Cp4.1LG16g07810 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g07810
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	E3 ubiquitin-protein ligase RMA1H1
Location	Cp4.1LG16 : 7729404 .. 7731727 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATGAAAATAGGATGTTTATGAGAGAAAAAAAAGGGATTTGATTGAAGAGATAGCAGAGGTTGAAAGGATACCAATGTTTTTTTTGTCGTATTCAGTTATTTGCATTAAGCTGAGACGCCGCATCGTCATCGTCCCATCCTCTTCCCTTTCCCTTCCTTTTTCTATTTCCGTAGAATTACAGATACCTTTCCCTATATAAACACCCTTCAAAACTCACCATCACTCTGTTCTTAATTTTACGCCCATTTAGCCCTTTTCAACTAAGCTTCTTACTCATCCCGCGATTCGCTTTCGGTACGTTTCTATTCCGCCCTTTTCTCTCTGTGTGTTACTTCTAGATGGGGTTGTGTTTCTCAGGGGAATGGTCTTTTTAGATCTGTTTGCTAATGGAGATGGGGTTTTTGTTCTTCAGTTTCTTGGTTTAGGTTTCTCTAATGGAGATGGGGTTCTTTGTTTTTGAGTTGATTTTCGTCGCTTCCAACTCCAACCTCGTTCTCGTGGATGGATTTTTATTGGGTTTTCTTTGTTTTCTGGAAACTGTTCTATTTGTTCAACAGTAGGCAATTTTTCATGCTCTGTTTTTGCTCTGTTTTTTGCTCTGTTTTGTGTGGTGGAGCGTGGTGATGGCTTCATCGAATCATTTTGTTTTCTGGGTGTTCTTATTTGCCAAAGATCATACGCCAATAGAACTTTTCTCAAGTGATAAACATCGATAATCTTGTTTTCTGGGTGTTCTTATAGGCTCTTTGAATCGGAAGTTCATCATGGTTTTATTAATTGTAACTTGGGCTTGAATTCACTTTTGTTAATTGTTGGGATTGATGCCTTTTTTATTTCTTCTACGCATGATTATGCCTTTCGGATCTGTTTCCCAAGTAATACACTGATGATTCTGTTCACTTTCAAGTGGTTTGCTTGCATATGAGTTTATCTGCTTCAAAAGAAAGCTTATAGATGCTTGAATTTCTTAATTAAATCAATTGAGTCATCTGGGTCTGTCAAGATCATCGTATTCTGATATTTATGGGAACTTCAGAAATCATCCACATCATCTCCCAGTTGGAGGTTTCGTGAAAGAATGTTCAAGAACTGGCCCTTCAGATTACAATAATCTATGAGCTCAGGAACCAATGAAGAATATATTCGAACCAATGGATTAGGATGATAGTTTGGTATCTTATCACTGCTGCAATGGATGGGATGTTTTTGGTTTATTGATGAGTGCCTAGTTCGGCGTGTCTTCATAGCTTCATCTTATCCAAATTCCTGTGTTTTTTTGTCTGTTTCTGTGTGATTTTCTGATCAAATTCTGCAAGATTTCATTAATCTTGTCTTGGAATTTTGTTGTCTTCTTGTTCTTCTGAGTTCTGACATTGTTTTCTGGACATGAAAACAAGACATGGAGCAGCTGTACCTTGTTCCAGATGCTGATGAAGGAGTATCCCATGGCTTTGAATGCAACATATGCCTAGACTCAGTTCAAGATCCTGTTGTAACACTTTGTGGTCATCTCTTCTGTTGGCCCTGCATTTACAAATGGATCCATTACAAGAGCTTGTCCTCACAGCAACAATGCCAGCAAGAGGAATGTCGATGTCCCGTTTGCAAGGCCGAGGTCTCCCACGCCACGCTCGTCCCACTTTACGGCAAATTTCAGACTACACCTCCCTCCAAAACTAAACCACCATCAAATCTTGGTCCAGCCATCCCACGCCGGCCTCTTGGTCCTGCCTGTGGGGCAGAGCCACCAGCATCTCCAAGCGCTCAGCTTCATCATCACAACTATTCTCAGTCACACGACGATTACATCGCTTCATCGATGCTTAGCTCGAGCAGTATTACAACGAACATTATCCATCCAGTGATCGGAATGTTCGGTGACGCAGTTTACACAAGAACGTTTGGAAACACGACAACAAACCTTTATACTTATCCTAATTCATATGGTCATGTAAGCAATAGTAGTGTAAGGCTGAGGAGGCACATAATGCAGGCTGATGAGTCGCTGAGCAGAATCTGTTTCTTCCTGTTTTGTTGCTTAGTGTTGTGTCTTTTATTATTCTAAGCCGCTTGCTTTAGATCATTTCTAGCCATTGGATGTATATATATATATAGATATAGATATATAACATGTCAATACGAGCTTAGTGTAACCATGAATGGATTCACATTGCTTTGATTTGGACATTTCGTAAGCAATCGGTAAGGTGCTGCATTTGTGACCCATCTTCCACATAACACGTCTACTCACCATGTTTTGAAGCTCCAATTGAGTGGAATCGGACTGGATTTTATGGCCTGTTCGTCTGTTTATAATGGAGT

mRNA sequence

TCATGAAAATAGGATGTTTATGAGAGAAAAAAAAGGGATTTGATTGAAGAGATAGCAGAGGTTGAAAGGATACCAATGTTTTTTTTGTCGTATTCAGTTATTTGCATTAAGCTGAGACGCCGCATCGTCATCGTCCCATCCTCTTCCCTTTCCCTTCCTTTTTCTATTTCCGTAGAATTACAGATACCTTTCCCTATATAAACACCCTTCAAAACTCACCATCACTCTGTTCTTAATTTTACGCCCATTTAGCCCTTTTCAACTAAGCTTCTTACTCATCCCGCGATTCGCTTTCGATGGAGCAGCTGTACCTTGTTCCAGATGCTGATGAAGGAGTATCCCATGGCTTTGAATGCAACATATGCCTAGACTCAGTTCAAGATCCTGTTGTAACACTTTGTGGTCATCTCTTCTGTTGGCCCTGCATTTACAAATGGATCCATTACAAGAGCTTGTCCTCACAGCAACAATGCCAGCAAGAGGAATGTCGATGTCCCGTTTGCAAGGCCGAGGTCTCCCACGCCACGCTCGTCCCACTTTACGGCAAATTTCAGACTACACCTCCCTCCAAAACTAAACCACCATCAAATCTTGGTCCAGCCATCCCACGCCGGCCTCTTGGTCCTGCCTGTGGGGCAGAGCCACCAGCATCTCCAAGCGCTCAGCTTCATCATCACAACTATTCTCAGTCACACGACGATTACATCGCTTCATCGATGCTTAGCTCGAGCAGTATTACAACGAACATTATCCATCCAGTGATCGGAATGTTCGGTGACGCAGTTTACACAAGAACGTTTGGAAACACGACAACAAACCTTTATACTTATCCTAATTCATATGGTCATGTAAGCAATAGTAGTGTAAGGCTGAGGAGGCACATAATGCAGGCTGATGAGTCGCTGAGCAGAATCTGTTTCTTCCTGTTTTGTTGCTTAGTGTTGTGTCTTTTATTATTCTAAGCCGCTTGCTTTAGATCATTTCTAGCCATTGGATGTATATATATATATAGATATAGATATATAACATGTCAATACGAGCTTAGTGTAACCATGAATGGATTCACATTGCTTTGATTTGGACATTTCGTAAGCAATCGGTAAGGTGCTGCATTTGTGACCCATCTTCCACATAACACGTCTACTCACCATGTTTTGAAGCTCCAATTGAGTGGAATCGGACTGGATTTTATGGCCTGTTCGTCTGTTTATAATGGAGT

Coding sequence (CDS)

ATGGAGCAGCTGTACCTTGTTCCAGATGCTGATGAAGGAGTATCCCATGGCTTTGAATGCAACATATGCCTAGACTCAGTTCAAGATCCTGTTGTAACACTTTGTGGTCATCTCTTCTGTTGGCCCTGCATTTACAAATGGATCCATTACAAGAGCTTGTCCTCACAGCAACAATGCCAGCAAGAGGAATGTCGATGTCCCGTTTGCAAGGCCGAGGTCTCCCACGCCACGCTCGTCCCACTTTACGGCAAATTTCAGACTACACCTCCCTCCAAAACTAAACCACCATCAAATCTTGGTCCAGCCATCCCACGCCGGCCTCTTGGTCCTGCCTGTGGGGCAGAGCCACCAGCATCTCCAAGCGCTCAGCTTCATCATCACAACTATTCTCAGTCACACGACGATTACATCGCTTCATCGATGCTTAGCTCGAGCAGTATTACAACGAACATTATCCATCCAGTGATCGGAATGTTCGGTGACGCAGTTTACACAAGAACGTTTGGAAACACGACAACAAACCTTTATACTTATCCTAATTCATATGGTCATGTAAGCAATAGTAGTGTAAGGCTGAGGAGGCACATAATGCAGGCTGATGAGTCGCTGAGCAGAATCTGTTTCTTCCTGTTTTGTTGCTTAGTGTTGTGTCTTTTATTATTCTAA

Protein sequence

MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPASPSAQLHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF

Homology

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BLAST of Cp4.1LG16g07810 vs. Swiss-Prot
Match: RMA1_CAPAN (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.3e-55
Identity = 115/227 (50.66%), Postives = 148/227 (65.20%), Query Frame = 1


Query: 9   DADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPV 68
           + +E +S GF+CNICLD V +PV+TLCGHL+CWPCIYKWI+++S+SS+   QQ+  +CPV
Sbjct: 30  EVEENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQP-QCPV 89

Query: 69  CKAEVSHATLVPLYGKF-QTTPPSKTKPPSNLGPAIPRRPLGPACGAE-----PPASPSA 128
           CKAEVS  TL+PLYG+  Q+T PS+ K P NLG  IP+RP  P CG         ++PS 
Sbjct: 90  CKAEVSEKTLIPLYGRGGQSTKPSEGKAP-NLGIVIPQRPPSPRCGGHFLLPTTDSNPSQ 149

Query: 129 QLHHHNYSQSHD--------DYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTN 188
            L    Y Q            Y++S MLS    T N++     M G+  Y R FGN++T 
Sbjct: 150 LLQRRGYQQQSQTRQPAYQGSYMSSPMLSPGGATANMLQH--SMIGEVAYARIFGNSSTT 209

Query: 189 LYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           +YTYPNSY    +SS R+RR + QAD SL RICFFLFCC V CL+LF
Sbjct: 210 MYTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCLILF 252

[Close]

BLAST of Cp4.1LG16g07810 vs. Swiss-Prot
Match: RMA1_ARATH (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 9.6e-46
Identity = 103/220 (46.82%), Postives = 141/220 (64.09%), Query Frame = 1


Query: 10  ADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPVC 69
           +D+     F+CNICLDSVQ+PVVTLCGHLFCWPCI+KW+  +S S+  + Q+   +CPVC
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHR-QCPVC 97

Query: 70  KAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPASPSA------- 129
           K++VSH+TLVPLYG+ + T   + K       ++P+RP+GP    E P SP A       
Sbjct: 98  KSKVSHSTLVPLYGRGRCTTQEEGKN------SVPKRPVGPVYRLEMPNSPYASTDLRLS 157

Query: 130 QLHHHNYSQSHDDYIASSMLSSSSITTN-IIHPVIGMFGDAVYTRTFGNTTTNLYTYPNS 189
           Q  H N S     Y  S ++SS+S++ + ++ PV+ M G+ V TR FG    + + YP++
Sbjct: 158 QRVHFN-SPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDT 217

Query: 190 YGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           Y     S  R+RR IMQAD+SL RI FF  CC+VLCLLLF
Sbjct: 218 YNLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Cp4.1LG16g07810 vs. Swiss-Prot
Match: RMA3_ARATH (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-35
Identity = 95/233 (40.77%), Postives = 128/233 (54.94%), Query Frame = 1


Query: 4   LYLVPDADEGVSHG-FECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQE 63
           L   P A +    G F+CNICLD+  DPVVTLCGHLFCWPCIYKW+H +   S     Q 
Sbjct: 27  LTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQ--LSSVSVDQH 86

Query: 64  ECRCPVCKAEVSHATLVPLYGKFQTTPPSK--TKPPSNLGPAIPRRPLGPACGAEPPASP 123
           +  CPVCK+ ++  +LVPLYG+  ++P S   +K    L   IPRRP  P+    P  S 
Sbjct: 87  QNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP-APSALRNPITSA 146

Query: 124 SA------------QLHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTF 183
           S+              H+H YS        S+ L ++++  + ++PVIGMFGD VYTR F
Sbjct: 147 SSLNPSLQHQTLSPSFHNHQYSPRGFTTTESTDL-ANAVMMSFLYPVIGMFGDLVYTRIF 206

Query: 184 GNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           G T TN    P              + +MQ ++SL+R+  F  CC++LCLLLF
Sbjct: 207 G-TFTNTIAQPYQ-----------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Cp4.1LG16g07810 vs. Swiss-Prot
Match: RMA2_ARATH (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.9e-32
Identity = 86/209 (41.15%), Postives = 112/209 (53.59%), Query Frame = 1


Query: 18  FECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQ-----EECRCPVCKAE 77
           F+CNICLD V+DPVVTLCGHLFCWPCI+KW  Y S +S+Q+  Q     E  +CPVCK++
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWT-YASNNSRQRVDQYDHKREPPKCPVCKSD 78

Query: 78  VSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPASPSAQLHHHNYSQS 137
           VS ATLVP+YG+ Q  P S        G  +P RP GP            +     Y   
Sbjct: 79  VSEATLVPIYGRGQKAPQS--------GSNVPSRPTGPVYDLRGVGQRLGEGESQRYMYR 138

Query: 138 HDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYPNSYGHVSNSSVRL 197
             D                  PV+G+  + VY R FG +++N+  Y        + +VR 
Sbjct: 139 MPD------------------PVMGVVCEMVYRRLFGESSSNMAPY-------RDMNVRS 193

Query: 198 RRHIMQADESLSRICFFLFCCLVLCLLLF 222
           RR  MQA+ESLSR+  FL C + +CL LF
Sbjct: 199 RRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Cp4.1LG16g07810 vs. Swiss-Prot
Match: RN185_RAT (E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-15
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 1


Query: 13  GVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPVCKAE 72
           G    FECNICLD+ +D V++LCGHLFCWPC+++W+         + +     CPVCKA 
Sbjct: 32  GQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWL---------ETRPNRQVCPVCKAG 91

Query: 73  VSHATLVPLYGKFQT---TPPSKTKP 96
           +S   ++PLYG+  T    P  KT P
Sbjct: 92  ISRDKVIPLYGRGSTGQQDPREKTPP 108

[Close]

BLAST of Cp4.1LG16g07810 vs. TrEMBL
Match: A0A0A0KB39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128040 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 3.3e-93
Identity = 176/228 (77.19%), Postives = 195/228 (85.53%), Query Frame = 1


Query: 3   QLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQE 62
           Q+Y + DA++  SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+H K LS+ Q+CQQ 
Sbjct: 27  QIY-ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSA-QRCQQV 86

Query: 63  ECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLG-PACGAEPPASPS 122
           ECRCPVCKA+VS ATLVP+YGKFQTT  SK + P NLGPAIPRRPLG  AC AE PASP+
Sbjct: 87  ECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPT 146

Query: 123 AQLHHHNYS--------QSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTT 182
            QLH  NYS        Q+ ++YIASSMLSSSSITTNIIHPVIGMFGD +Y RTFGNTTT
Sbjct: 147 PQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTT 206

Query: 183 NLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           NLYTYPNSYG+V+NSSVRLRRHIMQADESLSRICFF FCCLV+CLLLF
Sbjct: 207 NLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 252

[Close]

BLAST of Cp4.1LG16g07810 vs. TrEMBL
Match: W9STC6_9ROSA (E3 ubiquitin-protein ligase OS=Morus notabilis GN=L484_009813 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.9e-65
Identity = 132/223 (59.19%), Postives = 156/223 (69.96%), Query Frame = 1


Query: 9   DADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPV 68
           D D   S GF+CNICLD+V DPVVTLCGHLFCWPCIYKW+H++S   +QQ QQ    CPV
Sbjct: 33  DGDNNPSTGFDCNICLDTVHDPVVTLCGHLFCWPCIYKWLHFQSTQEEQQQQQ----CPV 92

Query: 69  CKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPA---SPSAQLH 128
           CKAEVS A+LVPLYG+ QTT PSK K P NLG  IP+RPLGP  G + P+   SP     
Sbjct: 93  CKAEVSQASLVPLYGRGQTTKPSKGKAP-NLGIVIPKRPLGPFYGVDSPSVLTSPHMSQQ 152

Query: 129 HHNY-------SQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTY 188
            + Y       S     +  S MLS S + TN+  P IG+FG+ +Y R FGN+ TNLYTY
Sbjct: 153 FYRYPHQSQLNSSRRGSHAPSPMLSPSGVATNLFDPTIGIFGEMIYARVFGNSITNLYTY 212

Query: 189 PNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           PNSY  V N+S R+RRH+MQAD+SL R+CFFLFCC VLCLLLF
Sbjct: 213 PNSYNLVGNASPRVRRHVMQADKSLGRVCFFLFCCSVLCLLLF 250

[Close]

BLAST of Cp4.1LG16g07810 vs. TrEMBL
Match: A0A061EAU9_THECC (RING membrane-anchor 1, putative isoform 1 OS=Theobroma cacao GN=TCM_008094 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.4e-64
Identity = 127/222 (57.21%), Postives = 160/222 (72.07%), Query Frame = 1


Query: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRC 66
           V D+D+  S GF+CNICLDSVQDPVVTLCGHL+CWPCIYKW+H++++S++ Q +Q++ +C
Sbjct: 34  VTDSDDNPSGGFDCNICLDSVQDPVVTLCGHLYCWPCIYKWLHFQTISTENQ-EQKQQQC 93

Query: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPASPSAQLHH 126
           PVCKAEVSH TLVPLYG+  TT  S+ K P      IP+RPL P       +  + QLHH
Sbjct: 94  PVCKAEVSHTTLVPLYGRGLTTKASRGKTPQ-FDVVIPKRPLAPTPNTTNSSQFAQQLHH 153

Query: 127 HNYSQS-------HDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 186
             YS         H  Y AS +LS   +T N++ PV  MFG+ VYTR FGN+ TNLYTYP
Sbjct: 154 RGYSYQPQMSYPQHGSYPASPLLSPGGMTINVLDPVTRMFGEMVYTRVFGNSITNLYTYP 213

Query: 187 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           NSY    ++S R+RRH+MQAD+SLSRI FFLFCC++LCLLLF
Sbjct: 214 NSYNLAGSTSPRIRRHVMQADKSLSRISFFLFCCIILCLLLF 253

[Close]

BLAST of Cp4.1LG16g07810 vs. TrEMBL
Match: B9N2C6_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s13210g PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.2e-64
Identity = 132/229 (57.64%), Postives = 163/229 (71.18%), Query Frame = 1


Query: 9   DADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPV 68
           D+DE  S+GF+CNICLDSVQDPVVTLCGHL+CWPCIYKW+H +S+S++ Q QQ + +CPV
Sbjct: 36  DSDESPSNGFDCNICLDSVQDPVVTLCGHLYCWPCIYKWLHSQSISAENQDQQPQQQCPV 95

Query: 69  CKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPASPSA------ 128
           CKAEVS +T+VPL+G+ QTT PS  K P N+G  IP RP G ACG + P +P A      
Sbjct: 96  CKAEVSQSTIVPLFGRGQTTKPSMRKAP-NVGIIIPHRPPGLACGFDSPRTPIATGSPRP 155

Query: 129 --QLHH-HNY---SQSH----DDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTT 188
             Q+HH HNY   SQ H      Y AS M S    T N+  PV+GMFG+ +Y R FGN+ 
Sbjct: 156 VQQIHHRHNYPHQSQLHYSQPGSYSASPMHSPRGTTINMADPVVGMFGEMIYARVFGNSI 215

Query: 189 TNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           TN+ +YPNSY    ++S R+RRH+MQAD SLSRICFFLFCC+ LC L F
Sbjct: 216 TNMPSYPNSYHLAGSASPRVRRHVMQADRSLSRICFFLFCCVFLCFLSF 263

[Close]

BLAST of Cp4.1LG16g07810 vs. TrEMBL
Match: A0A067JX84_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25796 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.7e-63
Identity = 123/230 (53.48%), Postives = 163/230 (70.87%), Query Frame = 1


Query: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRC 66
           + D+++  S GFECNICLDSVQ+PVVTLCGHL+CWPCIYKW+H++S+S++ +  + + +C
Sbjct: 29  IADSEDSTSSGFECNICLDSVQEPVVTLCGHLYCWPCIYKWLHFQSISAENEDLEPQQQC 88

Query: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPAS------- 126
           PVCKAEVS  TLVPL+G+ QT  PSK+K P NLG  IPRRPLG ACG + P S       
Sbjct: 89  PVCKAEVSEGTLVPLFGRGQTAKPSKSKAP-NLGIIIPRRPLGLACGFDSPRSPFMTSSP 148

Query: 127 -PSAQLHHHNYSQSHDDYIA-------SSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNT 186
            P+ Q ++ NY+     Y +       S M++      N+  PVIGMFG+ +Y R FGN+
Sbjct: 149 QPTQQTYNRNYTNHSQVYYSRPGGYSPSPMINPRVTAANMFDPVIGMFGEMIYARVFGNS 208

Query: 187 TTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
            TN+Y+YP+SY    ++S R+RRH+MQAD+SLSRICFFLFCC+ LC L F
Sbjct: 209 VTNIYSYPDSYNLAGSTSPRVRRHVMQADKSLSRICFFLFCCVFLCFLSF 257

[Close]

BLAST of Cp4.1LG16g07810 vs. TAIR10
Match: AT4G03510.1 (AT4G03510.1 RING membrane-anchor 1)

HSP 1 Score: 184.9 bits (468), Expect = 5.4e-47
Identity = 103/220 (46.82%), Postives = 141/220 (64.09%), Query Frame = 1


Query: 10  ADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPVC 69
           +D+     F+CNICLDSVQ+PVVTLCGHLFCWPCI+KW+  +S S+  + Q+   +CPVC
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHR-QCPVC 97

Query: 70  KAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPASPSA------- 129
           K++VSH+TLVPLYG+ + T   + K       ++P+RP+GP    E P SP A       
Sbjct: 98  KSKVSHSTLVPLYGRGRCTTQEEGKN------SVPKRPVGPVYRLEMPNSPYASTDLRLS 157

Query: 130 QLHHHNYSQSHDDYIASSMLSSSSITTN-IIHPVIGMFGDAVYTRTFGNTTTNLYTYPNS 189
           Q  H N S     Y  S ++SS+S++ + ++ PV+ M G+ V TR FG    + + YP++
Sbjct: 158 QRVHFN-SPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDT 217

Query: 190 YGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           Y     S  R+RR IMQAD+SL RI FF  CC+VLCLLLF
Sbjct: 218 YNLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Cp4.1LG16g07810 vs. TAIR10
Match: AT4G27470.1 (AT4G27470.1 RING membrane-anchor 3)

HSP 1 Score: 151.0 bits (380), Expect = 8.7e-37
Identity = 95/233 (40.77%), Postives = 128/233 (54.94%), Query Frame = 1


Query: 4   LYLVPDADEGVSHG-FECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQE 63
           L   P A +    G F+CNICLD+  DPVVTLCGHLFCWPCIYKW+H +   S     Q 
Sbjct: 27  LTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQ--LSSVSVDQH 86

Query: 64  ECRCPVCKAEVSHATLVPLYGKFQTTPPSK--TKPPSNLGPAIPRRPLGPACGAEPPASP 123
           +  CPVCK+ ++  +LVPLYG+  ++P S   +K    L   IPRRP  P+    P  S 
Sbjct: 87  QNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP-APSALRNPITSA 146

Query: 124 SA------------QLHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTF 183
           S+              H+H YS        S+ L ++++  + ++PVIGMFGD VYTR F
Sbjct: 147 SSLNPSLQHQTLSPSFHNHQYSPRGFTTTESTDL-ANAVMMSFLYPVIGMFGDLVYTRIF 206

Query: 184 GNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           G T TN    P              + +MQ ++SL+R+  F  CC++LCLLLF
Sbjct: 207 G-TFTNTIAQPYQ-----------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Cp4.1LG16g07810 vs. TAIR10
Match: AT4G28270.1 (AT4G28270.1 RING membrane-anchor 2)

HSP 1 Score: 138.7 bits (348), Expect = 4.5e-33
Identity = 86/209 (41.15%), Postives = 112/209 (53.59%), Query Frame = 1


Query: 18  FECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQ-----EECRCPVCKAE 77
           F+CNICLD V+DPVVTLCGHLFCWPCI+KW  Y S +S+Q+  Q     E  +CPVCK++
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWT-YASNNSRQRVDQYDHKREPPKCPVCKSD 78

Query: 78  VSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPASPSAQLHHHNYSQS 137
           VS ATLVP+YG+ Q  P S        G  +P RP GP            +     Y   
Sbjct: 79  VSEATLVPIYGRGQKAPQS--------GSNVPSRPTGPVYDLRGVGQRLGEGESQRYMYR 138

Query: 138 HDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYPNSYGHVSNSSVRL 197
             D                  PV+G+  + VY R FG +++N+  Y        + +VR 
Sbjct: 139 MPD------------------PVMGVVCEMVYRRLFGESSSNMAPY-------RDMNVRS 193

Query: 198 RRHIMQADESLSRICFFLFCCLVLCLLLF 222
           RR  MQA+ESLSR+  FL C + +CL LF
Sbjct: 199 RRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Cp4.1LG16g07810 vs. TAIR10
Match: AT1G19310.1 (AT1G19310.1 RING/U-box superfamily protein)

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-24
Identity = 59/124 (47.58%), Postives = 68/124 (54.84%), Query Frame = 1


Query: 9   DADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPV 68
           D +   S  FECNICLD  QDP+VTLCGHLFCWPC+YKW+H  S S           CPV
Sbjct: 12  DTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKD---------CPV 71

Query: 69  CKAEVSHATLVPLY--GKFQTTPPSKTKPPSNLGPAIPRRPLGPAC-GAEPPASPSAQLH 128
           CKA +    LVPLY  GK    P SK+ P    G  +P RP G     A+PP       H
Sbjct: 72  CKAVIEEDRLVPLYGRGKSSADPRSKSIP----GLEVPNRPSGQRPETAQPPDPNHGFAH 122

Query: 129 HHNY 130
           HH +
Sbjct: 132 HHGF 122

[Close]

BLAST of Cp4.1LG16g07810 vs. TAIR10
Match: AT1G74990.1 (AT1G74990.1 RING/U-box superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-23
Identity = 54/124 (43.55%), Postives = 69/124 (55.65%), Query Frame = 1


Query: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRC 66
           + + ++  S+ F CNICL+  ++P+VTLCGHLFCWPC+YKW+HY S S+          C
Sbjct: 6   ITNEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSN---------HC 65

Query: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPASPSAQLHH 126
           PVCKA V   TLVPLYG     P S  +   N G  +P R   PA      A P  +  H
Sbjct: 66  PVCKALVKEDTLVPLYG--MGKPSSDPRSKLNSGVTVPNR---PAATRTETARPRLEQRH 115

Query: 127 HNYS 131
           H  S
Sbjct: 126 HGSS 115

[Close]

BLAST of Cp4.1LG16g07810 vs. NCBI nr
Match: gi|659094879|ref|XP_008448288.1| (PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo])

HSP 1 Score: 350.5 bits (898), Expect = 2.1e-93
Identity = 174/224 (77.68%), Postives = 192/224 (85.71%), Query Frame = 1


Query: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRC 66
           + DA++  SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+H K LS+QQ CQQ ECRC
Sbjct: 30  ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHSKKLSAQQ-CQQVECRC 89

Query: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLG-PACGAEPPASPSAQLH 126
           PVCKA+VS ATL+P+YGKFQTT  SK K P NLGPAIPRRPLG  AC AE PASP+ QLH
Sbjct: 90  PVCKAKVSRATLIPIYGKFQTTDASKAKAPPNLGPAIPRRPLGWHACEAETPASPTPQLH 149

Query: 127 HHN--------YSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYT 186
            HN        YSQ+ ++YI+SSMLSSSSITTNIIHPVIGMFGD +Y RT GNTTTNLY+
Sbjct: 150 SHNYSPQSHSYYSQTQNEYISSSMLSSSSITTNIIHPVIGMFGDTIYPRTLGNTTTNLYS 209

Query: 187 YPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           YPNSYG+VSNSSVRLRRHIMQADESLSRICFF FCCLV+CLLLF
Sbjct: 210 YPNSYGNVSNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 252

[Close]

BLAST of Cp4.1LG16g07810 vs. NCBI nr
Match: gi|449444358|ref|XP_004139942.1| (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 4.7e-93
Identity = 176/228 (77.19%), Postives = 195/228 (85.53%), Query Frame = 1


Query: 3   QLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQE 62
           Q+Y + DA++  SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+H K LS+ Q+CQQ 
Sbjct: 27  QIY-ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSA-QRCQQV 86

Query: 63  ECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLG-PACGAEPPASPS 122
           ECRCPVCKA+VS ATLVP+YGKFQTT  SK + P NLGPAIPRRPLG  AC AE PASP+
Sbjct: 87  ECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPT 146

Query: 123 AQLHHHNYS--------QSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTT 182
            QLH  NYS        Q+ ++YIASSMLSSSSITTNIIHPVIGMFGD +Y RTFGNTTT
Sbjct: 147 PQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTT 206

Query: 183 NLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           NLYTYPNSYG+V+NSSVRLRRHIMQADESLSRICFF FCCLV+CLLLF
Sbjct: 207 NLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 252

[Close]

BLAST of Cp4.1LG16g07810 vs. NCBI nr
Match: gi|1009128748|ref|XP_015881403.1| (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Ziziphus jujuba])

HSP 1 Score: 263.1 bits (671), Expect = 4.5e-67
Identity = 137/222 (61.71%), Postives = 162/222 (72.97%), Query Frame = 1


Query: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRC 66
           V D D   + GFECNICLD+V DPVVTLCGHLFCWPCIYKW+H++S SS+ + Q  + +C
Sbjct: 34  VADFDNDSAGGFECNICLDTVHDPVVTLCGHLFCWPCIYKWLHFQSASSETEDQTPQ-QC 93

Query: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPASPSAQ-LH 126
           PVCKAEVS A+LVPLYG+ QTT PSK K P NLG  IPRRPLGP CG + P+  + Q L+
Sbjct: 94  PVCKAEVSQASLVPLYGRGQTTKPSKGKAP-NLGIVIPRRPLGPICGFDSPSQHTTQQLY 153

Query: 127 HHNY------SQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 186
           + NY      + S   Y AS MLS    TTNI  P IGM G+ +Y R FGN+ TNLYTYP
Sbjct: 154 YQNYPNQSQLNYSQRGYSASPMLSPGGSTTNIFDPTIGMLGEMIYARVFGNSMTNLYTYP 213

Query: 187 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           NSY    +SS R+RRH+MQAD SLSRI FFLFCC++LCLLLF
Sbjct: 214 NSYHLAGSSSPRVRRHVMQADRSLSRITFFLFCCVILCLLLF 253

[Close]

BLAST of Cp4.1LG16g07810 vs. NCBI nr
Match: gi|703151773|ref|XP_010110208.1| (E3 ubiquitin-protein ligase [Morus notabilis])

HSP 1 Score: 256.5 bits (654), Expect = 4.2e-65
Identity = 132/223 (59.19%), Postives = 156/223 (69.96%), Query Frame = 1


Query: 9   DADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPV 68
           D D   S GF+CNICLD+V DPVVTLCGHLFCWPCIYKW+H++S   +QQ QQ    CPV
Sbjct: 33  DGDNNPSTGFDCNICLDTVHDPVVTLCGHLFCWPCIYKWLHFQSTQEEQQQQQ----CPV 92

Query: 69  CKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPA---SPSAQLH 128
           CKAEVS A+LVPLYG+ QTT PSK K P NLG  IP+RPLGP  G + P+   SP     
Sbjct: 93  CKAEVSQASLVPLYGRGQTTKPSKGKAP-NLGIVIPKRPLGPFYGVDSPSVLTSPHMSQQ 152

Query: 129 HHNY-------SQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTY 188
            + Y       S     +  S MLS S + TN+  P IG+FG+ +Y R FGN+ TNLYTY
Sbjct: 153 FYRYPHQSQLNSSRRGSHAPSPMLSPSGVATNLFDPTIGIFGEMIYARVFGNSITNLYTY 212

Query: 189 PNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           PNSY  V N+S R+RRH+MQAD+SL R+CFFLFCC VLCLLLF
Sbjct: 213 PNSYNLVGNASPRVRRHVMQADKSLGRVCFFLFCCSVLCLLLF 250

[Close]

BLAST of Cp4.1LG16g07810 vs. NCBI nr
Match: gi|590690709|ref|XP_007043582.1| (RING membrane-anchor 1, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 254.2 bits (648), Expect = 2.1e-64
Identity = 127/222 (57.21%), Postives = 160/222 (72.07%), Query Frame = 1


Query: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRC 66
           V D+D+  S GF+CNICLDSVQDPVVTLCGHL+CWPCIYKW+H++++S++ Q +Q++ +C
Sbjct: 34  VTDSDDNPSGGFDCNICLDSVQDPVVTLCGHLYCWPCIYKWLHFQTISTENQ-EQKQQQC 93

Query: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPASPSAQLHH 126
           PVCKAEVSH TLVPLYG+  TT  S+ K P      IP+RPL P       +  + QLHH
Sbjct: 94  PVCKAEVSHTTLVPLYGRGLTTKASRGKTPQ-FDVVIPKRPLAPTPNTTNSSQFAQQLHH 153

Query: 127 HNYSQS-------HDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 186
             YS         H  Y AS +LS   +T N++ PV  MFG+ VYTR FGN+ TNLYTYP
Sbjct: 154 RGYSYQPQMSYPQHGSYPASPLLSPGGMTINVLDPVTRMFGEMVYTRVFGNSITNLYTYP 213

Query: 187 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           NSY    ++S R+RRH+MQAD+SLSRI FFLFCC++LCLLLF
Sbjct: 214 NSYNLAGSTSPRIRRHVMQADKSLSRISFFLFCCIILCLLLF 253

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g07810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RMA1_CAPAN	2.3e-55	50.66	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1	[more]
RMA1_ARATH	9.6e-46	46.82	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1 PE=1 SV=1	[more]
RMA3_ARATH	1.5e-35	40.77	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1	[more]
RMA2_ARATH	7.9e-32	41.15	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2 PE=1 SV=1	[more]
RN185_RAT	1.4e-15	44.19	E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1	[more]

BLAST of Cp4.1LG16g07810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB39_CUCSA	3.3e-93	77.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128040 PE=4 SV=1	[more]
W9STC6_9ROSA	2.9e-65	59.19	E3 ubiquitin-protein ligase OS=Morus notabilis GN=L484_009813 PE=4 SV=1	[more]
A0A061EAU9_THECC	1.4e-64	57.21	RING membrane-anchor 1, putative isoform 1 OS=Theobroma cacao GN=TCM_008094 PE=4...	[more]
B9N2C6_POPTR	3.2e-64	57.64	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s13210g PE=4 SV=1	[more]
A0A067JX84_JATCU	2.7e-63	53.48	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25796 PE=4 SV=1	[more]

BLAST of Cp4.1LG16g07810 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03510.1	5.4e-47	46.82	RING membrane-anchor 1	[more]
AT4G27470.1	8.7e-37	40.77	RING membrane-anchor 3	[more]
AT4G28270.1	4.5e-33	41.15	RING membrane-anchor 2	[more]
AT1G19310.1	1.7e-24	47.58	RING/U-box superfamily protein	[more]
AT1G74990.1	2.5e-23	43.55	RING/U-box superfamily protein	[more]

BLAST of Cp4.1LG16g07810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094879\|ref\|XP_008448288.1\|	2.1e-93	77.68	PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo]	[more]
gi\|449444358\|ref\|XP_004139942.1\|	4.7e-93	77.19	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus]	[more]
gi\|1009128748\|ref\|XP_015881403.1\|	4.5e-67	61.71	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Ziziphus jujuba]	[more]
gi\|703151773\|ref\|XP_010110208.1\|	4.2e-65	59.19	E3 ubiquitin-protein ligase [Morus notabilis]	[more]
gi\|590690709\|ref\|XP_007043582.1\|	2.1e-64	57.21	RING membrane-anchor 1, putative isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027370	Znf-RING_LisH
IPR017907	Znf_RING_CS
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g07810.1	Cp4.1LG16g07810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 20..69 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 20..70 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 11..81 score: 4.1
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 35..44 scor
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 20..67 score: 1.
None	No IPR available	PANTHER	PTHR12313	RNF5	coord: 9..221 score: 8.3
None	No IPR available	PANTHER	PTHR12313:SF5	SUBFAMILY NOT NAMED	coord: 9..221 score: 8.3
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 14..82 score: 1.77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG16g07810	Cucsa.119060	Cucumber (Gy14) v1	cgycpeB0294
Cp4.1LG16g07810	CmaCh11G018740	Cucurbita maxima (Rimu)	cmacpeB124
Cp4.1LG16g07810	CmaCh19G009850	Cucurbita maxima (Rimu)	cmacpeB527
Cp4.1LG16g07810	CmaCh20G001960	Cucurbita maxima (Rimu)	cmacpeB564
Cp4.1LG16g07810	CmoCh19G010200	Cucurbita moschata (Rifu)	cmocpeB485
Cp4.1LG16g07810	CmoCh11G019510	Cucurbita moschata (Rifu)	cmocpeB101
Cp4.1LG16g07810	CmoCh20G002150	Cucurbita moschata (Rifu)	cmocpeB517
Cp4.1LG16g07810	Cla013565	Watermelon (97103) v1	cpewmB303
Cp4.1LG16g07810	Csa6G128040	Cucumber (Chinese Long) v2	cpecuB287
Cp4.1LG16g07810	MELO3C013615	Melon (DHL92) v3.5.1	cpemeB263
Cp4.1LG16g07810	ClCG02G017600	Watermelon (Charleston Gray)	cpewcgB266
Cp4.1LG16g07810	CSPI06G10480	Wild cucumber (PI 183967)	cpecpiB290
Cp4.1LG16g07810	Lsi10G008930	Bottle gourd (USVL1VR-Ls)	cpelsiB228
Cp4.1LG16g07810	MELO3C013615.2	Melon (DHL92) v3.6.1	cpemedB308
Cp4.1LG16g07810	CsaV3_6G012970	Cucumber (Chinese Long) v3	cpecucB0354
Cp4.1LG16g07810	Bhi10G000869	Wax gourd	cpewgoB0353
Cp4.1LG16g07810	CsGy6G010600	Cucumber (Gy14) v2	cgybcpeB760
Cp4.1LG16g07810	Carg18451	Silver-seed gourd	carcpeB0579

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG16g07810	Cp4.1LG15g08030	Cucurbita pepo (Zucchini)	cpecpeB256
Cp4.1LG16g07810	Cp4.1LG04g03050	Cucurbita pepo (Zucchini)	cpecpeB306

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG16g07810	Cucurbita pepo (Zucchini)	cpecpeB317
Cp4.1LG16g07810	Cucurbita maxima (Rimu)	cmacpeB620
Cp4.1LG16g07810	Cucurbita moschata (Rifu)	cmocpeB570
Cp4.1LG16g07810	Melon (DHL92) v3.5.1	cpemeB252
Cp4.1LG16g07810	Melon (DHL92) v3.6.1	cpemedB297
Cp4.1LG16g07810	Silver-seed gourd	carcpeB0044