Csa1G001530 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G001530
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	C2H2-like zinc finger protein
Location	Chr1 : 292783 .. 293541 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCAAAGAAAAAAGAGAAAAGAAAAAAGAAAAAAAGAGAGAAAAAAAAAGGAAAACCAATCTCCCTTTTTATTTGTATCTTCAGAAATGGAAGATGAAGATCAGAAAGAGTTACAGCTTCTTCCAACACCACACTCCATAGCATCTTCGTCGACGTCCCACATATCGTCTCGTCCATCTGACTCCTCCTCGTTACGGTTCCGTTCCGATCCATTATTCGAAGCAGGATCAGGAGGATCGGTGGACCTACAGCTATCAATAAGTCTAAGGCCAATCCGGCCAGTAACGGCAGGGGGGGCGGAGTGCTTGTTCAAGTATGAGGAGGTGATGAAGCCTGAGGCAGCGAGCTGTGTGGACGCGCTCAAGTGGCAAGCGGCGGAGCAAATTCGGCTGGCGGCGATGGAAAAGGCGTATGCTGAGAGAGTTAGAGAACTGACAAAGAGGGAAATAGAACTGGCTCAAACGGAATTTGCTAGGGCAAGGCAGATGTGGGAAAGAGCAAGAGAAGAAGTTGAGAAAGCTGAAAGAATGAAAGAAAGAGCTACTCGTCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAATTATTATCTTTAATCATAATTTTACCTCATTAATTACCCCTTTCCATTTCCCTTAATTATCCAGAGTTTCTTTTAGTTAAATCTCTGCTTGGGTCTGTTTTCTTTTTTCTTTTTAATTAATCATTTAAATCAAGTAAACTAGAG

mRNA sequence

ATGGAAGATGAAGATCAGAAAGAGTTACAGCTTCTTCCAACACCACACTCCATAGCATCTTCGTCGACGTCCCACATATCGTCTCGTCCATCTGACTCCTCCTCGTTACGGTTCCGTTCCGATCCATTATTCGAAGCAGGATCAGGAGGATCGGTGGACCTACAGCTATCAATAAGTCTAAGGCCAATCCGGCCAGTAACGGCAGGGGGGGCGGAGTGCTTGTTCAAGTATGAGGAGGTGATGAAGCCTGAGGCAGCGAGCTGTGTGGACGCGCTCAAGTGGCAAGCGGCGGAGCAAATTCGGCTGGCGGCGATGGAAAAGGCGTATGCTGAGAGAGTTAGAGAACTGACAAAGAGGGAAATAGAACTGGCTCAAACGGAATTTGCTAGGGCAAGGCAGATGTGGGAAAGAGCAAGAGAAGAAGTTGAGAAAGCTGAAAGAATGAAAGAAAGAGCTACTCGTCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAA

Coding sequence (CDS)

ATGGAAGATGAAGATCAGAAAGAGTTACAGCTTCTTCCAACACCACACTCCATAGCATCTTCGTCGACGTCCCACATATCGTCTCGTCCATCTGACTCCTCCTCGTTACGGTTCCGTTCCGATCCATTATTCGAAGCAGGATCAGGAGGATCGGTGGACCTACAGCTATCAATAAGTCTAAGGCCAATCCGGCCAGTAACGGCAGGGGGGGCGGAGTGCTTGTTCAAGTATGAGGAGGTGATGAAGCCTGAGGCAGCGAGCTGTGTGGACGCGCTCAAGTGGCAAGCGGCGGAGCAAATTCGGCTGGCGGCGATGGAAAAGGCGTATGCTGAGAGAGTTAGAGAACTGACAAAGAGGGAAATAGAACTGGCTCAAACGGAATTTGCTAGGGCAAGGCAGATGTGGGAAAGAGCAAGAGAAGAAGTTGAGAAAGCTGAAAGAATGAAAGAAAGAGCTACTCGTCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAA

Protein sequence

MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISLRPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS*

Homology

[Close]

BLAST of Csa1G001530 vs. Swiss-Prot
Match: IDD15_ARATH (Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-12
Identity = 33/79 (41.77%), Postives = 59/79 (74.68%), Query Frame = 1


Query: 96  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 155
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 335 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 394

Query: 156 QMDSTCMEITCQSCRQRFR 174
           ++ ST M++TCQ+C+ +F+
Sbjct: 395 KISSTIMQVTCQTCKGQFQ 413

[Close]

BLAST of Csa1G001530 vs. Swiss-Prot
Match: IDD16_ARATH (Protein indeterminate-domain 16 OS=Arabidopsis thaliana GN=IDD16 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.8e-10
Identity = 47/145 (32.41%), Postives = 73/145 (50.34%), Query Frame = 1


Query: 29  RPSDSSSLRFRSDPLFEAGSGGSVDLQLSISLRPIRPVTAGGAECLFKYEEVMKPEAASC 88
           RPS+  S  F     F A S     L+L +S+   R  T+  A    K E  +  E A+ 
Sbjct: 212 RPSNQHSPAFAYP--FNASSAPFESLELQLSIGMAR--TSAQARHNEKRETSLTKERAN- 271

Query: 89  VDALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERM 148
                            E   AE  R+  KR+IE+A+ +F +A+++ E A+ E+EKA  +
Sbjct: 272 ----------------EEARKAEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVV 331

Query: 149 KERATRQMDSTCMEITCQSCRQRFR 174
           +E A +++++T MEITC SC+Q F+
Sbjct: 332 REEAIKRINATMMEITCHSCKQLFQ 335

[Close]

BLAST of Csa1G001530 vs. Swiss-Prot
Match: IDD14_ARATH (Protein indeterminate-domain 14 OS=Arabidopsis thaliana GN=IDD14 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 111 ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 170
           E  R  TKR+IE+A+ EFA A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q
Sbjct: 315 EEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRRISATMMQITCHNCKQ 374

Query: 171 RFR 174
            F+
Sbjct: 375 HFQ 377

[Close]

BLAST of Csa1G001530 vs. TrEMBL
Match: A0A0A0LRS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001530 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 3.8e-92
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 176
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175

[Close]

BLAST of Csa1G001530 vs. TrEMBL
Match: A5BWN7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01360 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.8e-55
Identity = 126/180 (70.00%), Postives = 144/180 (80.00%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRS---DPLFEAGSGGSVDLQLS 60
           ME++DQKELQLLP+PHS+ASSS   +S RPSDSS LR+R    DP      G  +DLQLS
Sbjct: 1   MEEDDQKELQLLPSPHSMASSS--RMSGRPSDSS-LRYRGIGGDPF----EGPGLDLQLS 60

Query: 61  ISLRPIRP---VTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVR 120
           ISLRPIRP       G  C  +Y +V   + ASCVDALKWQAAEQIRLAAMEKAYAERVR
Sbjct: 61  ISLRPIRPPPEYVLAGQIC--EYGDVK--QEASCVDALKWQAAEQIRLAAMEKAYAERVR 120

Query: 121 ELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 175
           ELT+RE+ELAQ+EFARAR MWERA EEVEKAE+MKE+A R++DSTCMEITCQ+CRQRFRP
Sbjct: 121 ELTRREMELAQSEFARARHMWERAHEEVEKAEKMKEKAMRRIDSTCMEITCQACRQRFRP 169

[Close]

BLAST of Csa1G001530 vs. TrEMBL
Match: M5WPY3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021164mg PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.4e-54
Identity = 123/184 (66.85%), Postives = 142/184 (77.17%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRS------DPLFEAGSGGSVDL 60
           ME +DQKELQLLP+PH + SSS+   +SRPSDSS    RS      D L E  +  S+DL
Sbjct: 1   MEGDDQKELQLLPSPHLMTSSSSQR-TSRPSDSSIRYHRSSKAAVQDALLEGPN--SLDL 60

Query: 61  QLSISLRPIRPVTAGGAECLFKYE----EVMKPEAASCVDALKWQAAEQIRLAAMEKAYA 120
           QLSIS+RPIR  ++    C+        +V+KP+ A CV+ALKWQAAEQIRLAAMEKAYA
Sbjct: 61  QLSISVRPIRAASSSD-HCVVSKPVCDFDVLKPKTAGCVEALKWQAAEQIRLAAMEKAYA 120

Query: 121 ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 175
           ERVRELT+RE+ELAQ+EF RAR MWERAREEVEKAERMKE+A  QMDSTCMEITCQSCRQ
Sbjct: 121 ERVRELTRREMELAQSEFTRARHMWERAREEVEKAERMKEKAMLQMDSTCMEITCQSCRQ 180

[Close]

BLAST of Csa1G001530 vs. TrEMBL
Match: A0A061FYZ0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014645 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.3e-54
Identity = 124/175 (70.86%), Postives = 142/175 (81.14%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           ME+EDQKELQLLPT  SIASSS   +SSR SDSS LR+RS    +   G S+DLQLSISL
Sbjct: 1   MEEEDQKELQLLPTSLSIASSS--QMSSRASDSS-LRYRSTTTSDQYEGPSLDLQLSISL 60

Query: 61  RPIR-PVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKR 120
           RPI+ P     A  +  + +V      SCV++LKWQAAEQIRLAA+EKAYAERVR+LTKR
Sbjct: 61  RPIQQPSNCVIAGPICDFGDVKAD--TSCVESLKWQAAEQIRLAAIEKAYAERVRDLTKR 120

Query: 121 EIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 175
           E+ELAQ+EFARAR MW+RAREEVEKAERMKERATR++DSTCMEITCQSCRQRFRP
Sbjct: 121 EMELAQSEFARARHMWQRAREEVEKAERMKERATRKIDSTCMEITCQSCRQRFRP 170

[Close]

BLAST of Csa1G001530 vs. TrEMBL
Match: B9RAF7_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1506160 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-52
Identity = 120/183 (65.57%), Postives = 141/183 (77.05%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSST-SHISSRPSDSSSLRFRSDPLFEAG----SGGSVDLQ 60
           ME++D KELQLLP+  S+ASSS+ S +S RP DS+SLR+RS     A      G S+DLQ
Sbjct: 1   MEEDDHKELQLLPSQQSLASSSSCSLMSFRPPDSNSLRYRSSATVSADHNQFGGPSLDLQ 60

Query: 61  LSISLRPIRPVT---AGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAER 120
           LSISL PI+  +     G  C F   +V       CV+ALKWQAAEQIRLAA+EKAYAER
Sbjct: 61  LSISLSPIQAPSNCVLTGPICDFSDGKV----DTGCVEALKWQAAEQIRLAAIEKAYAER 120

Query: 121 VRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRF 176
           VRELT+RE+ELAQ+EFARAR MW+RAREE EKAERMKERATRQ+DSTCMEITCQSCRQRF
Sbjct: 121 VRELTRREMELAQSEFARARHMWQRAREEAEKAERMKERATRQIDSTCMEITCQSCRQRF 179

[Close]

BLAST of Csa1G001530 vs. TAIR10
Match: AT3G48550.1 (AT3G48550.1 BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3))

HSP 1 Score: 155.6 bits (392), Expect = 2.8e-38
Identity = 93/177 (52.54%), Postives = 115/177 (64.97%), Query Frame = 1


Query: 2   EDEDQKELQLLPTPHSIASSSTSHISSRPS----DSSSLRFRSDPLFEAGSGGSVDLQLS 61
           + +  KELQLLP+P S  S    H   RP+    D  +   RS  +        +DL+LS
Sbjct: 4   QQDHHKELQLLPSPPSTESPVRKH---RPTVITTDHHNNHHRSSSMIHH----DLDLKLS 63

Query: 62  ISLRPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELT 121
           ISL  I              EE+  P     V+ALKWQAAEQIRLAA+EKAYAERVRELT
Sbjct: 64  ISLSSISTA-----------EEL--PNGG--VEALKWQAAEQIRLAAIEKAYAERVRELT 123

Query: 122 KREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 175
           +RE+E+AQ+EFARAR MW++AREEVE+AER+KER+  ++D+ C+EITC SCRQRFRP
Sbjct: 124 RREMEMAQSEFARARVMWQKAREEVERAERLKERSMTKIDTACLEITCHSCRQRFRP 158

[Close]

BLAST of Csa1G001530 vs. TAIR10
Match: AT2G01940.3 (AT2G01940.3 C2H2-like zinc finger protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 33/79 (41.77%), Postives = 59/79 (74.68%), Query Frame = 1


Query: 96  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 155
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 336 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 395

Query: 156 QMDSTCMEITCQSCRQRFR 174
           ++ ST M++TCQ+C+ +F+
Sbjct: 396 KISSTIMQVTCQTCKGQFQ 414

[Close]

BLAST of Csa1G001530 vs. TAIR10
Match: AT1G25250.1 (AT1G25250.1 indeterminate(ID)-domain 16)

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-11
Identity = 47/145 (32.41%), Postives = 73/145 (50.34%), Query Frame = 1


Query: 29  RPSDSSSLRFRSDPLFEAGSGGSVDLQLSISLRPIRPVTAGGAECLFKYEEVMKPEAASC 88
           RPS+  S  F     F A S     L+L +S+   R  T+  A    K E  +  E A+ 
Sbjct: 212 RPSNQHSPAFAYP--FNASSAPFESLELQLSIGMAR--TSAQARHNEKRETSLTKERAN- 271

Query: 89  VDALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERM 148
                            E   AE  R+  KR+IE+A+ +F +A+++ E A+ E+EKA  +
Sbjct: 272 ----------------EEARKAEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVV 331

Query: 149 KERATRQMDSTCMEITCQSCRQRFR 174
           +E A +++++T MEITC SC+Q F+
Sbjct: 332 REEAIKRINATMMEITCHSCKQLFQ 335

[Close]

BLAST of Csa1G001530 vs. TAIR10
Match: AT1G68130.1 (AT1G68130.1 indeterminate(ID)-domain 14)

HSP 1 Score: 64.7 bits (156), Expect = 6.5e-11
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 111 ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 170
           E  R  TKR+IE+A+ EFA A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q
Sbjct: 315 EEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRRISATMMQITCHNCKQ 374

Query: 171 RFR 174
            F+
Sbjct: 375 HFQ 377

[Close]

BLAST of Csa1G001530 vs. NCBI nr
Match: gi|449440550|ref|XP_004138047.1| (PREDICTED: protein indeterminate-domain 16 [Cucumis sativus])

HSP 1 Score: 345.5 bits (885), Expect = 5.4e-92
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 176
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175

[Close]

BLAST of Csa1G001530 vs. NCBI nr
Match: gi|659128904|ref|XP_008464429.1| (PREDICTED: uncharacterized protein LOC103502321 [Cucumis melo])

HSP 1 Score: 317.8 bits (813), Expect = 1.2e-83
Identity = 169/175 (96.57%), Postives = 171/175 (97.71%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSS SH+SSRPSDSS LRFRSDP FEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSS-SHMSSRPSDSS-LRFRSDP-FEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRPVTAGG ECLFKYEEVMKPEAASCV+ALKWQAAEQIRLAAMEKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGG-ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 176
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of Csa1G001530 vs. NCBI nr
Match: gi|731426828|ref|XP_010663747.1| (PREDICTED: uncharacterized protein LOC100242196 [Vitis vinifera])

HSP 1 Score: 223.0 bits (567), Expect = 4.1e-55
Identity = 126/180 (70.00%), Postives = 144/180 (80.00%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRS---DPLFEAGSGGSVDLQLS 60
           ME++DQKELQLLP+PHS+ASSS   +S RPSDSS LR+R    DP      G  +DLQLS
Sbjct: 1   MEEDDQKELQLLPSPHSMASSS--RMSGRPSDSS-LRYRGIGGDPF----EGPGLDLQLS 60

Query: 61  ISLRPIRP---VTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVR 120
           ISLRPIRP       G  C  +Y +V   + ASCVDALKWQAAEQIRLAAMEKAYAERVR
Sbjct: 61  ISLRPIRPPPEYVLAGQIC--EYGDVK--QEASCVDALKWQAAEQIRLAAMEKAYAERVR 120

Query: 121 ELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 175
           ELT+RE+ELAQ+EFARAR MWERA EEVEKAE+MKE+A R++DSTCMEITCQ+CRQRFRP
Sbjct: 121 ELTRREMELAQSEFARARHMWERAHEEVEKAEKMKEKAMRRIDSTCMEITCQACRQRFRP 169

[Close]

BLAST of Csa1G001530 vs. NCBI nr
Match: gi|645268327|ref|XP_008239477.1| (PREDICTED: uncharacterized protein LOC103338070 [Prunus mume])

HSP 1 Score: 221.9 bits (564), Expect = 9.1e-55
Identity = 124/183 (67.76%), Postives = 142/183 (77.60%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRS------DPLFEAGSGGSVDL 60
           ME +DQKELQLLP+PH I SSS+   +SRPSDSS    RS      D L E  +  S+DL
Sbjct: 1   MEGDDQKELQLLPSPHLITSSSSQR-TSRPSDSSIRYHRSSKAAVQDALLEGPN--SLDL 60

Query: 61  QLSISLRPIRPVTAGGAECLFKYE---EVMKPEAASCVDALKWQAAEQIRLAAMEKAYAE 120
           QLSIS+RPIR  ++     + K     +V+KP+ A CV+ALKWQAAEQIRLAAMEKAYAE
Sbjct: 61  QLSISVRPIRAASSSDRCVVSKPVCDFDVLKPKTAGCVEALKWQAAEQIRLAAMEKAYAE 120

Query: 121 RVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQR 175
           RVRELT+RE+ELAQ+EF RAR MWERAREEVEKAERMKE+A  QMDSTCMEITCQSCRQR
Sbjct: 121 RVRELTRREMELAQSEFTRARHMWERAREEVEKAERMKEKAMLQMDSTCMEITCQSCRQR 180

[Close]

BLAST of Csa1G001530 vs. NCBI nr
Match: gi|595851690|ref|XP_007210164.1| (hypothetical protein PRUPE_ppa021164mg [Prunus persica])

HSP 1 Score: 220.7 bits (561), Expect = 2.0e-54
Identity = 123/184 (66.85%), Postives = 142/184 (77.17%), Query Frame = 1


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRS------DPLFEAGSGGSVDL 60
           ME +DQKELQLLP+PH + SSS+   +SRPSDSS    RS      D L E  +  S+DL
Sbjct: 1   MEGDDQKELQLLPSPHLMTSSSSQR-TSRPSDSSIRYHRSSKAAVQDALLEGPN--SLDL 60

Query: 61  QLSISLRPIRPVTAGGAECLFKYE----EVMKPEAASCVDALKWQAAEQIRLAAMEKAYA 120
           QLSIS+RPIR  ++    C+        +V+KP+ A CV+ALKWQAAEQIRLAAMEKAYA
Sbjct: 61  QLSISVRPIRAASSSD-HCVVSKPVCDFDVLKPKTAGCVEALKWQAAEQIRLAAMEKAYA 120

Query: 121 ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 175
           ERVRELT+RE+ELAQ+EF RAR MWERAREEVEKAERMKE+A  QMDSTCMEITCQSCRQ
Sbjct: 121 ERVRELTRREMELAQSEFTRARHMWERAREEVEKAERMKEKAMLQMDSTCMEITCQSCRQ 180

The following BLAST results are available for this feature:

BLAST of Csa1G001530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IDD15_ARATH	2.5e-12	41.77	Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1	[more]
IDD16_ARATH	6.8e-10	32.41	Protein indeterminate-domain 16 OS=Arabidopsis thaliana GN=IDD16 PE=2 SV=1	[more]
IDD14_ARATH	1.2e-09	44.44	Protein indeterminate-domain 14 OS=Arabidopsis thaliana GN=IDD14 PE=1 SV=1	[more]

BLAST of Csa1G001530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRS8_CUCSA	3.8e-92	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001530 PE=4 SV=1	[more]
A5BWN7_VITVI	2.8e-55	70.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01360 PE=4 SV=...	[more]
M5WPY3_PRUPE	1.4e-54	66.85	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021164mg PE=4 SV=1	[more]
A0A061FYZ0_THECC	5.3e-54	70.86	Uncharacterized protein OS=Theobroma cacao GN=TCM_014645 PE=4 SV=1	[more]
B9RAF7_RICCO	1.7e-52	65.57	Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1506160 PE=4 ...	[more]

BLAST of Csa1G001530 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48550.1	2.8e-38	52.54	BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger pr...	[more]
AT2G01940.3	1.4e-13	41.77	C2H2-like zinc finger protein	[more]
AT1G25250.1	3.8e-11	32.41	indeterminate(ID)-domain 16	[more]
AT1G68130.1	6.5e-11	44.44	indeterminate(ID)-domain 14	[more]

BLAST of Csa1G001530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440550\|ref\|XP_004138047.1\|	5.4e-92	100.00	PREDICTED: protein indeterminate-domain 16 [Cucumis sativus]	[more]
gi\|659128904\|ref\|XP_008464429.1\|	1.2e-83	96.57	PREDICTED: uncharacterized protein LOC103502321 [Cucumis melo]	[more]
gi\|731426828\|ref\|XP_010663747.1\|	4.1e-55	70.00	PREDICTED: uncharacterized protein LOC100242196 [Vitis vinifera]	[more]
gi\|645268327\|ref\|XP_008239477.1\|	9.1e-55	67.76	PREDICTED: uncharacterized protein LOC103338070 [Prunus mume]	[more]
gi\|595851690\|ref\|XP_007210164.1\|	2.0e-54	66.85	hypothetical protein PRUPE_ppa021164mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009630	gravitropism
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU095120	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G001530.1	Csa1G001530.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU095120	CU095120	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 114..162 scor
None	No IPR available	PANTHER	PTHR34946	FAMILY NOT NAMED	coord: 1..174 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G001530	Cla019276	Watermelon (97103) v1	cuwmB094
Csa1G001530	MELO3C026206	Melon (DHL92) v3.5.1	cumeB054
Csa1G001530	ClCG06G017900	Watermelon (Charleston Gray)	cuwcgB081
Csa1G001530	Lsi06G016420	Bottle gourd (USVL1VR-Ls)	culsiB070
Csa1G001530	MELO3C026206.2	Melon (DHL92) v3.6.1	cumedB046
Csa1G001530	Cla97C06G127630	Watermelon (97103) v2	cuwmbB078
Csa1G001530	CSPI01G00530	Wild cucumber (PI 183967)	cpicuB000
Csa1G001530	Cucsa.157330	Cucumber (Gy14) v1	cgycuB224
Csa1G001530	CmaCh11G000320	Cucurbita maxima (Rimu)	cmacuB086
Csa1G001530	CmaCh10G000610	Cucurbita maxima (Rimu)	cmacuB048
Csa1G001530	CmoCh11G000340	Cucurbita moschata (Rifu)	cmocuB076
Csa1G001530	CmoCh10G000550	Cucurbita moschata (Rifu)	cmocuB037
Csa1G001530	Cp4.1LG18g09050	Cucurbita pepo (Zucchini)	cpecuB361
Csa1G001530	Cp4.1LG04g16030	Cucurbita pepo (Zucchini)	cpecuB653
Csa1G001530	CsGy1G000540	Cucumber (Gy14) v2	cgybcuB001
Csa1G001530	Carg10280	Silver-seed gourd	carcuB0391
Csa1G001530	Carg20168	Silver-seed gourd	carcuB1062

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G001530	Melon (DHL92) v3.5.1	cumeB022
Csa1G001530	Melon (DHL92) v3.5.1	cumeB078
Csa1G001530	Watermelon (Charleston Gray)	cuwcgB052
Csa1G001530	Watermelon (Charleston Gray)	cuwcgB065
Csa1G001530	Watermelon (97103) v1	cuwmB028
Csa1G001530	Cucurbita pepo (Zucchini)	cpecuB513
Csa1G001530	Bottle gourd (USVL1VR-Ls)	culsiB041
Csa1G001530	Cucumber (Gy14) v2	cgybcuB014
Csa1G001530	Cucumber (Gy14) v2	cgybcuB096
Csa1G001530	Melon (DHL92) v3.6.1	cumedB018
Csa1G001530	Watermelon (97103) v2	cuwmbB050
Csa1G001530	Watermelon (97103) v2	cuwmbB063
Csa1G001530	Wax gourd	cuwgoB061
Csa1G001530	Wax gourd	cuwgoB079
Csa1G001530	Cucumber (Chinese Long) v2	cucuB002
Csa1G001530	Cucumber (Chinese Long) v2	cucuB014
Csa1G001530	Cucurbita maxima (Rimu)	cmacuB225
Csa1G001530	Cucurbita moschata (Rifu)	cmocuB211
Csa1G001530	Cucurbita moschata (Rifu)	cmocuB393