ClCG06G017900 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G017900
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Nucleic acid binding protein, putative
Location	CG_Chr06 : 30979089 .. 30979604 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTTCTTCCGACGCCTCACTCCATAGCGTCATCGTCATCCCACATGTCGTCCCGCCCATCCGACTCGTCGTTACGTTTCCGGTCCGATCCATTCGAAGCGGCTGGTCCAGGATCGGTGGACTTGCAGCTATCAATAAGCCTGAGGCCAATCCGACCGGCAGCGGCGGGGGCGGAGTGCTTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGAGCTGTGTGGAGGCGCTGAAGTGGCAAGCGGCGGAGCAAATTAGGCTGGCGGCGATGGAAAAGGCGTATGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAAATAGAATTGGCGCAAACGGAATTTGCTAGGGCTCGACAGATGTGGGAAAGGGCAAGAGAAGAAGTTGAAAAAGCGGAACGAATGAAAGAAAGAGCCACTCGCCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAA

mRNA sequence

ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTTCTTCCGACGCCTCACTCCATAGCGTCATCGTCATCCCACATGTCGTCCCGCCCATCCGACTCGTCGTTACGTTTCCGGTCCGATCCATTCGAAGCGGCTGGTCCAGGATCGGTGGACTTGCAGCTATCAATAAGCCTGAGGCCAATCCGACCGGCAGCGGCGGGGGCGGAGTGCTTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGAGCTGTGTGGAGGCGCTGAAGTGGCAAGCGGCGGAGCAAATTAGGCTGGCGGCGATGGAAAAGGCGTATGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAAATAGAATTGGCGCAAACGGAATTTGCTAGGGCTCGACAGATGTGGGAAAGGGCAAGAGAAGAAGTTGAAAAAGCGGAACGAATGAAAGAAAGAGCCACTCGCCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAA

Coding sequence (CDS)

ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTTCTTCCGACGCCTCACTCCATAGCGTCATCGTCATCCCACATGTCGTCCCGCCCATCCGACTCGTCGTTACGTTTCCGGTCCGATCCATTCGAAGCGGCTGGTCCAGGATCGGTGGACTTGCAGCTATCAATAAGCCTGAGGCCAATCCGACCGGCAGCGGCGGGGGCGGAGTGCTTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGAGCTGTGTGGAGGCGCTGAAGTGGCAAGCGGCGGAGCAAATTAGGCTGGCGGCGATGGAAAAGGCGTATGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAAATAGAATTGGCGCAAACGGAATTTGCTAGGGCTCGACAGATGTGGGAAAGGGCAAGAGAAGAAGTTGAAAAAGCGGAACGAATGAAAGAAAGAGCCACTCGCCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAA

Protein sequence

MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

Homology

[Close]

BLAST of ClCG06G017900 vs. Swiss-Prot
Match: IDD15_ARATH (Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-12
Identity = 33/79 (41.77%), Postives = 59/79 (74.68%), Query Frame = 1


Query: 92  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 151
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 335 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 394

Query: 152 QMDSTCMEITCQSCRQRFR 170
           ++ ST M++TCQ+C+ +F+
Sbjct: 395 KISSTIMQVTCQTCKGQFQ 413

[Close]

BLAST of ClCG06G017900 vs. Swiss-Prot
Match: IDD16_ARATH (Protein indeterminate-domain 16 OS=Arabidopsis thaliana GN=IDD16 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10
Identity = 44/142 (30.99%), Postives = 75/142 (52.82%), Query Frame = 1


Query: 28  RPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEA 87
           RPS+      + PF A+      L+L +S+   R +A       ++ E  +         
Sbjct: 212 RPSNQHSPAFAYPFNASSAPFESLELQLSIGMARTSAQA-----RHNEKRETSLT----- 271

Query: 88  LKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKER 147
            K +A E+ R A       E  R+  KR+IE+A+ +F +A+++ E A+ E+EKA  ++E 
Sbjct: 272 -KERANEEARKA-------EETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVVREE 331

Query: 148 ATRQMDSTCMEITCQSCRQRFR 170
           A +++++T MEITC SC+Q F+
Sbjct: 332 AIKRINATMMEITCHSCKQLFQ 335

[Close]

BLAST of ClCG06G017900 vs. Swiss-Prot
Match: IDD14_ARATH (Protein indeterminate-domain 14 OS=Arabidopsis thaliana GN=IDD14 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-09
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 107 ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 166
           E  R  TKR+IE+A+ EFA A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q
Sbjct: 315 EEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRRISATMMQITCHNCKQ 374

Query: 167 RFR 170
            F+
Sbjct: 375 HFQ 377

[Close]

BLAST of ClCG06G017900 vs. TrEMBL
Match: A0A0A0LRS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001530 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 1.9e-80
Identity = 164/175 (93.71%), Postives = 166/175 (94.86%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSS-SHMSSRPSDSS-LRFRSDP-FEAAGPGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSS SH+SSRPSDSS LRFRSDP FEA   GSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60

Query: 61  RPIRPAAAG-AECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRP  AG AECLFKYEEVMKPEAASCV+ALKWQAAEQIRLAAMEKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 172
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175

[Close]

BLAST of ClCG06G017900 vs. TrEMBL
Match: M5WPY3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021164mg PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.7e-60
Identity = 125/180 (69.44%), Postives = 143/180 (79.44%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAA------GPGSVDLQLS 60
           ME +DQKELQLLP+PH + SSSS  +SRPSDSS+R+      A       GP S+DLQLS
Sbjct: 1   MEGDDQKELQLLPSPHLMTSSSSQRTSRPSDSSIRYHRSSKAAVQDALLEGPNSLDLQLS 60

Query: 61  ISLRPIRPAAAGAECLFKYE----EVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVR 120
           IS+RPIR A++   C+        +V+KP+ A CVEALKWQAAEQIRLAAMEKAYAERVR
Sbjct: 61  ISVRPIRAASSSDHCVVSKPVCDFDVLKPKTAGCVEALKWQAAEQIRLAAMEKAYAERVR 120

Query: 121 ELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 171
           ELT+RE+ELAQ+EF RAR MWERAREEVEKAERMKE+A  QMDSTCMEITCQSCRQRFRP
Sbjct: 121 ELTRREMELAQSEFTRARHMWERAREEVEKAERMKEKAMLQMDSTCMEITCQSCRQRFRP 180

[Close]

BLAST of ClCG06G017900 vs. TrEMBL
Match: A5BWN7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01360 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-59
Identity = 131/177 (74.01%), Postives = 149/177 (84.18%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRS---DPFEAAGPGSVDLQLSISL 60
           ME++DQKELQLLP+PHS+ASSS  MS RPSDSSLR+R    DPFE  GPG +DLQLSISL
Sbjct: 1   MEEDDQKELQLLPSPHSMASSS-RMSGRPSDSSLRYRGIGGDPFE--GPG-LDLQLSISL 60

Query: 61  RPIRP----AAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELT 120
           RPIRP      AG  C  +Y +V   + ASCV+ALKWQAAEQIRLAAMEKAYAERVRELT
Sbjct: 61  RPIRPPPEYVLAGQIC--EYGDVK--QEASCVDALKWQAAEQIRLAAMEKAYAERVRELT 120

Query: 121 KREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 171
           +RE+ELAQ+EFARAR MWERA EEVEKAE+MKE+A R++DSTCMEITCQ+CRQRFRP
Sbjct: 121 RREMELAQSEFARARHMWERAHEEVEKAEKMKEKAMRRIDSTCMEITCQACRQRFRP 169

[Close]

BLAST of ClCG06G017900 vs. TrEMBL
Match: A0A061FYZ0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014645 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-55
Identity = 130/178 (73.03%), Postives = 145/178 (81.46%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRS----DPFEAAGPGSVDLQLSIS 60
           ME+EDQKELQLLPT  SIASSS  MSSR SDSSLR+RS    D +E  GP S+DLQLSIS
Sbjct: 1   MEEEDQKELQLLPTSLSIASSSQ-MSSRASDSSLRYRSTTTSDQYE--GP-SLDLQLSIS 60

Query: 61  LRPIRPAA----AGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVREL 120
           LRPI+  +    AG  C F   +       SCVE+LKWQAAEQIRLAA+EKAYAERVR+L
Sbjct: 61  LRPIQQPSNCVIAGPICDFGDVKA----DTSCVESLKWQAAEQIRLAAIEKAYAERVRDL 120

Query: 121 TKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 171
           TKRE+ELAQ+EFARAR MW+RAREEVEKAERMKERATR++DSTCMEITCQSCRQRFRP
Sbjct: 121 TKREMELAQSEFARARHMWQRAREEVEKAERMKERATRKIDSTCMEITCQSCRQRFRP 170

[Close]

BLAST of ClCG06G017900 vs. TrEMBL
Match: A0A068V2G8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042525001 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 8.3e-52
Identity = 118/174 (67.82%), Postives = 137/174 (78.74%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPS-DSSLRFRS--DPFEAAGPGSVDLQLSISL 60
           ME+ +QKELQLLP       SSS+ S+ PS +SS++ RS  DPFE  GP S+DLQLSIS 
Sbjct: 1   MEEGNQKELQLLPADSQTTPSSSNASAWPSSESSIKLRSTTDPFE--GP-SLDLQLSISF 60

Query: 61  RPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREI 120
           R IR  A   +       +MK + +  VEALKWQAAE+IRLAAMEKAYAERVREL++RE+
Sbjct: 61  RTIRTGATAKDYTNNDNLMMKSDPSGRVEALKWQAAEEIRLAAMEKAYAERVRELSRREM 120

Query: 121 ELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 172
           ELAQTEFARAR MWERAR EVEKAE++KERATRQMDSTCMEITCQSCRQ+FRPS
Sbjct: 121 ELAQTEFARARNMWERARGEVEKAEKLKERATRQMDSTCMEITCQSCRQKFRPS 171

[Close]

BLAST of ClCG06G017900 vs. TAIR10
Match: AT3G48550.1 (AT3G48550.1 BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3))

HSP 1 Score: 155.2 bits (391), Expect = 3.6e-38
Identity = 91/171 (53.22%), Postives = 116/171 (67.84%), Query Frame = 1


Query: 2   EDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGP--GSVDLQLSISLRP 61
           + +  KELQLLP+P S  + S     RP+  +    ++   ++      +DL+LSISL  
Sbjct: 4   QQDHHKELQLLPSPPS--TESPVRKHRPTVITTDHHNNHHRSSSMIHHDLDLKLSISLSS 63

Query: 62  IRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIEL 121
           I  A          EE+  P     VEALKWQAAEQIRLAA+EKAYAERVRELT+RE+E+
Sbjct: 64  ISTA----------EEL--PNGG--VEALKWQAAEQIRLAAIEKAYAERVRELTRREMEM 123

Query: 122 AQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 171
           AQ+EFARAR MW++AREEVE+AER+KER+  ++D+ C+EITC SCRQRFRP
Sbjct: 124 AQSEFARARVMWQKAREEVERAERLKERSMTKIDTACLEITCHSCRQRFRP 158

[Close]

BLAST of ClCG06G017900 vs. TAIR10
Match: AT2G01940.3 (AT2G01940.3 C2H2-like zinc finger protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 33/79 (41.77%), Postives = 59/79 (74.68%), Query Frame = 1


Query: 92  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 151
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 336 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 395

Query: 152 QMDSTCMEITCQSCRQRFR 170
           ++ ST M++TCQ+C+ +F+
Sbjct: 396 KISSTIMQVTCQTCKGQFQ 414

[Close]

BLAST of ClCG06G017900 vs. TAIR10
Match: AT1G25250.1 (AT1G25250.1 indeterminate(ID)-domain 16)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 44/142 (30.99%), Postives = 75/142 (52.82%), Query Frame = 1


Query: 28  RPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEA 87
           RPS+      + PF A+      L+L +S+   R +A       ++ E  +         
Sbjct: 212 RPSNQHSPAFAYPFNASSAPFESLELQLSIGMARTSAQA-----RHNEKRETSLT----- 271

Query: 88  LKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKER 147
            K +A E+ R A       E  R+  KR+IE+A+ +F +A+++ E A+ E+EKA  ++E 
Sbjct: 272 -KERANEEARKA-------EETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVVREE 331

Query: 148 ATRQMDSTCMEITCQSCRQRFR 170
           A +++++T MEITC SC+Q F+
Sbjct: 332 AIKRINATMMEITCHSCKQLFQ 335

[Close]

BLAST of ClCG06G017900 vs. TAIR10
Match: AT1G68130.1 (AT1G68130.1 indeterminate(ID)-domain 14)

HSP 1 Score: 64.7 bits (156), Expect = 6.3e-11
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 107 ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 166
           E  R  TKR+IE+A+ EFA A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q
Sbjct: 315 EEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRRISATMMQITCHNCKQ 374

Query: 167 RFR 170
            F+
Sbjct: 375 HFQ 377

[Close]

BLAST of ClCG06G017900 vs. NCBI nr
Match: gi|659128904|ref|XP_008464429.1| (PREDICTED: uncharacterized protein LOC103502321 [Cucumis melo])

HSP 1 Score: 326.2 bits (835), Expect = 3.3e-86
Identity = 165/171 (96.49%), Postives = 165/171 (96.49%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPI 60
           MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEA   GSVDLQLSISLRPI
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAGSGGSVDLQLSISLRPI 60

Query: 61  RPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA 120
           RP  AG ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA
Sbjct: 61  RPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA 120

Query: 121 QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 172
           QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of ClCG06G017900 vs. NCBI nr
Match: gi|449440550|ref|XP_004138047.1| (PREDICTED: protein indeterminate-domain 16 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 2.7e-80
Identity = 164/175 (93.71%), Postives = 166/175 (94.86%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSS-SHMSSRPSDSS-LRFRSDP-FEAAGPGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSS SH+SSRPSDSS LRFRSDP FEA   GSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60

Query: 61  RPIRPAAAG-AECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRP  AG AECLFKYEEVMKPEAASCV+ALKWQAAEQIRLAAMEKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 172
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175

[Close]

BLAST of ClCG06G017900 vs. NCBI nr
Match: gi|645268327|ref|XP_008239477.1| (PREDICTED: uncharacterized protein LOC103338070 [Prunus mume])

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-60
Identity = 126/180 (70.00%), Postives = 143/180 (79.44%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAA------GPGSVDLQLS 60
           ME +DQKELQLLP+PH I SSSS  +SRPSDSS+R+      A       GP S+DLQLS
Sbjct: 1   MEGDDQKELQLLPSPHLITSSSSQRTSRPSDSSIRYHRSSKAAVQDALLEGPNSLDLQLS 60

Query: 61  ISLRPIRPAAAGAECLFKYE----EVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVR 120
           IS+RPIR A++   C+        +V+KP+ A CVEALKWQAAEQIRLAAMEKAYAERVR
Sbjct: 61  ISVRPIRAASSSDRCVVSKPVCDFDVLKPKTAGCVEALKWQAAEQIRLAAMEKAYAERVR 120

Query: 121 ELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 171
           ELT+RE+ELAQ+EF RAR MWERAREEVEKAERMKE+A  QMDSTCMEITCQSCRQRFRP
Sbjct: 121 ELTRREMELAQSEFTRARHMWERAREEVEKAERMKEKAMLQMDSTCMEITCQSCRQRFRP 180

[Close]

BLAST of ClCG06G017900 vs. NCBI nr
Match: gi|595851690|ref|XP_007210164.1| (hypothetical protein PRUPE_ppa021164mg [Prunus persica])

HSP 1 Score: 240.4 bits (612), Expect = 2.4e-60
Identity = 125/180 (69.44%), Postives = 143/180 (79.44%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAA------GPGSVDLQLS 60
           ME +DQKELQLLP+PH + SSSS  +SRPSDSS+R+      A       GP S+DLQLS
Sbjct: 1   MEGDDQKELQLLPSPHLMTSSSSQRTSRPSDSSIRYHRSSKAAVQDALLEGPNSLDLQLS 60

Query: 61  ISLRPIRPAAAGAECLFKYE----EVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVR 120
           IS+RPIR A++   C+        +V+KP+ A CVEALKWQAAEQIRLAAMEKAYAERVR
Sbjct: 61  ISVRPIRAASSSDHCVVSKPVCDFDVLKPKTAGCVEALKWQAAEQIRLAAMEKAYAERVR 120

Query: 121 ELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 171
           ELT+RE+ELAQ+EF RAR MWERAREEVEKAERMKE+A  QMDSTCMEITCQSCRQRFRP
Sbjct: 121 ELTRREMELAQSEFTRARHMWERAREEVEKAERMKEKAMLQMDSTCMEITCQSCRQRFRP 180

[Close]

BLAST of ClCG06G017900 vs. NCBI nr
Match: gi|731426828|ref|XP_010663747.1| (PREDICTED: uncharacterized protein LOC100242196 [Vitis vinifera])

HSP 1 Score: 235.7 bits (600), Expect = 5.9e-59
Identity = 131/177 (74.01%), Postives = 149/177 (84.18%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRS---DPFEAAGPGSVDLQLSISL 60
           ME++DQKELQLLP+PHS+ASSS  MS RPSDSSLR+R    DPFE  GPG +DLQLSISL
Sbjct: 1   MEEDDQKELQLLPSPHSMASSS-RMSGRPSDSSLRYRGIGGDPFE--GPG-LDLQLSISL 60

Query: 61  RPIRP----AAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELT 120
           RPIRP      AG  C  +Y +V   + ASCV+ALKWQAAEQIRLAAMEKAYAERVRELT
Sbjct: 61  RPIRPPPEYVLAGQIC--EYGDVK--QEASCVDALKWQAAEQIRLAAMEKAYAERVRELT 120

Query: 121 KREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 171
           +RE+ELAQ+EFARAR MWERA EEVEKAE+MKE+A R++DSTCMEITCQ+CRQRFRP
Sbjct: 121 RREMELAQSEFARARHMWERAHEEVEKAEKMKEKAMRRIDSTCMEITCQACRQRFRP 169

The following BLAST results are available for this feature:

BLAST of ClCG06G017900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IDD15_ARATH	2.4e-12	41.77	Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1	[more]
IDD16_ARATH	3.0e-10	30.99	Protein indeterminate-domain 16 OS=Arabidopsis thaliana GN=IDD16 PE=2 SV=1	[more]
IDD14_ARATH	1.1e-09	44.44	Protein indeterminate-domain 14 OS=Arabidopsis thaliana GN=IDD14 PE=1 SV=1	[more]

BLAST of ClCG06G017900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRS8_CUCSA	1.9e-80	93.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001530 PE=4 SV=1	[more]
M5WPY3_PRUPE	1.7e-60	69.44	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021164mg PE=4 SV=1	[more]
A5BWN7_VITVI	4.1e-59	74.01	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01360 PE=4 SV=...	[more]
A0A061FYZ0_THECC	2.1e-55	73.03	Uncharacterized protein OS=Theobroma cacao GN=TCM_014645 PE=4 SV=1	[more]
A0A068V2G8_COFCA	8.3e-52	67.82	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042525001 PE=4 SV=1	[more]

BLAST of ClCG06G017900 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48550.1	3.6e-38	53.22	BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger pr...	[more]
AT2G01940.3	1.4e-13	41.77	C2H2-like zinc finger protein	[more]
AT1G25250.1	1.7e-11	30.99	indeterminate(ID)-domain 16	[more]
AT1G68130.1	6.3e-11	44.44	indeterminate(ID)-domain 14	[more]

BLAST of ClCG06G017900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128904\|ref\|XP_008464429.1\|	3.3e-86	96.49	PREDICTED: uncharacterized protein LOC103502321 [Cucumis melo]	[more]
gi\|449440550\|ref\|XP_004138047.1\|	2.7e-80	93.71	PREDICTED: protein indeterminate-domain 16 [Cucumis sativus]	[more]
gi\|645268327\|ref\|XP_008239477.1\|	1.1e-60	70.00	PREDICTED: uncharacterized protein LOC103338070 [Prunus mume]	[more]
gi\|595851690\|ref\|XP_007210164.1\|	2.4e-60	69.44	hypothetical protein PRUPE_ppa021164mg [Prunus persica]	[more]
gi\|731426828\|ref\|XP_010663747.1\|	5.9e-59	74.01	PREDICTED: uncharacterized protein LOC100242196 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009630	gravitropism
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G017900.1	ClCG06G017900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 110..158 scor
None	No IPR available	PANTHER	PTHR34946	FAMILY NOT NAMED	coord: 1..170 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG06G017900	Csa1G001530	Cucumber (Chinese Long) v2	cuwcgB081
ClCG06G017900	MELO3C026206	Melon (DHL92) v3.5.1	mewcgB254
ClCG06G017900	Cla019276	Watermelon (97103) v1	wcgwmB344
ClCG06G017900	Cla97C06G127630	Watermelon (97103) v2	wcgwmbB273
ClCG06G017900	Bhi02G000393	Wax gourd	wcgwgoB549
ClCG06G017900	CSPI01G00530	Wild cucumber (PI 183967)	cpiwcgB083
ClCG06G017900	Cucsa.157330	Cucumber (Gy14) v1	cgywcgB263
ClCG06G017900	CmaCh10G000610	Cucurbita maxima (Rimu)	cmawcgB072
ClCG06G017900	CmaCh11G000320	Cucurbita maxima (Rimu)	cmawcgB136
ClCG06G017900	CmoCh11G000340	Cucurbita moschata (Rifu)	cmowcgB119
ClCG06G017900	CmoCh10G000550	Cucurbita moschata (Rifu)	cmowcgB065
ClCG06G017900	Lsi06G016420	Bottle gourd (USVL1VR-Ls)	lsiwcgB372
ClCG06G017900	Cp4.1LG18g09050	Cucurbita pepo (Zucchini)	cpewcgB336
ClCG06G017900	Cp4.1LG04g16030	Cucurbita pepo (Zucchini)	cpewcgB616
ClCG06G017900	CsGy1G000540	Cucumber (Gy14) v2	cgybwcgB078
ClCG06G017900	MELO3C026206.2	Melon (DHL92) v3.6.1	medwcgB246
ClCG06G017900	Carg20168	Silver-seed gourd	carwcgB1019
ClCG06G017900	Carg10280	Silver-seed gourd	carwcgB0357
ClCG06G017900	CsaV3_1G000550	Cucumber (Chinese Long) v3	cucwcgB088

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G017900	Cucumber (Chinese Long) v3	cucwcgB080
ClCG06G017900	Cucumber (Chinese Long) v3	cucwcgB255
ClCG06G017900	Watermelon (97103) v2	wcgwmbB262
ClCG06G017900	Watermelon (97103) v2	wcgwmbB267
ClCG06G017900	Wax gourd	wcgwgoB530
ClCG06G017900	Wax gourd	wcgwgoB520
ClCG06G017900	Wax gourd	wcgwgoB546
ClCG06G017900	Wax gourd	wcgwgoB550
ClCG06G017900	Watermelon (Charleston Gray)	wcgwcgB144
ClCG06G017900	Watermelon (Charleston Gray)	wcgwcgB157
ClCG06G017900	Cucurbita maxima (Rimu)	cmawcgB209
ClCG06G017900	Cucurbita maxima (Rimu)	cmawcgB237
ClCG06G017900	Cucurbita moschata (Rifu)	cmowcgB196
ClCG06G017900	Cucurbita moschata (Rifu)	cmowcgB223
ClCG06G017900	Cucurbita moschata (Rifu)	cmowcgB366
ClCG06G017900	Wild cucumber (PI 183967)	cpiwcgB075
ClCG06G017900	Wild cucumber (PI 183967)	cpiwcgB256
ClCG06G017900	Cucumber (Chinese Long) v2	cuwcgB075
ClCG06G017900	Cucumber (Chinese Long) v2	cuwcgB248
ClCG06G017900	Melon (DHL92) v3.5.1	mewcgB160
ClCG06G017900	Melon (DHL92) v3.5.1	mewcgB439
ClCG06G017900	Watermelon (97103) v1	wcgwmB322
ClCG06G017900	Cucurbita pepo (Zucchini)	cpewcgB051
ClCG06G017900	Cucurbita pepo (Zucchini)	cpewcgB476
ClCG06G017900	Cucurbita pepo (Zucchini)	cpewcgB563
ClCG06G017900	Bottle gourd (USVL1VR-Ls)	lsiwcgB199
ClCG06G017900	Cucumber (Gy14) v2	cgybwcgB069
ClCG06G017900	Cucumber (Gy14) v2	cgybwcgB231
ClCG06G017900	Melon (DHL92) v3.6.1	medwcgB151
ClCG06G017900	Melon (DHL92) v3.6.1	medwcgB438
ClCG06G017900	Silver-seed gourd	carwcgB0430
ClCG06G017900	Silver-seed gourd	carwcgB0483