Cucsa.119060 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.119060
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	E3 ubiquitin-protein ligase RMA1H1
Location	scaffold00998 : 972400 .. 974930 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCGCATCGTCATCGTCCCATCGTCTCTTCTATATCCATTCTTTTTCCCATTTCTATTGAATTTCAGATTCCTTCGCTCTTCTCGCTTTTTATATAAACTCCCTCTCAACCCTCCACCCTCCACATCGCCCTCTTCAAATTCATATTCCTTCTTCTTCCTCCTCCTCTCTCAACCAACCTTTTTAACTCTCACGCAGATACTAATCCGCCGATTAAATTTTGGTACGTTTCTGTTCCCCCCTTCTGTATGACTCTTAGATGGGACTGTGTTTCTCAGTGGATTAAGCTTTAGATCTGTTTGCCAATGTATATGGGTATTTTTTTtCGTTtAGGTTTCTTCCTTTCGAGACCTCTGATGgAGAtGGGGTtCTTtGTTTTtGGTTTTtgtAGTTTTTTTTTTttTTTTtttGtATaTCGCTTCGAaCTCCtATtCCCcTTTTTTTGTGGATGACTTTtGGGTTtCTTtGTTTtCTGAAaCGGTTTTATGTGTTGTGCAGGCGGAAAACTTTCATGCTCTGTTTTTGCTCtGTTTTTtAGAGATGTTTTATGTGGTGTGAGGGTGGGGgTGGATTCTTTCGATTGTTTtATTTTTtCCAAAGATTAATACGCCAATAGAACTTTAGTCAAGTGGTGAGTTACGAAAATCTTGTGTTCTTGTTGGGTCTTTTGAATAGAAAGTTCACTTGGATTTTCCACCTCTTTGGAAAATGGAAGAGTAGTTATGTGGAGTTCTGATTTCGATTGCAACTTGGGTTTTGATTCACCTGTATATTGTTTTTGGTTATTAATTGTTGGGTTTGTGATTTTTCTTCATTTAGGAAAATTCTTAGTTATGTATTTATGCCGTTCTGGTTTCTTCTATGCATGATTATGCCTCTCGGATCTGTTTTTCAAGTAACTGATCGAATTTATGTGTGTGCCTAAAGATTGATAGTTCTTTTCACTTTTCACCTGCACTGAGTTCATCTGCTTCAAAAGATGGCTTATGAATGCAGAAGATTCTGAATCTTTACCACGTTATGCAAGAAATTGGAACTTCTAACAATTTTATTAGGATAACGTAATCTAGGGAAGTTCTTGGATGGATTGTGTCTGTGAGAGTCATAACGAATCTCCATCATTTGAATTTCTTATTGATTAAATAAATTGAATCTGGGTCTGTCAAGATCAGCATGTTTTGATATTTATGGGAACTTCAGAAATCCTTGACACCATTCTCCACTTGGGGGTTTCGTGATAGAATTTTCAAGAGGCGACCATTCAGAATAGAATAATCTATAAGCTTACCCATGTTCGTGTCAGTTCTGGGACCCAATTAATATTATATTCGAAGCAGTGGATTAGGATGATTTGTTTTGCCGTTTCATCAGTTATCTTATCACTGCAATGAATGGGATGCTTTTGGTTTATTAATGAATTCCTAGTAAATCGTGCCTTTATAGCTTCTTGTCCGAATTGTTGATTCTTTTGTCTGCTTTTTTGCATCCTTGTATTTACAAACAGCAGCCTTTTACTGTGAATTTCTATTAGACTTTAGTTCTGAGTTCTGACCTTGTTTCTTGGATATGTTTATCAGCTTGAGGCATTATAGAAAGTAGACTGTGCTGAAACATAAACCTGGCCATGGAACAGGAGTACCTTGAAGAGACTTTGATGCAAAACGACAATTCATTAGGAGGAGACAAATTATGTTTAGACAACCAAATATATATTTCAGATGCTGAAGATGAAGCTTCCCATGGCTTTGACTGCAACATATGCCTAGACTCGGTTCAAGATCCTGTTGTAACCCTTTGTGGTCATCTCTTCTGTTGGCCCTGCATTTATAAATGGCTTCACTGCAAGAAATTATCTGCACAACGATGCCAACAAGTGGAATGCCGATGTCCTGTTTGCAAGGCCAAAGTCTCCCGTGCTACTCTCGTCCCAATCTACGGAAAATTTCAAACTACAGATGCCTCAAAAGCTGAAGCACCTCCAAATCTTGGCCCAGCCATCCCACGCAGGCCGCTCGGGCGGCATGCTTGTGAGGCAGAGACACCAGCATCTCCAACCACCCAACTTCATTCCGACAACTATTCTCCTCAGTCACACTCGTACTACGCACAAACACAAAACGAATACATCGCTTCGTCAATGCTTAGCTCAAGCAGTATCACAACAAACATTATCCATCCAGTGATCGGAATGTTTGGTGACACGATTTACGCAAGAACGTTTGGAAACACAACAACGAACCTGTACACTTATCCAAATTCATATGGTAATGTGAGCAACAGTAGTGTAAGACTGAGGAGGCACATAATGCAGGCTGATGAGTCACTGAGCAGAATCTGTTTTTCTTTTTTtGCTGCTTAGTAATATGTCTTCTTTTATTCTAAGAAGCTCCCTTTAGACCATTTCTAGGCATTGGATGTAGATATATACACATAGCATGTAACTATGAGCTTAGTGTAAAAAAGGGCTACAAAATTTCCTTCAATCTGTTTCAAGGAATTGGTGGATGTATAATGAAAATTATTTTATGTGGG

mRNA sequence

GCCGCATCGTCATCGTCCCATCGTCTCTTCTATATCCATTCTTTTTCCCATTTCTATTGAATTTCAGATTCCTTCGCTCTTCTCGCTTTTTATATAAACTCCCTCTCAACCCTCCACCCTCCACATCGCCCTCTTCAAATTCATATTCCTTCTTCTTCCTCCTCCTCTCTCAACCAACCTTTTTAACTCTCACGCAGATACTAATCCGCCGATTAAATTTTGGCGGAAAACTTTCATGCTCTGTTTTTGCTCTGTTTTTTAGAGATGTTTTATGTGGTGTGAGGGTGGGGGTGGATTCTTTCGATTGTTTTATTTTTTCCAAAGATTAATACGCCAATAGAACTTTAGTCAAGTGCTTGAGGCATTATAGAAAGTAGACTGTGCTGAAACATAAACCTGGCCATGGAACAGGAGTACCTTGAAGAGACTTTGATGCAAAACGACAATTCATTAGGAGGAGACAAATTATGTTTAGACAACCAAATATATATTTCAGATGCTGAAGATGAAGCTTCCCATGGCTTTGACTGCAACATATGCCTAGACTCGGTTCAAGATCCTGTTGTAACCCTTTGTGGTCATCTCTTCTGTTGGCCCTGCATTTATAAATGGCTTCACTGCAAGAAATTATCTGCACAACGATGCCAACAAGTGGAATGCCGATGTCCTGTTTGCAAGGCCAAAGTCTCCCGTGCTACTCTCGTCCCAATCTACGGAAAATTTCAAACTACAGATGCCTCAAAAGCTGAAGCACCTCCAAATCTTGGCCCAGCCATCCCACGCAGGCCGCTCGGGCGGCATGCTTGTGAGGCAGAGACACCAGCATCTCCAACCACCCAACTTCATTCCGACAACTATTCTCCTCAGTCACACTCGTACTACGCACAAACACAAAACGAATACATCGCTTCGTCAATGCTTAGCTCAAGCAGTATCACAACAAACATTATCCATCCAGTGATCGGAATGTTTGGTGACACGATTTACGCAAGAACGTTTGGAAACACAACAACGAACCTGTACACTTATCCAAATTCATATGGTAATGTGAGCAACAGTAGTGTAAGACTGAGGAGGCACATAATGCAGGCTGATGAGTCACTGAGCAGAATCTGTTTTTCTTTTTTTGCTGCTTAGTAATATGTCTTCTTTTATTCTAAGAAGCTCCCTTTAGACCATTTCTAGGCATTGGATGTAGATATATACACATAGCATGTAACTATGAGCTTAGTGTAAAAAAGGGCTACAAAATTTCCTTCAATCTGTTTCAAGGAATTGGTGGATGTATAATGAAAATTATTTTATGTGGG

Coding sequence (CDS)

ATGGAACAGGAGTACCTTGAAGAGACTTTGATGCAAAACGACAATTCATTAGGAGGAGACAAATTATGTTTAGACAACCAAATATATATTTCAGATGCTGAAGATGAAGCTTCCCATGGCTTTGACTGCAACATATGCCTAGACTCGGTTCAAGATCCTGTTGTAACCCTTTGTGGTCATCTCTTCTGTTGGCCCTGCATTTATAAATGGCTTCACTGCAAGAAATTATCTGCACAACGATGCCAACAAGTGGAATGCCGATGTCCTGTTTGCAAGGCCAAAGTCTCCCGTGCTACTCTCGTCCCAATCTACGGAAAATTTCAAACTACAGATGCCTCAAAAGCTGAAGCACCTCCAAATCTTGGCCCAGCCATCCCACGCAGGCCGCTCGGGCGGCATGCTTGTGAGGCAGAGACACCAGCATCTCCAACCACCCAACTTCATTCCGACAACTATTCTCCTCAGTCACACTCGTACTACGCACAAACACAAAACGAATACATCGCTTCGTCAATGCTTAGCTCAAGCAGTATCACAACAAACATTATCCATCCAGTGATCGGAATGTTTGGTGACACGATTTACGCAAGAACGTTTGGAAACACAACAACGAACCTGTACACTTATCCAAATTCATATGGTAATGTGAGCAACAGTAGTGTAAGACTGAGGAGGCACATAATGCAGGCTGATGAGTCACTGAGCAGAATCTGTTTTTCTTTTTTtGCTGCTTAG

Protein sequence

MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPTTQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLSRICFSFFAA*

Homology

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BLAST of Cucsa.119060 vs. Swiss-Prot
Match: RMA1_CAPAN (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-53
Identity = 111/247 (44.94%), Postives = 150/247 (60.73%), Query Frame = 1


Query: 1   MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           M  E L+ T  ++D  LG  K   D      + E+  S GFDCNICLD V +PV+TLCGH
Sbjct: 5   MALEQLDTTFNKHDTPLGKWKSMND------EVEENISGGFDCNICLDCVHEPVITLCGH 64

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGK-FQTTDASKAEAPP 120
           L+CWPCIYKW++ + +S++   Q + +CPVCKA+VS  TL+P+YG+  Q+T  S+ +A P
Sbjct: 65  LYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKA-P 124

Query: 121 NLGPAIPRRP----LGRHACEAETPASPTTQLHSDNYSPQSHSYYAQTQNEYIASSMLSS 180
           NLG  IP+RP     G H     T ++P+  L    Y  QS +     Q  Y++S MLS 
Sbjct: 125 NLGIVIPQRPPSPRCGGHFLLPTTDSNPSQLLQRRGYQQQSQTRQPAYQGSYMSSPMLSP 184

Query: 181 SSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLS 240
              T N++     M G+  YAR FGN++T +YTYPNSY    +SS R+RR + QAD SL 
Sbjct: 185 GGATANMLQH--SMIGEVAYARIFGNSSTTMYTYPNSYNLAISSSPRMRRQLSQADRSLG 242

Query: 241 RICFSFF 243
           RICF  F
Sbjct: 245 RICFFLF 242

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BLAST of Cucsa.119060 vs. Swiss-Prot
Match: RMA1_ARATH (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 8.8e-40
Identity = 87/210 (41.43%), Postives = 125/210 (59.52%), Query Frame = 1


Query: 33  AEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCK 92
           ++D     FDCNICLDSVQ+PVVTLCGHLFCWPCI+KWL  +  S     Q   +CPVCK
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCK 97

Query: 93  AKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPTTQLHSDNY 152
           +KVS +TLVP+YG+ + T   + +       ++P+RP+G      E P SP     +D  
Sbjct: 98  SKVSHSTLVPLYGRGRCTTQEEGK------NSVPKRPVG-PVYRLEMPNSPYAS--TDLR 157

Query: 153 SPQSHSYYAQTQNEYIASSMLSSSSIT-TNIIHPVIGMFGDTIYARTFGNTTTNLYTYPN 212
             Q   + +  +  Y  S ++SS+S++ + ++ PV+ M G+ +  R FG    + + YP+
Sbjct: 158 LSQRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPD 217

Query: 213 SYGNVSNSSVRLRRHIMQADESLSRICFSF 242
           +Y     S  R+RR IMQAD+SL RI F F
Sbjct: 218 TYNLAGTSGPRMRRRIMQADKSLGRIFFFF 238

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BLAST of Cucsa.119060 vs. Swiss-Prot
Match: RMA3_ARATH (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-32
Identity = 79/204 (38.73%), Postives = 111/204 (54.41%), Query Frame = 1


Query: 41  FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATL 100
           FDCNICLD+  DPVVTLCGHLFCWPCIYKWLH  +LS+    Q +  CPVCK+ ++  +L
Sbjct: 42  FDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHV-QLSSVSVDQHQNNCPVCKSNITITSL 101

Query: 101 VPIYGKFQTTDASK--AEAPPNLGPAIPRRPLGRHACEAETPASP-TTQLHSDNYSPQSH 160
           VP+YG+  ++ +S   ++    L   IPRRP         T AS     L     SP  H
Sbjct: 102 VPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQHQTLSPSFH 161

Query: 161 SYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVS 220
           ++    +      S   ++++  + ++PVIGMFGD +Y R FG T TN    P       
Sbjct: 162 NHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFG-TFTNTIAQPYQ----- 221

Query: 221 NSSVRLRRHIMQADESLSRICFSF 242
                  + +MQ ++SL+R+   F
Sbjct: 222 ------SQRMMQREKSLNRVSIFF 232

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BLAST of Cucsa.119060 vs. Swiss-Prot
Match: RMA2_ARATH (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-24
Identity = 55/105 (52.38%), Postives = 66/105 (62.86%), Query Frame = 1


Query: 41  FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVE-----CRCPVCKAKV 100
           FDCNICLD V+DPVVTLCGHLFCWPCI+KW +    S QR  Q +      +CPVCK+ V
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78

Query: 101 SRATLVPIYGKFQTTDASKAEAPPN-LGPAIPRRPLGRHACEAET 140
           S ATLVPIYG+ Q    S +  P    GP    R +G+   E E+
Sbjct: 79  SEATLVPIYGRGQKAPQSGSNVPSRPTGPVYDLRGVGQRLGEGES 123

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BLAST of Cucsa.119060 vs. Swiss-Prot
Match: RN185_PONAB (E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.2e-16
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = 1


Query: 14  DNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHC 73
           +NS  G      N    S  +D     F+CNICLD+ +D V++LCGHLFCWPC+++WL  
Sbjct: 13  ENSSAGGPSGSSNGAGESGGQDST---FECNICLDTAKDAVISLCGHLFCWPCLHQWLET 72

Query: 74  KKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPP 120
           +       +QV   CPVCKA +SR  ++P+YG+  T      E  P
Sbjct: 73  RP-----NRQV---CPVCKAGISRDKVIPLYGRGSTGQQDPREKTP 107

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BLAST of Cucsa.119060 vs. TrEMBL
Match: A0A0A0KB39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128040 PE=4 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 2.6e-139
Identity = 238/242 (98.35%), Postives = 240/242 (99.17%), Query Frame = 1


Query: 1   MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQEYLEETLMQNDNSLGGD+LCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120
           LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN
Sbjct: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120

Query: 121 LGPAIPRRPLGRHACEAETPASPTTQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180
           LGPAIPRRPLGRHACEAETPASPT QLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT
Sbjct: 121 LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180

Query: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLSRICFS 240
           NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNV+NSSVRLRRHIMQADESLSRICF 
Sbjct: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFF 240

Query: 241 FF 243
           FF
Sbjct: 241 FF 242

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BLAST of Cucsa.119060 vs. TrEMBL
Match: A0A067JX84_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25796 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 8.8e-63
Identity = 129/250 (51.60%), Postives = 172/250 (68.80%), Query Frame = 1


Query: 3   QEYLEETLMQNDNSLGGD-KLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGHL 62
           Q Y+EE++ +ND+    + K   DN   I+D+ED  S GF+CNICLDSVQ+PVVTLCGHL
Sbjct: 4   QHYIEESIEENDHMREDNWKSTSDN---IADSEDSTSSGFECNICLDSVQEPVVTLCGHL 63

Query: 63  FCWPCIYKWLHCKKLSAQRCQ-QVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 122
           +CWPCIYKWLH + +SA+    + + +CPVCKA+VS  TLVP++G+ QT   SK++A PN
Sbjct: 64  YCWPCIYKWLHFQSISAENEDLEPQQQCPVCKAEVSEGTLVPLFGRGQTAKPSKSKA-PN 123

Query: 123 LGPAIPRRPLGRHACEAETPAS--------PTTQLHSDNYSPQSHSYYAQTQNEYIASSM 182
           LG  IPRRPLG  AC  ++P S        PT Q ++ NY+  S  YY++    Y  S M
Sbjct: 124 LGIIIPRRPLGL-ACGFDSPRSPFMTSSPQPTQQTYNRNYTNHSQVYYSR-PGGYSPSPM 183

Query: 183 LSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADE 242
           ++      N+  PVIGMFG+ IYAR FGN+ TN+Y+YP+SY    ++S R+RRH+MQAD+
Sbjct: 184 INPRVTAANMFDPVIGMFGEMIYARVFGNSVTNIYSYPDSYNLAGSTSPRVRRHVMQADK 243

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BLAST of Cucsa.119060 vs. TrEMBL
Match: W9STC6_9ROSA (E3 ubiquitin-protein ligase OS=Morus notabilis GN=L484_009813 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-60
Identity = 121/241 (50.21%), Postives = 159/241 (65.98%), Query Frame = 1


Query: 4   EYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFC 63
           +Y EE + QN++       C   + +  D ++  S GFDCNICLD+V DPVVTLCGHLFC
Sbjct: 5   QYFEEAMPQNNSMEETKSSCQKWKSFSKDGDNNPSTGFDCNICLDTVHDPVVTLCGHLFC 64

Query: 64  WPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGP 123
           WPCIYKWLH +    ++ QQ   +CPVCKA+VS+A+LVP+YG+ QTT  SK +AP NLG 
Sbjct: 65  WPCIYKWLHFQSTQEEQQQQ---QCPVCKAEVSQASLVPLYGRGQTTKPSKGKAP-NLGI 124

Query: 124 AIPRRPLGRHACEAETPASPTTQLHSDNYS--PQSHSYYAQTQNEYIASSMLSSSSITTN 183
            IP+RPLG      ++P+  T+   S  +   P      +  +  +  S MLS S + TN
Sbjct: 125 VIPKRPLGPFY-GVDSPSVLTSPHMSQQFYRYPHQSQLNSSRRGSHAPSPMLSPSGVATN 184

Query: 184 IIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLSRICFSF 243
           +  P IG+FG+ IYAR FGN+ TNLYTYPNSY  V N+S R+RRH+MQAD+SL R+CF  
Sbjct: 185 LFDPTIGIFGEMIYARVFGNSITNLYTYPNSYNLVGNASPRVRRHVMQADKSLGRVCFFL 240

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BLAST of Cucsa.119060 vs. TrEMBL
Match: U5FVY0_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0013s13580g PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.4e-60
Identity = 130/253 (51.38%), Postives = 171/253 (67.59%), Query Frame = 1


Query: 4   EYLEETLMQNDNSLGGDKLCLDNQIYIS----DAEDEASHGFDCNICLDSVQDPVVTLCG 63
           +Y+EET+ QND +   DK  L N   +S    D++D  S GFDCNICLDSV DPVVTLCG
Sbjct: 5   QYMEETMAQNDYNRE-DKPSLPNWKSVSETVIDSDDSRSSGFDCNICLDSVHDPVVTLCG 64

Query: 64  HLFCWPCIYKWLHCKKLSAQ-RCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAP 123
           HL+CWPCIYKWLH + +SA+ + Q  + +CPVCKA+VS++T+VP++G+ QTT   K +A 
Sbjct: 65  HLYCWPCIYKWLHFQSISAENQDQHPQQQCPVCKAEVSQSTIVPLFGRGQTTKPCKGKA- 124

Query: 124 PNLGPAIPRRPLGRHACEAETPASP--------TTQL-HSDNYSPQSHSYYAQTQNEYIA 183
           PNLG  IPRRP GR AC  ++P SP        T Q+ H  NY  QS  YY+Q ++    
Sbjct: 125 PNLGIIIPRRPPGR-ACGFDSPRSPIATSSPRVTPQIHHRHNYPHQSQHYYSQPRSN-ST 184

Query: 184 SSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQ 243
           S M S    T N+    +GMFG+ +Y+R FGN+ TN+++YPNSY    ++S R+RRH+MQ
Sbjct: 185 SPMRSPGGSTLNMPALEVGMFGEMMYSRVFGNSITNIHSYPNSYHLAGSASPRVRRHVMQ 244

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BLAST of Cucsa.119060 vs. TrEMBL
Match: B9N2C6_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s13210g PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.5e-59
Identity = 127/253 (50.20%), Postives = 167/253 (66.01%), Query Frame = 1


Query: 3   QEYLEETLMQNDNSLGGDKLCLDNQIYIS---DAEDEASHGFDCNICLDSVQDPVVTLCG 62
           ++YLEET+ QND +       L  +       D+++  S+GFDCNICLDSVQDPVVTLCG
Sbjct: 4   EQYLEETVAQNDYNREYKPSLLKWKPIPKTAIDSDESPSNGFDCNICLDSVQDPVVTLCG 63

Query: 63  HLFCWPCIYKWLHCKKLSAQ-RCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAP 122
           HL+CWPCIYKWLH + +SA+ + QQ + +CPVCKA+VS++T+VP++G+ QTT  S  +AP
Sbjct: 64  HLYCWPCIYKWLHSQSISAENQDQQPQQQCPVCKAEVSQSTIVPLFGRGQTTKPSMRKAP 123

Query: 123 PNLGPAIPRRPLGRHACEAETPASPTTQ---------LHSDNYSPQSHSYYAQTQNEYIA 182
            N+G  IP RP G  AC  ++P +P             H  NY  QS  +Y+Q    Y A
Sbjct: 124 -NVGIIIPHRPPGL-ACGFDSPRTPIATGSPRPVQQIHHRHNYPHQSQLHYSQP-GSYSA 183

Query: 183 SSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQ 242
           S M S    T N+  PV+GMFG+ IYAR FGN+ TN+ +YPNSY    ++S R+RRH+MQ
Sbjct: 184 SPMHSPRGTTINMADPVVGMFGEMIYARVFGNSITNMPSYPNSYHLAGSASPRVRRHVMQ 243

[Close]

BLAST of Cucsa.119060 vs. TAIR10
Match: AT4G03510.1 (AT4G03510.1 RING membrane-anchor 1)

HSP 1 Score: 165.2 bits (417), Expect = 4.9e-41
Identity = 87/210 (41.43%), Postives = 125/210 (59.52%), Query Frame = 1


Query: 33  AEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCK 92
           ++D     FDCNICLDSVQ+PVVTLCGHLFCWPCI+KWL  +  S     Q   +CPVCK
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCK 97

Query: 93  AKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPTTQLHSDNY 152
           +KVS +TLVP+YG+ + T   + +       ++P+RP+G      E P SP     +D  
Sbjct: 98  SKVSHSTLVPLYGRGRCTTQEEGK------NSVPKRPVG-PVYRLEMPNSPYAS--TDLR 157

Query: 153 SPQSHSYYAQTQNEYIASSMLSSSSIT-TNIIHPVIGMFGDTIYARTFGNTTTNLYTYPN 212
             Q   + +  +  Y  S ++SS+S++ + ++ PV+ M G+ +  R FG    + + YP+
Sbjct: 158 LSQRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPD 217

Query: 213 SYGNVSNSSVRLRRHIMQADESLSRICFSF 242
           +Y     S  R+RR IMQAD+SL RI F F
Sbjct: 218 TYNLAGTSGPRMRRRIMQADKSLGRIFFFF 238

[Close]

BLAST of Cucsa.119060 vs. TAIR10
Match: AT4G27470.1 (AT4G27470.1 RING membrane-anchor 3)

HSP 1 Score: 141.0 bits (354), Expect = 1.0e-33
Identity = 79/204 (38.73%), Postives = 111/204 (54.41%), Query Frame = 1


Query: 41  FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATL 100
           FDCNICLD+  DPVVTLCGHLFCWPCIYKWLH  +LS+    Q +  CPVCK+ ++  +L
Sbjct: 42  FDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHV-QLSSVSVDQHQNNCPVCKSNITITSL 101

Query: 101 VPIYGKFQTTDASK--AEAPPNLGPAIPRRPLGRHACEAETPASP-TTQLHSDNYSPQSH 160
           VP+YG+  ++ +S   ++    L   IPRRP         T AS     L     SP  H
Sbjct: 102 VPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQHQTLSPSFH 161

Query: 161 SYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVS 220
           ++    +      S   ++++  + ++PVIGMFGD +Y R FG T TN    P       
Sbjct: 162 NHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFG-TFTNTIAQPYQ----- 221

Query: 221 NSSVRLRRHIMQADESLSRICFSF 242
                  + +MQ ++SL+R+   F
Sbjct: 222 ------SQRMMQREKSLNRVSIFF 232

[Close]

BLAST of Cucsa.119060 vs. TAIR10
Match: AT4G28270.1 (AT4G28270.1 RING membrane-anchor 2)

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-25
Identity = 55/105 (52.38%), Postives = 66/105 (62.86%), Query Frame = 1


Query: 41  FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVE-----CRCPVCKAKV 100
           FDCNICLD V+DPVVTLCGHLFCWPCI+KW +    S QR  Q +      +CPVCK+ V
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78

Query: 101 SRATLVPIYGKFQTTDASKAEAPPN-LGPAIPRRPLGRHACEAET 140
           S ATLVPIYG+ Q    S +  P    GP    R +G+   E E+
Sbjct: 79  SEATLVPIYGRGQKAPQSGSNVPSRPTGPVYDLRGVGQRLGEGES 123

[Close]

BLAST of Cucsa.119060 vs. TAIR10
Match: AT1G74990.1 (AT1G74990.1 RING/U-box superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 7.2e-24
Identity = 56/132 (42.42%), Postives = 74/132 (56.06%), Query Frame = 1


Query: 30  ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCP 89
           I++ ED+AS+ F CNICL+  ++P+VTLCGHLFCWPC+YKWLH    S          CP
Sbjct: 6   ITNEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSN--------HCP 65

Query: 90  VCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPTTQLHS 149
           VCKA V   TLVP+YG  + +   +++   N G  +P RP    A   ET      Q H 
Sbjct: 66  VCKALVKEDTLVPLYGMGKPSSDPRSKL--NSGVTVPNRPA---ATRTETARPRLEQRHH 124

Query: 150 DNYSPQSHSYYA 162
            +     HS +A
Sbjct: 126 GSSFFGGHSSFA 124

[Close]

BLAST of Cucsa.119060 vs. TAIR10
Match: AT1G19310.1 (AT1G19310.1 RING/U-box superfamily protein)

HSP 1 Score: 107.8 bits (268), Expect = 9.4e-24
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 1


Query: 31  SDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPV 90
           +D  +  S  F+CNICLD  QDP+VTLCGHLFCWPC+YKWLH    S          CPV
Sbjct: 11  NDTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKD--------CPV 70

Query: 91  CKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETP 141
           CKA +    LVP+YG+ +++   ++++ P L   +P RP G+    A+ P
Sbjct: 71  CKAVIEEDRLVPLYGRGKSSADPRSKSIPGL--EVPNRPSGQRPETAQPP 110

[Close]

BLAST of Cucsa.119060 vs. NCBI nr
Match: gi|449444358|ref|XP_004139942.1| (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus])

HSP 1 Score: 502.7 bits (1293), Expect = 3.7e-139
Identity = 238/242 (98.35%), Postives = 240/242 (99.17%), Query Frame = 1


Query: 1   MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQEYLEETLMQNDNSLGGD+LCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120
           LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN
Sbjct: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120

Query: 121 LGPAIPRRPLGRHACEAETPASPTTQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180
           LGPAIPRRPLGRHACEAETPASPT QLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT
Sbjct: 121 LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180

Query: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLSRICFS 240
           NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNV+NSSVRLRRHIMQADESLSRICF 
Sbjct: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFF 240

Query: 241 FF 243
           FF
Sbjct: 241 FF 242

[Close]

BLAST of Cucsa.119060 vs. NCBI nr
Match: gi|659094879|ref|XP_008448288.1| (PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo])

HSP 1 Score: 468.4 bits (1204), Expect = 7.7e-129
Identity = 223/242 (92.15%), Postives = 230/242 (95.04%), Query Frame = 1


Query: 1   MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQ+YLEE LM NDNSLGGDKL LD Q YISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120
           LFCWPCIYKWLH KKLSAQ+CQQVECRCPVCKAKVSRATL+PIYGKFQTTDASKA+APPN
Sbjct: 61  LFCWPCIYKWLHSKKLSAQQCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPPN 120

Query: 121 LGPAIPRRPLGRHACEAETPASPTTQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180
           LGPAIPRRPLG HACEAETPASPT QLHS NYSPQSHSYY+QTQNEYI+SSMLSSSSITT
Sbjct: 121 LGPAIPRRPLGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEYISSSMLSSSSITT 180

Query: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLSRICFS 240
           NIIHPVIGMFGDTIY RT GNTTTNLY+YPNSYGNVSNSSVRLRRHIMQADESLSRICF 
Sbjct: 181 NIIHPVIGMFGDTIYPRTLGNTTTNLYSYPNSYGNVSNSSVRLRRHIMQADESLSRICFF 240

Query: 241 FF 243
           FF
Sbjct: 241 FF 242

[Close]

BLAST of Cucsa.119060 vs. NCBI nr
Match: gi|802752613|ref|XP_012088296.1| (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas])

HSP 1 Score: 248.4 bits (633), Expect = 1.3e-62
Identity = 129/250 (51.60%), Postives = 172/250 (68.80%), Query Frame = 1


Query: 3   QEYLEETLMQNDNSLGGD-KLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGHL 62
           Q Y+EE++ +ND+    + K   DN   I+D+ED  S GF+CNICLDSVQ+PVVTLCGHL
Sbjct: 4   QHYIEESIEENDHMREDNWKSTSDN---IADSEDSTSSGFECNICLDSVQEPVVTLCGHL 63

Query: 63  FCWPCIYKWLHCKKLSAQRCQ-QVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 122
           +CWPCIYKWLH + +SA+    + + +CPVCKA+VS  TLVP++G+ QT   SK++A PN
Sbjct: 64  YCWPCIYKWLHFQSISAENEDLEPQQQCPVCKAEVSEGTLVPLFGRGQTAKPSKSKA-PN 123

Query: 123 LGPAIPRRPLGRHACEAETPAS--------PTTQLHSDNYSPQSHSYYAQTQNEYIASSM 182
           LG  IPRRPLG  AC  ++P S        PT Q ++ NY+  S  YY++    Y  S M
Sbjct: 124 LGIIIPRRPLGL-ACGFDSPRSPFMTSSPQPTQQTYNRNYTNHSQVYYSR-PGGYSPSPM 183

Query: 183 LSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADE 242
           ++      N+  PVIGMFG+ IYAR FGN+ TN+Y+YP+SY    ++S R+RRH+MQAD+
Sbjct: 184 INPRVTAANMFDPVIGMFGEMIYARVFGNSVTNIYSYPDSYNLAGSTSPRVRRHVMQADK 243

[Close]

BLAST of Cucsa.119060 vs. NCBI nr
Match: gi|1009128748|ref|XP_015881403.1| (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Ziziphus jujuba])

HSP 1 Score: 246.9 bits (629), Expect = 3.7e-62
Identity = 125/214 (58.41%), Postives = 154/214 (71.96%), Query Frame = 1


Query: 30  ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCP 89
           ++D +++++ GF+CNICLD+V DPVVTLCGHLFCWPCIYKWLH +  S++   Q   +CP
Sbjct: 34  VADFDNDSAGGFECNICLDTVHDPVVTLCGHLFCWPCIYKWLHFQSASSETEDQTPQQCP 93

Query: 90  VCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPTT-QLH 149
           VCKA+VS+A+LVP+YG+ QTT  SK +A PNLG  IPRRPLG   C  ++P+  TT QL+
Sbjct: 94  VCKAEVSQASLVPLYGRGQTTKPSKGKA-PNLGIVIPRRPLG-PICGFDSPSQHTTQQLY 153

Query: 150 SDNYSPQSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYT 209
             NY  QS   Y  +Q  Y AS MLS    TTNI  P IGM G+ IYAR FGN+ TNLYT
Sbjct: 154 YQNYPNQSQLNY--SQRGYSASPMLSPGGSTTNIFDPTIGMLGEMIYARVFGNSMTNLYT 213

Query: 210 YPNSYGNVSNSSVRLRRHIMQADESLSRICFSFF 243
           YPNSY    +SS R+RRH+MQAD SLSRI F  F
Sbjct: 214 YPNSYHLAGSSSPRVRRHVMQADRSLSRITFFLF 243

[Close]

BLAST of Cucsa.119060 vs. NCBI nr
Match: gi|703151773|ref|XP_010110208.1| (E3 ubiquitin-protein ligase [Morus notabilis])

HSP 1 Score: 241.5 bits (615), Expect = 1.5e-60
Identity = 121/241 (50.21%), Postives = 159/241 (65.98%), Query Frame = 1


Query: 4   EYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFC 63
           +Y EE + QN++       C   + +  D ++  S GFDCNICLD+V DPVVTLCGHLFC
Sbjct: 5   QYFEEAMPQNNSMEETKSSCQKWKSFSKDGDNNPSTGFDCNICLDTVHDPVVTLCGHLFC 64

Query: 64  WPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGP 123
           WPCIYKWLH +    ++ QQ   +CPVCKA+VS+A+LVP+YG+ QTT  SK +AP NLG 
Sbjct: 65  WPCIYKWLHFQSTQEEQQQQ---QCPVCKAEVSQASLVPLYGRGQTTKPSKGKAP-NLGI 124

Query: 124 AIPRRPLGRHACEAETPASPTTQLHSDNYS--PQSHSYYAQTQNEYIASSMLSSSSITTN 183
            IP+RPLG      ++P+  T+   S  +   P      +  +  +  S MLS S + TN
Sbjct: 125 VIPKRPLGPFY-GVDSPSVLTSPHMSQQFYRYPHQSQLNSSRRGSHAPSPMLSPSGVATN 184

Query: 184 IIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLSRICFSF 243
           +  P IG+FG+ IYAR FGN+ TNLYTYPNSY  V N+S R+RRH+MQAD+SL R+CF  
Sbjct: 185 LFDPTIGIFGEMIYARVFGNSITNLYTYPNSYNLVGNASPRVRRHVMQADKSLGRVCFFL 240

The following BLAST results are available for this feature:

BLAST of Cucsa.119060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RMA1_CAPAN	1.8e-53	44.94	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1	[more]
RMA1_ARATH	8.8e-40	41.43	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1 PE=1 SV=1	[more]
RMA3_ARATH	1.8e-32	38.73	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1	[more]
RMA2_ARATH	4.0e-24	52.38	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2 PE=1 SV=1	[more]
RN185_PONAB	5.2e-16	40.57	E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2 SV=1	[more]

BLAST of Cucsa.119060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB39_CUCSA	2.6e-139	98.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128040 PE=4 SV=1	[more]
A0A067JX84_JATCU	8.8e-63	51.60	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25796 PE=4 SV=1	[more]
W9STC6_9ROSA	1.1e-60	50.21	E3 ubiquitin-protein ligase OS=Morus notabilis GN=L484_009813 PE=4 SV=1	[more]
U5FVY0_POPTR	1.4e-60	51.38	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0013s13580g PE=4 SV=1	[more]
B9N2C6_POPTR	1.5e-59	50.20	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s13210g PE=4 SV=1	[more]

BLAST of Cucsa.119060 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03510.1	4.9e-41	41.43	RING membrane-anchor 1	[more]
AT4G27470.1	1.0e-33	38.73	RING membrane-anchor 3	[more]
AT4G28270.1	2.2e-25	52.38	RING membrane-anchor 2	[more]
AT1G74990.1	7.2e-24	42.42	RING/U-box superfamily protein	[more]
AT1G19310.1	9.4e-24	44.55	RING/U-box superfamily protein	[more]

BLAST of Cucsa.119060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444358\|ref\|XP_004139942.1\|	3.7e-139	98.35	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus]	[more]
gi\|659094879\|ref\|XP_008448288.1\|	7.7e-129	92.15	PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo]	[more]
gi\|802752613\|ref\|XP_012088296.1\|	1.3e-62	51.60	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]	[more]
gi\|1009128748\|ref\|XP_015881403.1\|	3.7e-62	58.41	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Ziziphus jujuba]	[more]
gi\|703151773\|ref\|XP_010110208.1\|	1.5e-60	50.21	E3 ubiquitin-protein ligase [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR027370	Znf-RING_LisH
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR027370	Znf-RING_LisH

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.119060.1	Cucsa.119060.1	mRNA
Cucsa.119060.2	Cucsa.119060.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 43..91 score: 4.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 43..92 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 32..104 score: 3.0
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 58..67 scor
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 43..89 score: 3.
None	No IPR available	PANTHER	PTHR12313	RNF5	coord: 30..239 score: 3.7
None	No IPR available	PANTHER	PTHR12313:SF5	SUBFAMILY NOT NAMED	coord: 30..239 score: 3.7
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 36..105 score: 2.59

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.119060	Cla013565	Watermelon (97103) v1	cgywmB183
Cucsa.119060	Csa6G128040	Cucumber (Chinese Long) v2	cgycuB155
Cucsa.119060	Csa7G047460	Cucumber (Chinese Long) v2	cgycuB158
Cucsa.119060	MELO3C018740	Melon (DHL92) v3.5.1	cgymeB184
Cucsa.119060	ClCG02G017600	Watermelon (Charleston Gray)	cgywcgB181
Cucsa.119060	CSPI07G04590	Wild cucumber (PI 183967)	cgycpiB159
Cucsa.119060	CSPI06G10480	Wild cucumber (PI 183967)	cgycpiB156
Cucsa.119060	CmaCh11G018740	Cucurbita maxima (Rimu)	cgycmaB0293
Cucsa.119060	CmaCh20G001960	Cucurbita maxima (Rimu)	cgycmaB0301
Cucsa.119060	CmoCh20G002150	Cucurbita moschata (Rifu)	cgycmoB0299
Cucsa.119060	CmoCh11G019510	Cucurbita moschata (Rifu)	cgycmoB0291
Cucsa.119060	Lsi10G008930	Bottle gourd (USVL1VR-Ls)	cgylsiB173
Cucsa.119060	Lsi11G015480	Bottle gourd (USVL1VR-Ls)	cgylsiB179
Cucsa.119060	Cp4.1LG16g07810	Cucurbita pepo (Zucchini)	cgycpeB0294
Cucsa.119060	MELO3C018740.2	Melon (DHL92) v3.6.1	cgymedB181
Cucsa.119060	CsaV3_6G012970	Cucumber (Chinese Long) v3	cgycucB159
Cucsa.119060	Cla97C02G043360	Watermelon (97103) v2	cgywmbB176
Cucsa.119060	Bhi10G000869	Wax gourd	cgywgoB214
Cucsa.119060	Bhi05G001615	Wax gourd	cgywgoB207
Cucsa.119060	Carg18451	Silver-seed gourd	carcgyB0479
Cucsa.119060	Carg19119	Silver-seed gourd	carcgyB0808

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cucsa.119060	Cucsa.147700	Cucumber (Gy14) v1	cgycgyB070

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.119060	Cucurbita pepo (Zucchini)	cgycpeB0300
Cucsa.119060	Melon (DHL92) v3.6.1	cgymedB175
Cucsa.119060	Silver-seed gourd	carcgyB0030
Cucsa.119060	Cucumber (Chinese Long) v3	cgycucB162
Cucsa.119060	Cucurbita maxima (Rimu)	cgycmaB0309
Cucsa.119060	Cucurbita moschata (Rifu)	cgycmoB0307
Cucsa.119060	Melon (DHL92) v3.5.1	cgymeB177