB0897
Cp4.1LG18g05250	Silver-seed gourd	carcpeB0358
Cp4.1LG18g05250	Silver-seed gourd	carcpeB0818