Cp4.1LG18g09050 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g09050
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNucleic acid binding protein, putative
LocationCp4.1LG18 : 8115128 .. 8115637 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTCCTTCCGACGCCTCACACCATAGCGTCGTCGTCGTCGTCATCGCACATGTCGTCCCGCCCATCCGCGTCGTCGATGAGGTTCCGGTCGGATCCGTATGAAGCGGGTCCAGGATCGCTGGACCTGCAGCTATCGATAAGCGTGAGGCCAATCCGGCCTACGGCGGAGTGCGTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGGGCTGCGTGGAGGCGCTGAAGTGGCAGGCGGCGGAGCAAATAAGGCTGGCGGCGATGGAAAAGGCGTACGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAGATAGAATTGGCGCAGACGGAATTCGGAAGGGCCCGGCAGATGTGGGAGAGGGCGCGAGAAGAAGTGGAGAAGGCGGAGCGTATGAAAGAGAGAGCCACTCGGCAAATGGACTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTGTTAA

mRNA sequence

ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTCCTTCCGACGCCTCACACCATAGCGTCGTCGTCGTCGTCATCGCACATGTCGTCCCGCCCATCCGCGTCGTCGATGAGGTTCCGGTCGGATCCGTATGAAGCGGGTCCAGGATCGCTGGACCTGCAGCTATCGATAAGCGTGAGGCCAATCCGGCCTACGGCGGAGTGCGTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGGGCTGCGTGGAGGCGCTGAAGTGGCAGGCGGCGGAGCAAATAAGGCTGGCGGCGATGGAAAAGGCGTACGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAGATAGAATTGGCGCAGACGGAATTCGGAAGGGCCCGGCAGATGTGGGAGAGGGCGCGAGAAGAAGTGGAGAAGGCGGAGCGTATGAAAGAGAGAGCCACTCGGCAAATGGACTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTGTTAA

Coding sequence (CDS)

ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTCCTTCCGACGCCTCACACCATAGCGTCGTCGTCGTCGTCATCGCACATGTCGTCCCGCCCATCCGCGTCGTCGATGAGGTTCCGGTCGGATCCGTATGAAGCGGGTCCAGGATCGCTGGACCTGCAGCTATCGATAAGCGTGAGGCCAATCCGGCCTACGGCGGAGTGCGTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGGGCTGCGTGGAGGCGCTGAAGTGGCAGGCGGCGGAGCAAATAAGGCTGGCGGCGATGGAAAAGGCGTACGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAGATAGAATTGGCGCAGACGGAATTCGGAAGGGCCCGGCAGATGTGGGAGAGGGCGCGAGAAGAAGTGGAGAAGGCGGAGCGTATGAAAGAGAGAGCCACTCGGCAAATGGACTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTGTTAA

Protein sequence

MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAAGCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPC
Homology
[Close]
BLAST of Cp4.1LG18g09050 vs. Swiss-Prot
Match: IDD15_ARATH (Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-08
Identity = 32/79 (40.51%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 90  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATR 149
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EF  A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 335 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 394

Query: 150 QMDSTCMEITCQSCRQRFR 168
           ++ ST M++TCQ+C+ +F+
Sbjct: 395 KISSTIMQVTCQTCKGQFQ 413

[Close]
BLAST of Cp4.1LG18g09050 vs. Swiss-Prot
Match: IDD16_ARATH (Protein indeterminate-domain 16 OS=Arabidopsis thaliana GN=IDD16 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-06
Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = 1 

Query: 25  SHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAAGCVE 84
           S+  S   A      S P+E    SL+LQLSI +      A    K E  +  E A   E
Sbjct: 214 SNQHSPAFAYPFNASSAPFE----SLELQLSIGMARTSAQARHNEKRETSLTKERAN-EE 273

Query: 85  ALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKE 144
           A K                AE  R+  KR+IE+A+ +F +A+++ E A+ E+EKA  ++E
Sbjct: 274 ARK----------------AEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVVRE 333

Query: 145 RATRQMDSTCMEITCQSCRQRFR 168
            A +++++T MEITC SC+Q F+
Sbjct: 334 EAIKRINATMMEITCHSCKQLFQ 335

[Close]
BLAST of Cp4.1LG18g09050 vs. Swiss-Prot
Match: IDD14_ARATH (Protein indeterminate-domain 14 OS=Arabidopsis thaliana GN=IDD14 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-06
Identity = 27/63 (42.86%), Postives = 44/63 (69.84%), Query Frame = 1 

Query: 105 ERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 164
           E  R  TKR+IE+A+ EF  A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q
Sbjct: 315 EEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRRISATMMQITCHNCKQ 374

Query: 165 RFR 168
            F+
Sbjct: 375 HFQ 377

[Close]
BLAST of Cp4.1LG18g09050 vs. TrEMBL
Match: A0A0A0LRS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001530 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.5e-69
Identity = 153/175 (87.43%), Postives = 163/175 (93.14%), Query Frame = 1 

Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPS-ASSMRFRSDP-YEAGPG-SLDLQLSIS 60
           MEDEDQKELQLLPTPH+IASSS+S H+SSRPS +SS+RFRSDP +EAG G S+DLQLSIS
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTS-HISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSIS 60

Query: 61  VRPIRPT----AECVFKYEEVMKPEAAGCVEALKWQAAEQIRLAAMEKAYAERVRELTKR 120
           +RPIRP     AEC+FKYEEVMKPEAA CV+ALKWQAAEQIRLAAMEKAYAERVRELTKR
Sbjct: 61  LRPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKR 120

Query: 121 EIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 169
           EIELAQTEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP
Sbjct: 121 EIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 174

[Close]
BLAST of Cp4.1LG18g09050 vs. TrEMBL
Match: M5WPY3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021164mg PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 127/182 (69.78%), Postives = 142/182 (78.02%), Query Frame = 1 

Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFR-------SDPYEAGPGSLDLQ 60
           ME +DQKELQLLP+PH +  +SSSS  +SRPS SS+R+         D    GP SLDLQ
Sbjct: 1   MEGDDQKELQLLPSPHLM--TSSSSQRTSRPSDSSIRYHRSSKAAVQDALLEGPNSLDLQ 60

Query: 61  LSISVRPIRPTAE---CVFKYE----EVMKPEAAGCVEALKWQAAEQIRLAAMEKAYAER 120
           LSISVRPIR  +    CV        +V+KP+ AGCVEALKWQAAEQIRLAAMEKAYAER
Sbjct: 61  LSISVRPIRAASSSDHCVVSKPVCDFDVLKPKTAGCVEALKWQAAEQIRLAAMEKAYAER 120

Query: 121 VRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRF 169
           VRELT+RE+ELAQ+EF RAR MWERAREEVEKAERMKE+A  QMDSTCMEITCQSCRQRF
Sbjct: 121 VRELTRREMELAQSEFTRARHMWERAREEVEKAERMKEKAMLQMDSTCMEITCQSCRQRF 180

[Close]
BLAST of Cp4.1LG18g09050 vs. TrEMBL
Match: A5BWN7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01360 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.4e-51
Identity = 124/176 (70.45%), Postives = 145/176 (82.39%), Query Frame = 1 

Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRS---DPYEAGPGSLDLQLSIS 60
           ME++DQKELQLLP+PH++ASSS    MS RPS SS+R+R    DP+E GPG LDLQLSIS
Sbjct: 1   MEEDDQKELQLLPSPHSMASSS---RMSGRPSDSSLRYRGIGGDPFE-GPG-LDLQLSIS 60

Query: 61  VRPIRPTAECVF-----KYEEVMKPEAAGCVEALKWQAAEQIRLAAMEKAYAERVRELTK 120
           +RPIRP  E V      +Y +V   + A CV+ALKWQAAEQIRLAAMEKAYAERVRELT+
Sbjct: 61  LRPIRPPPEYVLAGQICEYGDVK--QEASCVDALKWQAAEQIRLAAMEKAYAERVRELTR 120

Query: 121 REIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 169
           RE+ELAQ+EF RAR MWERA EEVEKAE+MKE+A R++DSTCMEITCQ+CRQRFRP
Sbjct: 121 REMELAQSEFARARHMWERAHEEVEKAEKMKEKAMRRIDSTCMEITCQACRQRFRP 169

[Close]
BLAST of Cp4.1LG18g09050 vs. TrEMBL
Match: A0A061FYZ0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014645 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.9e-49
Identity = 125/177 (70.62%), Postives = 142/177 (80.23%), Query Frame = 1 

Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFR----SDPYEAGPGSLDLQLSI 60
           ME+EDQKELQLLPT  +IA   SSS MSSR S SS+R+R    SD YE GP SLDLQLSI
Sbjct: 1   MEEEDQKELQLLPTSLSIA---SSSQMSSRASDSSLRYRSTTTSDQYE-GP-SLDLQLSI 60

Query: 61  SVRPIRPTAECVF-----KYEEVMKPEAAGCVEALKWQAAEQIRLAAMEKAYAERVRELT 120
           S+RPI+  + CV       + +V       CVE+LKWQAAEQIRLAA+EKAYAERVR+LT
Sbjct: 61  SLRPIQQPSNCVIAGPICDFGDVKAD--TSCVESLKWQAAEQIRLAAIEKAYAERVRDLT 120

Query: 121 KREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 169
           KRE+ELAQ+EF RAR MW+RAREEVEKAERMKERATR++DSTCMEITCQSCRQRFRP
Sbjct: 121 KREMELAQSEFARARHMWQRAREEVEKAERMKERATRKIDSTCMEITCQSCRQRFRP 170

[Close]
BLAST of Cp4.1LG18g09050 vs. TrEMBL
Match: B9RAF7_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1506160 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.1e-47
Identity = 117/178 (65.73%), Postives = 138/178 (77.53%), Query Frame = 1 

Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRP-SASSMRFRS------DPYEAGPGSLDLQ 60
           ME++D KELQLLP+  ++ASSSS S MS RP  ++S+R+RS      D  + G  SLDLQ
Sbjct: 1   MEEDDHKELQLLPSQQSLASSSSCSLMSFRPPDSNSLRYRSSATVSADHNQFGGPSLDLQ 60

Query: 61  LSISVRPIRPTAECVFKYEEVMKPEA---AGCVEALKWQAAEQIRLAAMEKAYAERVREL 120
           LSIS+ PI+  + CV         +     GCVEALKWQAAEQIRLAA+EKAYAERVREL
Sbjct: 61  LSISLSPIQAPSNCVLTGPICDFSDGKVDTGCVEALKWQAAEQIRLAAIEKAYAERVREL 120

Query: 121 TKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 169
           T+RE+ELAQ+EF RAR MW+RAREE EKAERMKERATRQ+DSTCMEITCQSCRQRF+P
Sbjct: 121 TRREMELAQSEFARARHMWQRAREEAEKAERMKERATRQIDSTCMEITCQSCRQRFKP 178

[Close]
BLAST of Cp4.1LG18g09050 vs. TAIR10
Match: AT3G48550.1 (AT3G48550.1 BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3))

HSP 1 Score: 139.8 bits (351), Expect = 1.5e-33
Identity = 88/170 (51.76%), Postives = 114/170 (67.06%), Query Frame = 1 

Query: 2   EDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGP---GSLDLQLSISV 61
           + +  KELQLLP+P     S+ S     RP+  +    ++ + +       LDL+LSIS+
Sbjct: 4   QQDHHKELQLLPSP----PSTESPVRKHRPTVITTDHHNNHHRSSSMIHHDLDLKLSISL 63

Query: 62  RPIRPTAECVFKYEEVMKPEAAGCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA 121
             I    E              G VEALKWQAAEQIRLAA+EKAYAERVRELT+RE+E+A
Sbjct: 64  SSISTAEEL-----------PNGGVEALKWQAAEQIRLAAIEKAYAERVRELTRREMEMA 123

Query: 122 QTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 169
           Q+EF RAR MW++AREEVE+AER+KER+  ++D+ C+EITC SCRQRFRP
Sbjct: 124 QSEFARARVMWQKAREEVERAERLKERSMTKIDTACLEITCHSCRQRFRP 158

[Close]
BLAST of Cp4.1LG18g09050 vs. TAIR10
Match: AT2G01940.3 (AT2G01940.3 C2H2-like zinc finger protein)

HSP 1 Score: 60.8 bits (146), Expect = 9.0e-10
Identity = 32/79 (40.51%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 90  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATR 149
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EF  A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 336 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 395

Query: 150 QMDSTCMEITCQSCRQRFR 168
           ++ ST M++TCQ+C+ +F+
Sbjct: 396 KISSTIMQVTCQTCKGQFQ 414

[Close]
BLAST of Cp4.1LG18g09050 vs. TAIR10
Match: AT1G25250.1 (AT1G25250.1 indeterminate(ID)-domain 16)

HSP 1 Score: 54.3 bits (129), Expect = 8.5e-08
Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = 1 

Query: 25  SHMSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAAGCVE 84
           S+  S   A      S P+E    SL+LQLSI +      A    K E  +  E A   E
Sbjct: 214 SNQHSPAFAYPFNASSAPFE----SLELQLSIGMARTSAQARHNEKRETSLTKERAN-EE 273

Query: 85  ALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKE 144
           A K                AE  R+  KR+IE+A+ +F +A+++ E A+ E+EKA  ++E
Sbjct: 274 ARK----------------AEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVVRE 333

Query: 145 RATRQMDSTCMEITCQSCRQRFR 168
            A +++++T MEITC SC+Q F+
Sbjct: 334 EAIKRINATMMEITCHSCKQLFQ 335

[Close]
BLAST of Cp4.1LG18g09050 vs. TAIR10
Match: AT1G68130.1 (AT1G68130.1 indeterminate(ID)-domain 14)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07
Identity = 27/63 (42.86%), Postives = 44/63 (69.84%), Query Frame = 1 

Query: 105 ERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 164
           E  R  TKR+IE+A+ EF  A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q
Sbjct: 315 EEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRRISATMMQITCHNCKQ 374

Query: 165 RFR 168
            F+
Sbjct: 375 HFQ 377

[Close]
BLAST of Cp4.1LG18g09050 vs. NCBI nr
Match: gi|659128904|ref|XP_008464429.1| (PREDICTED: uncharacterized protein LOC103502321 [Cucumis melo])

HSP 1 Score: 278.9 bits (712), Expect = 6.0e-72
Identity = 154/172 (89.53%), Postives = 160/172 (93.02%), Query Frame = 1 

Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYEAGP-GSLDLQLSISVR 60
           MEDEDQKELQLLPTPH+IAS  SSSHMSSRPS SS+RFRSDP+EAG  GS+DLQLSIS+R
Sbjct: 1   MEDEDQKELQLLPTPHSIAS--SSSHMSSRPSDSSLRFRSDPFEAGSGGSVDLQLSISLR 60

Query: 61  PIRPT---AECVFKYEEVMKPEAAGCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE 120
           PIRP     EC+FKYEEVMKPEAA CVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE
Sbjct: 61  PIRPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE 120

Query: 121 LAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 169
           LAQTEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP
Sbjct: 121 LAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 170

[Close]
BLAST of Cp4.1LG18g09050 vs. NCBI nr
Match: gi|449440550|ref|XP_004138047.1| (PREDICTED: protein indeterminate-domain 16 [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 3.6e-69
Identity = 153/175 (87.43%), Postives = 163/175 (93.14%), Query Frame = 1 

Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPS-ASSMRFRSDP-YEAGPG-SLDLQLSIS 60
           MEDEDQKELQLLPTPH+IASSS+S H+SSRPS +SS+RFRSDP +EAG G S+DLQLSIS
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTS-HISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSIS 60

Query: 61  VRPIRPT----AECVFKYEEVMKPEAAGCVEALKWQAAEQIRLAAMEKAYAERVRELTKR 120
           +RPIRP     AEC+FKYEEVMKPEAA CV+ALKWQAAEQIRLAAMEKAYAERVRELTKR
Sbjct: 61  LRPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKR 120

Query: 121 EIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 169
           EIELAQTEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP
Sbjct: 121 EIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 174

[Close]
BLAST of Cp4.1LG18g09050 vs. NCBI nr
Match: gi|645268327|ref|XP_008239477.1| (PREDICTED: uncharacterized protein LOC103338070 [Prunus mume])

HSP 1 Score: 215.3 bits (547), Expect = 8.1e-53
Identity = 128/182 (70.33%), Postives = 142/182 (78.02%), Query Frame = 1 

Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFR-------SDPYEAGPGSLDLQ 60
           ME +DQKELQLLP+PH I  +SSSS  +SRPS SS+R+         D    GP SLDLQ
Sbjct: 1   MEGDDQKELQLLPSPHLI--TSSSSQRTSRPSDSSIRYHRSSKAAVQDALLEGPNSLDLQ 60

Query: 61  LSISVRPIRPTAE---CVFKYE----EVMKPEAAGCVEALKWQAAEQIRLAAMEKAYAER 120
           LSISVRPIR  +    CV        +V+KP+ AGCVEALKWQAAEQIRLAAMEKAYAER
Sbjct: 61  LSISVRPIRAASSSDRCVVSKPVCDFDVLKPKTAGCVEALKWQAAEQIRLAAMEKAYAER 120

Query: 121 VRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRF 169
           VRELT+RE+ELAQ+EF RAR MWERAREEVEKAERMKE+A  QMDSTCMEITCQSCRQRF
Sbjct: 121 VRELTRREMELAQSEFTRARHMWERAREEVEKAERMKEKAMLQMDSTCMEITCQSCRQRF 180

[Close]
BLAST of Cp4.1LG18g09050 vs. NCBI nr
Match: gi|595851690|ref|XP_007210164.1| (hypothetical protein PRUPE_ppa021164mg [Prunus persica])

HSP 1 Score: 214.2 bits (544), Expect = 1.8e-52
Identity = 127/182 (69.78%), Postives = 142/182 (78.02%), Query Frame = 1 

Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFR-------SDPYEAGPGSLDLQ 60
           ME +DQKELQLLP+PH +  +SSSS  +SRPS SS+R+         D    GP SLDLQ
Sbjct: 1   MEGDDQKELQLLPSPHLM--TSSSSQRTSRPSDSSIRYHRSSKAAVQDALLEGPNSLDLQ 60

Query: 61  LSISVRPIRPTAE---CVFKYE----EVMKPEAAGCVEALKWQAAEQIRLAAMEKAYAER 120
           LSISVRPIR  +    CV        +V+KP+ AGCVEALKWQAAEQIRLAAMEKAYAER
Sbjct: 61  LSISVRPIRAASSSDHCVVSKPVCDFDVLKPKTAGCVEALKWQAAEQIRLAAMEKAYAER 120

Query: 121 VRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRF 169
           VRELT+RE+ELAQ+EF RAR MWERAREEVEKAERMKE+A  QMDSTCMEITCQSCRQRF
Sbjct: 121 VRELTRREMELAQSEFTRARHMWERAREEVEKAERMKEKAMLQMDSTCMEITCQSCRQRF 180

[Close]
BLAST of Cp4.1LG18g09050 vs. NCBI nr
Match: gi|731426828|ref|XP_010663747.1| (PREDICTED: uncharacterized protein LOC100242196 [Vitis vinifera])

HSP 1 Score: 210.7 bits (535), Expect = 2.0e-51
Identity = 124/176 (70.45%), Postives = 145/176 (82.39%), Query Frame = 1 

Query: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRS---DPYEAGPGSLDLQLSIS 60
           ME++DQKELQLLP+PH++ASSS    MS RPS SS+R+R    DP+E GPG LDLQLSIS
Sbjct: 1   MEEDDQKELQLLPSPHSMASSS---RMSGRPSDSSLRYRGIGGDPFE-GPG-LDLQLSIS 60

Query: 61  VRPIRPTAECVF-----KYEEVMKPEAAGCVEALKWQAAEQIRLAAMEKAYAERVRELTK 120
           +RPIRP  E V      +Y +V   + A CV+ALKWQAAEQIRLAAMEKAYAERVRELT+
Sbjct: 61  LRPIRPPPEYVLAGQICEYGDVK--QEASCVDALKWQAAEQIRLAAMEKAYAERVRELTR 120

Query: 121 REIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 169
           RE+ELAQ+EF RAR MWERA EEVEKAE+MKE+A R++DSTCMEITCQ+CRQRFRP
Sbjct: 121 REMELAQSEFARARHMWERAHEEVEKAEKMKEKAMRRIDSTCMEITCQACRQRFRP 169

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g09050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IDD15_ARATH1.6e-0840.51Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1[more]
IDD16_ARATH1.5e-0634.27Protein indeterminate-domain 16 OS=Arabidopsis thaliana GN=IDD16 PE=2 SV=1[more]
IDD14_ARATH2.0e-0642.86Protein indeterminate-domain 14 OS=Arabidopsis thaliana GN=IDD14 PE=1 SV=1[more]
BLAST of Cp4.1LG18g09050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRS8_CUCSA2.5e-6987.43Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001530 PE=4 SV=1[more]
M5WPY3_PRUPE1.3e-5269.78Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021164mg PE=4 SV=1[more]
A5BWN7_VITVI1.4e-5170.45Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01360 PE=4 SV=... [more]
A0A061FYZ0_THECC2.9e-4970.62Uncharacterized protein OS=Theobroma cacao GN=TCM_014645 PE=4 SV=1[more]
B9RAF7_RICCO2.1e-4765.73Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1506160 PE=4 ... [more]
BLAST of Cp4.1LG18g09050 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G48550.11.5e-3351.76 BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger pr... [more]
AT2G01940.39.0e-1040.51 C2H2-like zinc finger protein[more]
AT1G25250.18.5e-0834.27 indeterminate(ID)-domain 16[more]
AT1G68130.11.1e-0742.86 indeterminate(ID)-domain 14[more]
BLAST of Cp4.1LG18g09050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128904|ref|XP_008464429.1|6.0e-7289.53PREDICTED: uncharacterized protein LOC103502321 [Cucumis melo][more]
gi|449440550|ref|XP_004138047.1|3.6e-6987.43PREDICTED: protein indeterminate-domain 16 [Cucumis sativus][more]
gi|645268327|ref|XP_008239477.1|8.1e-5370.33PREDICTED: uncharacterized protein LOC103338070 [Prunus mume][more]
gi|595851690|ref|XP_007210164.1|1.8e-5269.78hypothetical protein PRUPE_ppa021164mg [Prunus persica][more]
gi|731426828|ref|XP_010663747.1|2.0e-5170.45PREDICTED: uncharacterized protein LOC100242196 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009630 gravitropism
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g09050.1Cp4.1LG18g09050.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 129..156
scor
NoneNo IPR availablePANTHERPTHR34946FAMILY NOT NAMEDcoord: 1..168
score: 7.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG18g09050Cucsa.157330Cucumber (Gy14) v1cgycpeB0420
Cp4.1LG18g09050CmaCh10G000610Cucurbita maxima (Rimu)cmacpeB080
Cp4.1LG18g09050CmaCh11G000320Cucurbita maxima (Rimu)cmacpeB133
Cp4.1LG18g09050CmoCh11G000340Cucurbita moschata (Rifu)cmocpeB109
Cp4.1LG18g09050CmoCh10G000550Cucurbita moschata (Rifu)cmocpeB055
Cp4.1LG18g09050Cla019276Watermelon (97103) v1cpewmB373
Cp4.1LG18g09050Csa1G001530Cucumber (Chinese Long) v2cpecuB361
Cp4.1LG18g09050MELO3C026206Melon (DHL92) v3.5.1cpemeB328
Cp4.1LG18g09050ClCG06G017900Watermelon (Charleston Gray)cpewcgB336
Cp4.1LG18g09050CSPI01G00530Wild cucumber (PI 183967)cpecpiB361
Cp4.1LG18g09050Lsi06G016420Bottle gourd (USVL1VR-Ls)cpelsiB298
Cp4.1LG18g09050MELO3C026206.2Melon (DHL92) v3.6.1cpemedB386
Cp4.1LG18g09050CsaV3_1G000550Cucumber (Chinese Long) v3cpecucB0442
Cp4.1LG18g09050CsGy1G000540Cucumber (Gy14) v2cgybcpeB053
Cp4.1LG18g09050Carg10280Silver-seed gourdcarcpeB0508
Cp4.1LG18g09050Carg20168Silver-seed gourdcarcpeB1456
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG18g09050Cp4.1LG04g16030Cucurbita pepo (Zucchini)cpecpeB361
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG18g09050Wax gourdcpewgoB0447
Cp4.1LG18g09050Wax gourdcpewgoB0471
Cp4.1LG18g09050Cucurbita pepo (Zucchini)cpecpeB029
Cp4.1LG18g09050Cucurbita pepo (Zucchini)cpecpeB351
Cp4.1LG18g09050Cucurbita pepo (Zucchini)cpecpeB358
Cp4.1LG18g09050Cucurbita pepo (Zucchini)cpecpeB367
Cp4.1LG18g09050Cucumber (Gy14) v1cgycpeB1035
Cp4.1LG18g09050Cucurbita maxima (Rimu)cmacpeB130
Cp4.1LG18g09050Cucurbita maxima (Rimu)cmacpeB227
Cp4.1LG18g09050Cucurbita maxima (Rimu)cmacpeB274
Cp4.1LG18g09050Cucurbita maxima (Rimu)cmacpeB428
Cp4.1LG18g09050Cucurbita moschata (Rifu)cmocpeB111
Cp4.1LG18g09050Cucurbita moschata (Rifu)cmocpeB194
Cp4.1LG18g09050Cucurbita moschata (Rifu)cmocpeB236
Cp4.1LG18g09050Cucurbita moschata (Rifu)cmocpeB389
Cp4.1LG18g09050Wild cucumber (PI 183967)cpecpiB359
Cp4.1LG18g09050Cucumber (Chinese Long) v2cpecuB359
Cp4.1LG18g09050Bottle gourd (USVL1VR-Ls)cpelsiB288
Cp4.1LG18g09050Watermelon (Charleston Gray)cpewcgB332
Cp4.1LG18g09050Watermelon (Charleston Gray)cpewcgB325
Cp4.1LG18g09050Watermelon (97103) v1cpewmB352
Cp4.1LG18g09050Melon (DHL92) v3.5.1cpemeB324
Cp4.1LG18g09050Cucumber (Gy14) v2cgybcpeB049
Cp4.1LG18g09050Cucumber (Gy14) v2cgybcpeB361
Cp4.1LG18g09050Melon (DHL92) v3.6.1cpemedB381
Cp4.1LG18g09050Silver-seed gourdcarcpeB0610
Cp4.1LG18g09050Silver-seed gourdcarcpeB0695
Cp4.1LG18g09050Silver-seed gourdcarcpeB1398
Cp4.1LG18g09050Cucumber (Chinese Long) v3cpecucB0439
Cp4.1LG18g09050Cucumber (Chinese Long) v3cpecucB0457