CsaV3_1G000550 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G000550
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionprotein SHOOT GRAVITROPISM 5-like
Locationchr1 : 310653 .. 319106 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAATTATAAGGATCAGAGTGATATGTTGTATGGTCGTTGTATATAAGAATGTAAACTCCACATCGACAATCATGGAAAAGAAAGAGGGATGGGTAAAACGGTAATTTCATGGGCCATTTTGTTATATATATAGGTGCAAGTTTCTGCCATTTCATTCAGAGTCTGTTTCCATTGTACTCAAAGAAAAAAGAGAAAAGAAAAAAGAAAAAAAGAGAGAAAAAAAAAGGAAAACCAATCTCCCTTTTTATTTGTATCTTCAGAAATGGAAGATGAAGATCAGAAAGAGTTACAGCTTCTTCCAACACCACACTCCATAGCATCTTCGTCGACGTCCCACATATCGTCTCGTCCATCTGACTCCTCCTCGTTACGGTTCCGTTCCGATCCATTATTCGAAGCAGGATCAGGAGGATCGGTGGACCTACAGCTATCAATAAGTCTAAGGCCAATCCGGCCAGTAACGGCAGGGGGGGCGGAGTGCTTGTTCAAGTATGAGGAGGTGATGAAGCCTGAGGCAGCGAGCTGTGTGGACGCGCTCAAGTGGCAAGCGGCGGAGCAAATTCGGCTGGCGGCGATGGAAAAGGCGTATGCTGAGAGAGTTAGAGAACTGACAAAGAGGGAAATAGAACTGGCTCAAACGGAATTTGCTAGGGCAAGGCAGATGTGGGAAAGAGCAAGAGAAGAAGTTGAGAAAGCTGAAAGAATGAAAGAAAGAGCTACTCGTCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAATTATTATCTTTAATCATAATTTTACCTCATTAATTACCCCTTTCCATTTCCCTTAATTATCCAGAGTTTCTTTTAGTTAAATCTCTGCTTGGGTCTGTTTTCTTTTTTCTTTTTAATTAATCATTTAAATCAAGTAAACTAGAGAAGGAGAAGAAAAAAAATGGGGTTCTTAATTAGTTGGATCATTATCTTCTTTGATCATCAACAATTACACATTAAATAATTCAAAATTGGAGTTCAAATTCAATTTTGTTTTGGAAATTAAATTTCTTGGTTGTTTAGTGAATTAAGTTTGTATGATATTTTAATATATTATTAATAATTATATGGATGATTTGTTTATGACATTTTTATTTTTCCAAGTAGTGATAGTGTGAAGATCATCTTGTCTATATTTTATTAGATTGCCTTTTTTCCCCTTTTTTCTTTTTGCTTTTCTGGAAAATCTCGTTTTTGTTATCACAAATCACACGACCCTGACTGATGTGTTTACAAATAATTGAAGAACTGTTCTCTCTCTCACACTCTCTCTCTTTTCTTTTTATGTTTTTTTGTTTTTAAATTTTCCATTTAATTAAAGAAAATAATCATTCTATTTTGTGTTACACATTTAATTTATTAGTTTATGCATGTATAAAAAAGGCCATCAATCTTTGAGTCATAATAGTTATAATTAGCACAACATTTTTCTTATGAGAAATTGGTTGATATATATGATTGACAACTTTATTATTTGATTGAATAATTGACATAGTATGTGTTTATATGGTTCAAATTTACACAAATAAAGGAATTGAGTATTAGAGGAATGTTGTGAATTGATGATTTTTTTAGTTTAATCAGTCACAATCTTAAAGATGAAGAAAAAGAAACAAAAGATGGATATCTATATATAGAATGTTTAGAGTAGTACATAAATGTGATTGAAGATTGAGTAATGTTCACATAATTATTATTTGTTAATTATTTGAAGGGTTTTGAGTATAGATTATAACATTATTTTTTATTTGCAATCAATGGGATTGGTATGGATCCCATTTTGAGTAAAGAATGAGCAAGACTTTCCAACCACATACACCTTGTTTGGATGAAAATATACATGCAATGTTAAATAAACTATATGCCATTTTGACTCATTAATTTTTCTTCATAGCTTTGTATGCTTGACTGTTTGTATATGAAACTACTAACATTAGTGAAAAATACCATCCACCCATCTCCTGAATTAATCCTCATGGACCATTGCATGCATAAAATGATATATATAACTATTTTGTTCTAGCTTAATAATTAATTAATTTGTATTCTTGAGCTTTTCATCTTAAACCTAACTTTAGGGTTTGAAAACATTGAAGCTAGGAGGAAAGGACTGAAATTGTGAGTGAGAGATTGAACTTTTGGGTGATGAACTAAGCTGAATTTGGTTAGTACTAAGAAAAGATTTATAAAAATAGAGAGGAAAAGGAAGAAGAATCCTTAAAAACAAAGATATTCATATAGAGAGAGGGAATATTCATTAAGAGAGAGAGAAGGAGCACTGAAATTGAGAGAGAATAGGGGAAAAGAAGGAAAGAGTCAAAGGTCAAAAGAGAAAAGAAAATATATGTAAGGAAAGAAAGGGAGATGTGGATGGAGAGAAAGGCAAATGAATCAGAACAAAAAGTGAGAAATGGATAGGGAAGAAGAAGACAGAGAGATAGCTGTACAAATTTTGTTTTCAAGTTATTTAACTTTACCTCTCATCCTAACCAAACACCAAACATCCCCACTATCACTGTCTCCAATTCCCACCATTTTCATTCCCAATTCCCTTCTAACCCTAACCCTAAAACCACACCATATTCTATAACGTATAACTATTTCTCTTTACAAAAACCTACCCTTTAACAATGCACTTCTTCCATCTTCCTCTCTAATTGCCTTGCCACCCCCTACAGTCGGGGCAAATGGAATTTAGGGTTTCTCATCATTCCTGAGAGATTTTGACATTTTTAATTTTGATGGGCATGTGCAGAAAGGTACATGAATGATGAATAGTGATTCTCGGTTTTTTTTTTCTCTTTTATTCCTTGAATACTTGAATAAAAGTCAAGTTTAGTTTTGAATTGTGATGGGGTGTCAAGAAAAAAGGTTTACCTAGAAATGGTAATTTGGGGGGTGGTTCTGATGTTCAAAAAAGCACTCAGTTTGTCAGACTCACATCATATCAAGTCAAAGTTTTATCATTTCAGAAACTAACGACAGTTTAATTTGTCTTTTTGAGTGTTATTTAAACACAAATCTTTTCAAATGTAAAAAAACCATACATATTTTCAATATATTTCTCCTACTGTGGAAGTATATAATAATGTTTCCCAAAACCAACCTAGTTCGTTTGATGAGATTATACTCCAACTTTGATGTTTCCTACAACAATACGTAGTTAATGAGATCGTCGAAGCGGCGTATAGAGAATTATTTTATCTTTTTGTCATTGTGCTTATAATCTAGTTGCTTATTTTTTTTCTTAGTAATTTTTTCTCCTCCACTCGACCTTAATTAATTATTTAAGGATTAATGAAGCTTGTTTTTAGTTTGATTGTAAATTAGAATTTATTGGGACTGAGTAAACACAAACGTGGAAGTTAGGAATATAATGAGAAGATCATCAAAGAAGTTGAATATACAAAGGGCAATAGGTGGAGTTTGGAATATATAGCTAGGGGGAGCGTGTTGTCGCATATGTATGAAAGGAATATATATATATGTGTGTGTGTGTGTATGTATATGTATGTATAGATCAAATATGGTTTCATTAAGAGTAGTCATGATCTCCATGGTAGCACCTAGAGAGAAGGGAAGTGGAGCAGCCAATTATTTTCAGAGTAAAGTCTCTCGAAGAGGAGTGGGGGAAAAAAGGAAGTAGGACATGCCTTGTCCTAACCTTCAAACTACACAGCTGATTCCCATCATGACTAAACCTTAACATTTTGTCCTTTCACCTTGTCCGTATTATGCATCCCAACAGATTCTCGAATGATTAAAGATATGTTTGGAATGACTTATTTCTACGTAACAATGTTTTTAAACTCGATCATGAATCGATATATGATATAATGTAAATGAAATATATTCACAGGCGTTTTAACTGTTGATGAGAAGAGATATATAAACTTTTCTTTTCTTAGTCGTTTCAGCTTTTTCAAGAAACATCCATCAGAAGCAGAAGGTCGTACGGGTACAATCAACAGTGATGAATCTGGGTTTGGGTTGGACAACAATTATGGATTCGATTAAAGAGATGCTTCCAAAATTAAACATCAAAATAATTCAAACTGTCAGAAGGCAAAGGAAAAAAAATATATATACACTTTTTTATTTGCTTTAAAGGGTCTTACAAATTGGTAGCTGAAATGCTGATACAAAGTTTTTAAAGTGGTCAGGGGCTGCATATTTTTGGAGGGCTTTCTCTCTCGGAAATGGTCAAACTAATCTTAAAAAATGTTTTAATTTCCTCTTTCTTACTCTTTTTTTTATGTTTCTTTGAAATGGGTTTTTATTGTTCTTCAGTTCTTCTTGACCTTGAAAATGACACAATCTTAAAATGGGACTTCCAAATGAAATTTGATGTTTTGAAAACAAATTTGATGAAATTACTGAATCATGCTCCTGATTCTCGCCTTCGTCTTCTGTTTCTCGTTCGTGCTATTAGAACTACAACTTTTTGTTTTAATCATATCTGCTGGGTCCTTCTTCTTCCTTTCTCGGCCTCTTGAATAAAAAAATGAAAGTTAAAATGTGAATCAAAGCAAGACAAAGGAGCCAGAGGAAGAAGCAAAGATCGAGACCAAGGAGTGAGAGAAGAAGAAGCGACAGGAAGAATATGAATGGATCGCAAGAACTCATGGGTGCGTTTGACCCTTACACACGTCTTGGATTCAAATGAGTACTTTCACATGTAACTTAGCATGTATCCATTTTTCATTCATTTTGTAATCTTGAGTCAAATTAAACAATTTTCCAAAAGATATGGTGTGAGAGAGTTTGGAAAATGTTAGTAACCAACCTAAAAAGATTTTCAGCTTTCACAACTAGCAATTTTTGTTGGAGAATGTTAGATGTGCAATAAAAAGAAGTTAAAAAAAAAACTATTTAAATTTCTCAAAAAAAAGAAGTTATGGTTGGAAAAGATAAAAGTATTTGAAGGTTAATTTTGACCATTTCTCCCGTTGTTTATTCATAGACCGTGGCGGTGTGTGTGGAGCTTATGATGGTGAGGTCAAGGATGGTAAATTTCCAGATATGACAACCTTTTACCATTCTCTTTCTAGGTAAGAGAGAGAGAGAATTAGGGAGAGAAAGTGATGAAAGATTTGATGGTCTTGTCATATCAAGGCCCAATGAAGGGAAAGGTAGCTTTCATTTGAAGCTATAAAAGTTGAAAAATCAGGTATAATGGTTATTGCATAGTGGGACTCAGCTCCTTTGGAAGTCAGAAACTTTAGCATGTGGAATCGAGATTCAATTTAATCAGATGCAATTTGTGGTAACATATATAACAAAATTGGGATACTTCATGATCCAATCTTTCTTTCCATCTTTCCTGTTTGGCCAATCTCATAAATACCAAAAAATCCCAACACTGAATTATATACCTCCCCTTTTTGGTTGTAATAATTGGAATTCCAAACACTTTCCTTTTCTCATTCTACTCTTACCTCACTTGTGACTTGTCCTCTCTGGAAGGACGACATCCTAACTGTAGATTTCTCGACGGATGATCAATTGTAGGCGGTCGCCGTAATCTTTCTCTGATATGTTTCAGGTTCTTCAACCTATGATGGATGCCCTGTTTCTTAATGCAACTTCAAACAGAATCATTCTGTGTGTAAGAATACTGGGTTTCTTACTTGTTTACTACAGTGTTCTTTCGTGGTTGCATTCGACAACTATTTTGAATTGTATTTCATTACTTGAGTCCAAATTCAATACTAGTTTTTCAGTTGTTGATGGAAGTACTTTTATCAATCTCATCAAACAGAGGAAGTGATACATAATTGGATGTCATTGATTCCCTGGCGTTCAAAATGAAGACTTCAAGTTCGTAAAAGACCTGAAAAGAAGCGGTGAGAGCCACTAAAAATAGGGTCGTCGTGGGATCTACCTAAAGAAAAAAGAGATAATAGTTAAAAGAAAAAAGGCATTGTTTCACGAATCATTGGATTTGGAATGATTCTCAGTTTCTCATTCCCATTTCGAAACTGTAAGCATGGCCCGAGTGTTGAAAGAGATGAAATGACCAGAAAGTAGAAGAGACAACAAAGCATAATTTAAGTAGAGATGGATCTCTTACAACATTGTTTATAAGAAAAAGCGACCAGAAACTAACAAAACAAACTAAAGGAGATGGAAGGGGAAAAATGTACATAGGGAGAAACATAAAATGGTGAAGTGAAAATGGATTAAATTATTCATATTAGTATGAGCGTCTTCCATCTCCTTCTGTGATCACATCTTTGAAAGCACCACCACTAGGAATCATAGGCAGCACATGTTCTTGATGCGGTACAATCACATCCAACATGTAAGGCCCTTCTGTCTCCAGCATCTTCTTCATTGCTGCTCTTAACTCAGCCTTCTTTGTCACGCGTGCAGCAGGGATCCCACACGCCTCTGCAAACTTCAACATGTTGGGGAATATCTCAGATTCGTTCGATGGATTTCCCAGGTAAGTGTGAGCTCTGTTGGCTTTGTAGAACCGATCCTCCCACTGCACAACCATGCCTAGATGCTGGTTGTTCAGCAGCAGGATCTTCACTGGAAGTTTCTCGACACTGATTGTTGCTAGTTCTTGGACATTCATGATAAAACTCCCGTCCCCGTCGATGTCTACAACCACTGCACCAGGATTTGCTACTGCTGCCCCCATGGCTGCTGGCAGTCCAAAACCCATTGCACCTAATCCACCGGAGGTTAACCACTGGCGTGGCTTCTTGTACTTGTAGAACTGAGCTGCCCACATCTGATGCTGCCCCACCCCTGTGCTAACGATCGCCTCGCCGTTGGTTAGCTCATCAAGGAGTTGAATTGCATATTGTGGAGGAATGGCCTCATCAAATGTTTTGAAAGTCAATGGATATTTTGATTTCTGCTCATTCAGCTCCTCTCTCCAAGCAGAGAAATCAAAGTGAAGCATATGAGCTTTCTCAAGTAAACGATTCATTCCCTGTAAGGCTAACTTCACATCGCCACAGACCGAAACATGGGGCTGCTTGTTTTTCCCAATCTCAGCTGAATCAATATCGATATGAACGATTTTGGCACGGCTCGCAAAAGCCTCAAGCTTCCCTGTCACACGGTCATCGAATCTCACTCCAAATGCAAGCAAGAGGTCAGATTTATCTACAGCATAGTTTGCATAAACTGTCCCATGCATGCCCAGCATTTGCAGAGATAAATCATCAGAGCAAGGATAAGCCCCAAGACCCATCAGAGTACTGGCCACCGGAATCCCGGTCAGCTTGACAAACCTCCGCAGCTCCTCCGAGGAATTCAAACACCCTCCACCCACATAAAGAACAGGCTTCTTAGATTCAGAGATCAATCGCAAAATTTGCTCCAAGTGGGAATCAGTGGGAGGTTTAGGTAACCTAGACAAGTAACCAGGTAATTTCATGGGTTGATTCCAATTAGGAACCGCGAGCTGTTGCTGAACGTCCTTAGGAATATCAATAAGAACAGGACCAGGTCGACCAGAACTCGCGAGGAAAAATGCCTCGCTCACAATCCTAGGAATGTCATCTACATCAAGAACCAGATAATTGTGCTTTGTAATAGAGCGAGTTACCTCAACAATGGGAGTTTCCTGAAAAGCATCTGTACCAATCATTCTCCTAGGAACTTGCCCTGTAATGGCCACCAATGGAACGCTATCGAGAAGAGCATCTGCAAGTCCGCTGACAAGATTAGTAGCACCGGGACCTGAAGTTGCAATGCAAACGCCAGGGAGGCCAGAGGAACGAGCGTAACCCTCGGCAGCAAATACGCCACCCTGCTCGTGGCGGGGGAGAACGTTACGGATAATTGAAGAGCGGGTGAGGGCCTGATGGATCTCCATTGAAGCGCCACCGGGGTAAGCGAAGACATTAGTGACGCCTTGGCGCTCGAGAGCTTCAACGAGGATATCGGCGCCTTTTCTCGGTTCATCAGCGGCGAATCGGGAGGCGAAAATCTCAGAGCTGGTGATGGAGGAAGTTTCGACGGTAGCGGCGGAGGCGGCAGTGGAGGAGGGTTTAGGGGAAGGATTGGAGAGAGAGGTTGAGCAGATGCGGAGAGAGCGGCGGAAAGTGGGGTTGTGAGGAAGAGAGGAAAATGAAAGATCGAATCTGGAGAAGGGTTTGGTAAGGTTGAAGGAGGGGGATTTGGAGAAGGATTTGGAGGCGCATGGTGAAGCAGCCGCCGCCATTGATGACATGGTGAAGGAAGAAGGAGGAGATGAGAAAGCAGGAGGGAAATGGTGTGGAAAGTAGTGGTTCTCAGTGATATAAGGATTTATAGTTAAATTATTTAACCAAATTTTATTACCTCTACTTACCCTTCGAAGCCATTAGTCAATTCCACAAAAAGTTACCATTTTCATTTATTCTTATTTTTTTATAATTAAAAAGAAAATTAACGGTTCTC

mRNA sequence

ATGGAAGATGAAGATCAGAAAGAGTTACAGCTTCTTCCAACACCACACTCCATAGCATCTTCGTCGACGTCCCACATATCGTCTCGTCCATCTGACTCCTCCTCGTTACGGTTCCGTTCCGATCCATTATTCGAAGCAGGATCAGGAGGATCGGTGGACCTACAGCTATCAATAAGTCTAAGGCCAATCCGGCCAGTAACGGCAGGGGGGGCGGAGTGCTTGTTCAAGTATGAGGAGGTGATGAAGCCTGAGGCAGCGAGCTGTGTGGACGCGCTCAAGTGGCAAGCGGCGGAGCAAATTCGGCTGGCGGCGATGGAAAAGGCGTATGCTGAGAGAGTTAGAGAACTGACAAAGAGGGAAATAGAACTGGCTCAAACGGAATTTGCTAGGGCAAGGCAGATGTGGGAAAGAGCAAGAGAAGAAGTTGAGAAAGCTGAAAGAATGAAAGAAAGAGCTACTCGTCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGTCGTTTCAGCTTTTTCAAGAAACATCCATCAGAAGCAGAAGGTCGTACGGGTACAATCAACAGTGATGAATCTGGGTTTGGGTTGGACAACAATTATGGATTCGATTAA

Coding sequence (CDS)

ATGGAAGATGAAGATCAGAAAGAGTTACAGCTTCTTCCAACACCACACTCCATAGCATCTTCGTCGACGTCCCACATATCGTCTCGTCCATCTGACTCCTCCTCGTTACGGTTCCGTTCCGATCCATTATTCGAAGCAGGATCAGGAGGATCGGTGGACCTACAGCTATCAATAAGTCTAAGGCCAATCCGGCCAGTAACGGCAGGGGGGGCGGAGTGCTTGTTCAAGTATGAGGAGGTGATGAAGCCTGAGGCAGCGAGCTGTGTGGACGCGCTCAAGTGGCAAGCGGCGGAGCAAATTCGGCTGGCGGCGATGGAAAAGGCGTATGCTGAGAGAGTTAGAGAACTGACAAAGAGGGAAATAGAACTGGCTCAAACGGAATTTGCTAGGGCAAGGCAGATGTGGGAAAGAGCAAGAGAAGAAGTTGAGAAAGCTGAAAGAATGAAAGAAAGAGCTACTCGTCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGTCGTTTCAGCTTTTTCAAGAAACATCCATCAGAAGCAGAAGGTCGTACGGGTACAATCAACAGTGATGAATCTGGGTTTGGGTTGGACAACAATTATGGATTCGATTAA

Protein sequence

MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISLRPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQSRFSFFKKHPSEAEGRTGTINSDESGFGLDNNYGFD
Homology
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BLAST of CsaV3_1G000550 vs. NCBI nr
Match: XP_004138047.1 (PREDICTED: protein indeterminate-domain 16 [Cucumis sativus] >KGN63482.1 hypothetical protein Csa_1G001530 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 2.9e-56
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRXXXXXX 120
           RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRXXXXXX
Sbjct: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 171
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 170

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BLAST of CsaV3_1G000550 vs. NCBI nr
Match: XP_008464429.1 (PREDICTED: protein indeterminate-domain 16 [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 4.9e-48
Identity = 164/170 (96.47%), Postives = 166/170 (97.65%), Query Frame = 0 

Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSS SH+SSRPSD SSLRFRSDP FEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSS-SHMSSRPSD-SSLRFRSDP-FEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRXXXXXX 120
           RPIRPVTAGG ECLFKYEEVMKPEAASCV+ALKWQAAEQIRLAAMEKAYAERVRXXXXXX
Sbjct: 61  RPIRPVTAGG-ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 171
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 166

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BLAST of CsaV3_1G000550 vs. NCBI nr
Match: XP_022921773.1 (protein indeterminate-domain 16-like [Cucurbita moschata])

HSP 1 Score: 174.1 bits (440), Expect = 5.0e-40
Identity = 151/171 (88.30%), Postives = 161/171 (94.15%), Query Frame = 0 

Query: 1   MEDEDQKELQLLPTPHSIA-SSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSIS 60
           MEDEDQKELQLLPTPH+IA SSS+SH+SSRPS +SS+RFRSDP +EAG  GS+DLQLSIS
Sbjct: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPS-ASSMRFRSDP-YEAGP-GSLDLQLSIS 60

Query: 61  LRPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRXXXXX 120
           +RPIRP     AEC+FKYEEVMKPEAASCV+ALKWQAAEQIRLAAMEKAYAERVRXXXXX
Sbjct: 61  VRPIRPT----AECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 171
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 164

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BLAST of CsaV3_1G000550 vs. NCBI nr
Match: XP_023516632.1 (protein indeterminate-domain 16-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39
Identity = 150/171 (87.72%), Postives = 160/171 (93.57%), Query Frame = 0 

Query: 1   MEDEDQKELQLLPTPHSIA-SSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSIS 60
           MEDEDQKELQLLPTPH+IA SSS+SH+SSRPS +SS+RFRSDP +EAG  GS+DLQLSIS
Sbjct: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPS-ASSMRFRSDP-YEAGP-GSLDLQLSIS 60

Query: 61  LRPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRXXXXX 120
           +RPIRP     AEC+FKYEEVMKPEAA CV+ALKWQAAEQIRLAAMEKAYAERVRXXXXX
Sbjct: 61  VRPIRPT----AECVFKYEEVMKPEAAGCVEALKWQAAEQIRLAAMEKAYAERVRXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 171
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 164

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BLAST of CsaV3_1G000550 vs. NCBI nr
Match: XP_023531717.1 (protein indeterminate-domain 14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.2 bits (435), Expect = 1.9e-39
Identity = 146/170 (85.88%), Postives = 147/170 (86.47%), Query Frame = 0 

Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSS    SSRPSD SSLRFRSD L E G  GSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSS----SSRPSD-SSLRFRSD-LLEPGQ-GSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRXXXXXX 120
           RPIRP  A GAECL KYEEVMKPEAASCV+ALKWQA EQIRLAAMEKAYAERVR  XXXX
Sbjct: 61  RPIRP--AAGAECLLKYEEVMKPEAASCVEALKWQAGEQIRLAAMEKAYAERVRELXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 171
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      TCMEITCQSCRQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGQVDSTCMEITCQSCRQ 161

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BLAST of CsaV3_1G000550 vs. TAIR10
Match: AT3G48550.1 (BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3))

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-09
Identity = 56/169 (33.14%), Postives = 65/169 (38.46%), Query Frame = 0 

Query: 2   EDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISLR 61
           + +  KELQLLP+P S  S    H   R                      +DL+LSISL 
Sbjct: 4   QQDHHKELQLLPSPPSTESPVRKH---RXXXXXXXXXXXXXXXXXXXXXDLDLKLSISLS 63

Query: 62  PIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRXXXXXXX 121
            I              EE+  P     V+ALKWQAAEQIRLAA+EKAYAERVR       
Sbjct: 64  SISTA-----------EEL--PNGG--VEALKWQAAEQIRLAAIEKAYAERVRELTRREM 123

Query: 122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 171
                                                 C+EITC SCRQ
Sbjct: 124 EMAQSEFARARVMWQKAREEVERAERLKERSMTKIDTACLEITCHSCRQ 154

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BLAST of CsaV3_1G000550 vs. TrEMBL
Match: tr|A0A0A0LRS8|A0A0A0LRS8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001530 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.9e-56
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRXXXXXX 120
           RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRXXXXXX
Sbjct: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 171
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 170

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BLAST of CsaV3_1G000550 vs. TrEMBL
Match: tr|A0A1S3CN02|A0A1S3CN02_CUCME (protein indeterminate-domain 16 OS=Cucumis melo OX=3656 GN=LOC103502321 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.3e-48
Identity = 164/170 (96.47%), Postives = 166/170 (97.65%), Query Frame = 0 

Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSS SH+SSRPSD SSLRFRSDP FEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSS-SHMSSRPSD-SSLRFRSDP-FEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRXXXXXX 120
           RPIRPVTAGG ECLFKYEEVMKPEAASCV+ALKWQAAEQIRLAAMEKAYAERVRXXXXXX
Sbjct: 61  RPIRPVTAGG-ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 171
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 166

[Close]
BLAST of CsaV3_1G000550 vs. TrEMBL
Match: tr|A5BWN7|A5BWN7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_17s0000g01360 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.7e-25
Identity = 130/177 (73.45%), Postives = 142/177 (80.23%), Query Frame = 0 

Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFR---SDPLFEAGSGGSVDLQLS 60
           ME++DQKELQLLP+PHS+ASS  S +S RPSD SSLR+R    DP      G  +DLQLS
Sbjct: 1   MEEDDQKELQLLPSPHSMASS--SRMSGRPSD-SSLRYRGIGGDPF----EGPGLDLQLS 60

Query: 61  ISLRPIRP----VTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERV 120
           ISLRPIRP    V AG    + +Y +V   + ASCVDALKWQAAEQIRLAAMEKAYAERV
Sbjct: 61  ISLRPIRPPPEYVLAGQ---ICEYGDV--KQEASCVDALKWQAAEQIRLAAMEKAYAERV 120

Query: 121 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 171
           R XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  TCMEITCQ+CRQ
Sbjct: 121 REXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSTCMEITCQACRQ 165

[Close]
BLAST of CsaV3_1G000550 vs. TrEMBL
Match: tr|A0A2N9IE70|A0A2N9IE70_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50457 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.6e-24
Identity = 124/178 (69.66%), Postives = 142/178 (79.78%), Query Frame = 0 

Query: 1   MEDEDQKELQLLPTPHSIASSS--TSHISSRPSDSSSLRFR--SDPLFEAGSGGSVDLQL 60
           MED DQ ELQLLPTP+S+ SSS    H+SSRP DSSS R+R  S  + +     ++DLQL
Sbjct: 1   MEDNDQTELQLLPTPNSVPSSSXXXXHMSSRPLDSSSFRYRSSSSTVSDPFETPALDLQL 60

Query: 61  SISLRPIRPVT---AGGAECLFKYEEVMKPE-AASCVDALKWQAAEQIRLAAMEKAYAER 120
           SIS+RPIR  +     G  C  +Y++ +KPE + +CV+ALKW AAEQIRLAA+EKAYAER
Sbjct: 61  SISVRPIRQTSDCVLAGPIC--RYDDEVKPETSTTCVEALKWHAAEQIRLAAIEKAYAER 120

Query: 121 VRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 171
           VR  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ
Sbjct: 121 VRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 176

[Close]
BLAST of CsaV3_1G000550 vs. TrEMBL
Match: tr|M5WPY3|M5WPY3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021164mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 127/180 (70.56%), Postives = 143/180 (79.44%), Query Frame = 0 

Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRS------DPLFEAGSGGSVDL 60
           ME +DQKELQLLP+PH + +SS+S  +SRPSDSS    RS      D L E  +  S+DL
Sbjct: 1   MEGDDQKELQLLPSPH-LMTSSSSQRTSRPSDSSIRYHRSSKAAVQDALLEGPN--SLDL 60

Query: 61  QLSISLRPIRPVTAGGAECLFKYE----EVMKPEAASCVDALKWQAAEQIRLAAMEKAYA 120
           QLSIS+RPIR  ++    C+        +V+KP+ A CV+ALKWQAAEQIRLAAMEKAYA
Sbjct: 61  QLSISVRPIRAASSSD-HCVVSKPVCDFDVLKPKTAGCVEALKWQAAEQIRLAAMEKAYA 120

Query: 121 ERVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 171
           ERVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ
Sbjct: 121 ERVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCMEITCQSCRQ 176

The following BLAST results are available for this feature:
BLAST of CsaV3_1G000550 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138047.12.9e-56100.00PREDICTED: protein indeterminate-domain 16 [Cucumis sativus] >KGN63482.1 hypothe... [more]
XP_008464429.14.9e-4896.47PREDICTED: protein indeterminate-domain 16 [Cucumis melo][more]
XP_022921773.15.0e-4088.30protein indeterminate-domain 16-like [Cucurbita moschata][more]
XP_023516632.11.4e-3987.72protein indeterminate-domain 16-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023531717.11.9e-3985.88protein indeterminate-domain 14-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_1G000550 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G48550.15.5e-0933.14BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:... [more]
BLAST of CsaV3_1G000550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G000550 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRS8|A0A0A0LRS8_CUCSA1.9e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001530 PE=4 SV=1[more]
tr|A0A1S3CN02|A0A1S3CN02_CUCME3.3e-4896.47protein indeterminate-domain 16 OS=Cucumis melo OX=3656 GN=LOC103502321 PE=4 SV=... [more]
tr|A5BWN7|A5BWN7_VITVI8.7e-2573.45Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_17s0000g01360 PE=4 SV=... [more]
tr|A0A2N9IE70|A0A2N9IE70_FAGSY5.6e-2469.66Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50457 PE=4 SV=1[more]
tr|M5WPY3|M5WPY3_PRUPE1.6e-2370.56Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021164mg PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009630gravitropism
Vocabulary: INTERPRO
TermDefinition
IPR039288SGR5
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009630 gravitropism
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G000550.1CsaV3_1G000550.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 114..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availablePANTHERPTHR34946:SF2SUBFAMILY NOT NAMEDcoord: 2..170
IPR039288Protein SHOOT GRAVITROPISM 5PANTHERPTHR34946FAMILY NOT NAMEDcoord: 2..170

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G000550CSPI01G00530Wild cucumber (PI 183967)cpicucB001
CsaV3_1G000550Cucsa.157330Cucumber (Gy14) v1cgycucB236
CsaV3_1G000550CmaCh10G000610Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G000550CmaCh11G000320Cucurbita maxima (Rimu)cmacucB0100
CsaV3_1G000550CmoCh11G000340Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G000550CmoCh10G000550Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G000550Cp4.1LG18g09050Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G000550CsGy1G000540Cucumber (Gy14) v2cgybcucB002
CsaV3_1G000550Carg10280Silver-seed gourdcarcucB0395
CsaV3_1G000550Carg20168Silver-seed gourdcarcucB1095
CsaV3_1G000550Cla019276Watermelon (97103) v1cucwmB105
CsaV3_1G000550MELO3C026206Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G000550ClCG06G017900Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G000550Lsi06G016420Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G000550MELO3C026206.2Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G000550Cla97C06G127630Watermelon (97103) v2cucwmbB076
CsaV3_1G000550Bhi02G000393Wax gourdcucwgoB086
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G000550Cucumber (Chinese Long) v3cuccucB003
CsaV3_1G000550Cucumber (Chinese Long) v3cuccucB017
CsaV3_1G000550Silver-seed gourdcarcucB0466
CsaV3_1G000550Silver-seed gourdcarcucB1050
CsaV3_1G000550Cucumber (Gy14) v2cgybcucB010
CsaV3_1G000550Cucumber (Gy14) v2cgybcucB101
CsaV3_1G000550Cucumber (Gy14) v1cgycucB593
CsaV3_1G000550Cucurbita maxima (Rimu)cmacucB0117
CsaV3_1G000550Cucurbita maxima (Rimu)cmacucB0256
CsaV3_1G000550Cucurbita maxima (Rimu)cmacucB0273
CsaV3_1G000550Cucurbita maxima (Rimu)cmacucB0472
CsaV3_1G000550Cucurbita moschata (Rifu)cmocucB0243
CsaV3_1G000550Cucurbita moschata (Rifu)cmocucB0094
CsaV3_1G000550Cucurbita moschata (Rifu)cmocucB0261
CsaV3_1G000550Cucurbita moschata (Rifu)cmocucB0470
CsaV3_1G000550Cucurbita pepo (Zucchini)cpecucB0029
CsaV3_1G000550Cucurbita pepo (Zucchini)cpecucB0630
CsaV3_1G000550Cucurbita pepo (Zucchini)cpecucB0739
CsaV3_1G000550Cucurbita pepo (Zucchini)cpecucB0804
CsaV3_1G000550Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G000550Wild cucumber (PI 183967)cpicucB014
CsaV3_1G000550Wild cucumber (PI 183967)cpicucB126
CsaV3_1G000550Bottle gourd (USVL1VR-Ls)cuclsiB039
CsaV3_1G000550Melon (DHL92) v3.5.1cucmeB019
CsaV3_1G000550Melon (DHL92) v3.5.1cucmeB084
CsaV3_1G000550Melon (DHL92) v3.6.1cucmedB017
CsaV3_1G000550Melon (DHL92) v3.6.1cucmedB077
CsaV3_1G000550Watermelon (Charleston Gray)cucwcgB056
CsaV3_1G000550Watermelon (Charleston Gray)cucwcgB072
CsaV3_1G000550Watermelon (97103) v1cucwmB032
CsaV3_1G000550Watermelon (97103) v2cucwmbB061
CsaV3_1G000550Watermelon (97103) v2cucwmbB048
CsaV3_1G000550Wax gourdcucwgoB015
CsaV3_1G000550Wax gourdcucwgoB062
CsaV3_1G000550Wax gourdcucwgoB087