CSPI01G00530 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTTCCATTGTACTCAAAGAAAAAAGAGAAAAGAAAAAAGAAAAAAAGAGAGAAAAAAAAAGGAAAACCAATCTCCCTTTTTATTTGTATCTTCAGAAATGGAAGATGAAGATCAGAAAGAGTTACAGCTTCTTCCAACACCACACTCCATAGCATCTTCGTCGACGTCCCACATATCGTCTCGTCCATCTGACTCCTCCTCGTTACGGTTCCGTTCCGATCCATTATTCGAAGCAGGATCAGGAGGATCGGTGGACCTACAGCTATCAATAAGTCTAAGGCCAATCCGGCCAGTAACGGCAGGGGGGGCGGAGTGCTTGTTCAAGTATGAGGAGGTGATGAAGCCTGAGGCAGCGAGCTGTGTGGACGCGCTCAAGTGGCAAGCGGCGGAGCAAATTCGGCTGGCGGCGATGGAAAAGGCGTATGCTGAGAGAGTTAGAGAACTGACAAAGAGGGAAATAGAACTGGCTCAAACGGAATTTGCTAGGGCAAGGCAGATGTGGGAAAGAGCAAGAGAAGAAGTTGAGAAAGCTGAAAGAATGAAAGAAAGAGCTACTCGTCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAATTATTATCTTTAATCATAATTTTACCTCATTAATTACCCCTTTCCATTTCCCTTAATTATCCAGAGTTTCTTTTAGTTAAATCTCTGCTTGGGTCTGTTTTCTTTTTTCTTTTTAATTAATCATTTAAATCAAGTAAACTAGAGAAG ATGGAAGATGAAGATCAGAAAGAGTTACAGCTTCTTCCAACACCACACTCCATAGCATCTTCGTCGACGTCCCACATATCGTCTCGTCCATCTGACTCCTCCTCGTTACGGTTCCGTTCCGATCCATTATTCGAAGCAGGATCAGGAGGATCGGTGGACCTACAGCTATCAATAAGTCTAAGGCCAATCCGGCCAGTAACGGCAGGGGGGGCGGAGTGCTTGTTCAAGTATGAGGAGGTGATGAAGCCTGAGGCAGCGAGCTGTGTGGACGCGCTCAAGTGGCAAGCGGCGGAGCAAATTCGGCTGGCGGCGATGGAAAAGGCGTATGCTGAGAGAGTTAGAGAACTGACAAAGAGGGAAATAGAACTGGCTCAAACGGAATTTGCTAGGGCAAGGCAGATGTGGGAAAGAGCAAGAGAAGAAGTTGAGAAAGCTGAAAGAATGAAAGAAAGAGCTACTCGTCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAA ATGGAAGATGAAGATCAGAAAGAGTTACAGCTTCTTCCAACACCACACTCCATAGCATCTTCGTCGACGTCCCACATATCGTCTCGTCCATCTGACTCCTCCTCGTTACGGTTCCGTTCCGATCCATTATTCGAAGCAGGATCAGGAGGATCGGTGGACCTACAGCTATCAATAAGTCTAAGGCCAATCCGGCCAGTAACGGCAGGGGGGGCGGAGTGCTTGTTCAAGTATGAGGAGGTGATGAAGCCTGAGGCAGCGAGCTGTGTGGACGCGCTCAAGTGGCAAGCGGCGGAGCAAATTCGGCTGGCGGCGATGGAAAAGGCGTATGCTGAGAGAGTTAGAGAACTGACAAAGAGGGAAATAGAACTGGCTCAAACGGAATTTGCTAGGGCAAGGCAGATGTGGGAAAGAGCAAGAGAAGAAGTTGAGAAAGCTGAAAGAATGAAAGAAAGAGCTACTCGTCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAA
BLAST of CSPI01G00530 vs. Swiss-Prot
Match: IDD15_ARATH (Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 7.5e-09 Identity = 33/79 (41.77%), Postives = 61/79 (77.22%), Query Frame = 1
BLAST of CSPI01G00530 vs. Swiss-Prot
Match: IDD14_ARATH (Protein indeterminate-domain 14 OS=Arabidopsis thaliana GN=IDD14 PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 9.2e-07 Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 1
BLAST of CSPI01G00530 vs. Swiss-Prot
Match: IDD16_ARATH (Protein indeterminate-domain 16 OS=Arabidopsis thaliana GN=IDD16 PE=2 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.0e-06 Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = 1
BLAST of CSPI01G00530 vs. TrEMBL
Match: A0A0A0LRS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001530 PE=4 SV=1) HSP 1 Score: 328.9 bits (842), Expect = 3.7e-87 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1
BLAST of CSPI01G00530 vs. TrEMBL
Match: A5BWN7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01360 PE=4 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 2.1e-50 Identity = 126/180 (70.00%), Postives = 144/180 (80.00%), Query Frame = 1
BLAST of CSPI01G00530 vs. TrEMBL
Match: M5WPY3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021164mg PE=4 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 8.0e-50 Identity = 123/184 (66.85%), Postives = 143/184 (77.72%), Query Frame = 1
BLAST of CSPI01G00530 vs. TrEMBL
Match: A0A061FYZ0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014645 PE=4 SV=1) HSP 1 Score: 203.4 bits (516), Expect = 2.3e-49 Identity = 124/175 (70.86%), Postives = 142/175 (81.14%), Query Frame = 1
BLAST of CSPI01G00530 vs. TrEMBL
Match: B9RAF7_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1506160 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 1.7e-47 Identity = 120/183 (65.57%), Postives = 141/183 (77.05%), Query Frame = 1
BLAST of CSPI01G00530 vs. TAIR10
Match: AT3G48550.1 (AT3G48550.1 BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3)) HSP 1 Score: 139.8 bits (351), Expect = 1.6e-33 Identity = 93/177 (52.54%), Postives = 117/177 (66.10%), Query Frame = 1
BLAST of CSPI01G00530 vs. TAIR10
Match: AT2G01940.3 (AT2G01940.3 C2H2-like zinc finger protein) HSP 1 Score: 62.0 bits (149), Expect = 4.2e-10 Identity = 33/79 (41.77%), Postives = 61/79 (77.22%), Query Frame = 1
BLAST of CSPI01G00530 vs. TAIR10
Match: AT1G68130.1 (AT1G68130.1 indeterminate(ID)-domain 14) HSP 1 Score: 55.1 bits (131), Expect = 5.2e-08 Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 1
BLAST of CSPI01G00530 vs. TAIR10
Match: AT1G25250.1 (AT1G25250.1 indeterminate(ID)-domain 16) HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07 Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = 1
BLAST of CSPI01G00530 vs. NCBI nr
Match: gi|449440550|ref|XP_004138047.1| (PREDICTED: protein indeterminate-domain 16 [Cucumis sativus]) HSP 1 Score: 328.9 bits (842), Expect = 5.3e-87 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1
BLAST of CSPI01G00530 vs. NCBI nr
Match: gi|659128904|ref|XP_008464429.1| (PREDICTED: uncharacterized protein LOC103502321 [Cucumis melo]) HSP 1 Score: 301.6 bits (771), Expect = 9.0e-79 Identity = 169/175 (96.57%), Postives = 171/175 (97.71%), Query Frame = 1
BLAST of CSPI01G00530 vs. NCBI nr
Match: gi|731426828|ref|XP_010663747.1| (PREDICTED: uncharacterized protein LOC100242196 [Vitis vinifera]) HSP 1 Score: 206.8 bits (525), Expect = 3.0e-50 Identity = 126/180 (70.00%), Postives = 144/180 (80.00%), Query Frame = 1
BLAST of CSPI01G00530 vs. NCBI nr
Match: gi|645268327|ref|XP_008239477.1| (PREDICTED: uncharacterized protein LOC103338070 [Prunus mume]) HSP 1 Score: 205.7 bits (522), Expect = 6.7e-50 Identity = 125/183 (68.31%), Postives = 142/183 (77.60%), Query Frame = 1
BLAST of CSPI01G00530 vs. NCBI nr
Match: gi|595851690|ref|XP_007210164.1| (hypothetical protein PRUPE_ppa021164mg [Prunus persica]) HSP 1 Score: 204.9 bits (520), Expect = 1.1e-49 Identity = 123/184 (66.85%), Postives = 143/184 (77.72%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |