Carg18451 (gene) Silver-seed gourd

Overview
NameCarg18451
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionE3 ubiquitin-protein ligase RMA1H1
LocationCucurbita_argyrosperma_scaffold_161 : 311820 .. 312488 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCAGCTGTACCTTGTTCCAGATGCTGATGAAGGAGTATCCCATGGCTTTGAATGCAACATATGCCTAGACTCAGTTCAAGATCCTGTTGTAACACTTTGTGGCCATCTCTTCTGTTGGCCCTGCATTTACAAATGGATCCAGTACAAGAGCTTGTCCTCACAGCAACAATGCCAGCAAGAGGAATGTCGATGTCCCGTTTGCAAGGCCGAGGTCTCCCACGCTACGCTCGTCCCACTTTACGGAAAATTTCAGACTACACCTCCCTCCAAAACTAAACCACCATCAAATCTTGGTCCAGCCATCCCACGCCGGCCTCTTGGTCCTGCCTGTGGGGGAGAGCCACCAGCATCTCCAAGCGCTCAACTTCATCATCATCACAACTATTCTCAGTCACACGACGATTACATCGCTTCATCGATGCTTAGCTCGAGCAGTATTACAACGAACATTATCCACCCAGTGATCGGGATGTTCGGTGACGCAGTTTACACAAGAACGTTTGGAAACACGACGACAAACCTTTATACTTATCCTAATTCATATGGTCATGTAAGCAATAGTAGTGTAAGGCTGAGGAGGCACATAATGCAGGCTGATGAGTCGCTGAGCAGAATCTGTTTCTTCCTGTTTTGTTGCTTAGTGTTGTGTCTTTTATTATTCTAA

mRNA sequence

ATGGAGCAGCTGTACCTTGTTCCAGATGCTGATGAAGGAGTATCCCATGGCTTTGAATGCAACATATGCCTAGACTCAGTTCAAGATCCTGTTGTAACACTTTGTGGCCATCTCTTCTGTTGGCCCTGCATTTACAAATGGATCCAGTACAAGAGCTTGTCCTCACAGCAACAATGCCAGCAAGAGGAATGTCGATGTCCCGTTTGCAAGGCCGAGGTCTCCCACGCTACGCTCGTCCCACTTTACGGAAAATTTCAGACTACACCTCCCTCCAAAACTAAACCACCATCAAATCTTGGTCCAGCCATCCCACGCCGGCCTCTTGGTCCTGCCTGTGGGGGAGAGCCACCAGCATCTCCAAGCGCTCAACTTCATCATCATCACAACTATTCTCAGTCACACGACGATTACATCGCTTCATCGATGCTTAGCTCGAGCAGTATTACAACGAACATTATCCACCCAGTGATCGGGATGTTCGGTGACGCAGTTTACACAAGAACGTTTGGAAACACGACGACAAACCTTTATACTTATCCTAATTCATATGGTCATGTAAGCAATAGTAGTGTAAGGCTGAGGAGGCACATAATGCAGGCTGATGAGTCGCTGAGCAGAATCTGTTTCTTCCTGTTTTGTTGCTTAGTGTTGTGTCTTTTATTATTCTAA

Coding sequence (CDS)

ATGGAGCAGCTGTACCTTGTTCCAGATGCTGATGAAGGAGTATCCCATGGCTTTGAATGCAACATATGCCTAGACTCAGTTCAAGATCCTGTTGTAACACTTTGTGGCCATCTCTTCTGTTGGCCCTGCATTTACAAATGGATCCAGTACAAGAGCTTGTCCTCACAGCAACAATGCCAGCAAGAGGAATGTCGATGTCCCGTTTGCAAGGCCGAGGTCTCCCACGCTACGCTCGTCCCACTTTACGGAAAATTTCAGACTACACCTCCCTCCAAAACTAAACCACCATCAAATCTTGGTCCAGCCATCCCACGCCGGCCTCTTGGTCCTGCCTGTGGGGGAGAGCCACCAGCATCTCCAAGCGCTCAACTTCATCATCATCACAACTATTCTCAGTCACACGACGATTACATCGCTTCATCGATGCTTAGCTCGAGCAGTATTACAACGAACATTATCCACCCAGTGATCGGGATGTTCGGTGACGCAGTTTACACAAGAACGTTTGGAAACACGACGACAAACCTTTATACTTATCCTAATTCATATGGTCATGTAAGCAATAGTAGTGTAAGGCTGAGGAGGCACATAATGCAGGCTGATGAGTCGCTGAGCAGAATCTGTTTCTTCCTGTTTTGTTGCTTAGTGTTGTGTCTTTTATTATTCTAA

Protein sequence

MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQLHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF
Homology
[Close]
BLAST of Carg18451 vs. NCBI nr
Match: XP_023513341.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.3 bits (856), Expect = 3.1e-88
Identity = 182/222 (81.98%), Postives = 182/222 (81.98%), Query Frame = 0 

Query: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXX 60
           MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWI YKSLSSQQ  X
Sbjct: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCX 60

Query: 61  XXXXXXXXXXXXXSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPXXXX 120
           XXXXXXXXXXX  SHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACG EP    
Sbjct: 61  XXXXXXXXXXXEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEP-PAS 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180
                                         NIIHPVIGMFGDAVYTRTFGNTTTNLYTYP
Sbjct: 121 PSAQLHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180

Query: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF
Sbjct: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 221

[Close]
BLAST of Carg18451 vs. NCBI nr
Match: XP_022943375.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022943376.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata])

HSP 1 Score: 333.6 bits (854), Expect = 5.2e-88
Identity = 202/222 (90.99%), Postives = 204/222 (91.89%), Query Frame = 0 

Query: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXX 60
           MEQLYLVP+ADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWI YKSLSSQQ  X
Sbjct: 1   MEQLYLVPEADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCX 60

Query: 61  XXXXXXXXXXXXXSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPXXXX 120
           XXXXXXXXXXX  SHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEP    
Sbjct: 61  XXXXXXXXXXXEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEP-PAS 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180
                 XXXXXXXXXXXXXXXXXXXXX   NIIHPVIGMFGDAVYTRTFGNTT+NLYTYP
Sbjct: 121 PSAQLHXXXXXXXXXXXXXXXXXXXXXITTNIIHPVIGMFGDAVYTRTFGNTTSNLYTYP 180

Query: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF
Sbjct: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 221

[Close]
BLAST of Carg18451 vs. NCBI nr
Match: XP_022986029.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022986030.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022986031.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima])

HSP 1 Score: 323.2 bits (827), Expect = 7.1e-85
Identity = 177/220 (80.45%), Postives = 177/220 (80.45%), Query Frame = 0 

Query: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXX 60
           MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWI YKSLSSQQ  X
Sbjct: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCX 60

Query: 61  XXXXXXXXXXXXXSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPXXXX 120
           XXXXXXXXXXX  SHATLVPLYGKFQTT PSKTKPPSNLGPAIPRRPLGPACG EP    
Sbjct: 61  XXXXXXXXXXXEVSHATLVPLYGKFQTTAPSKTKPPSNLGPAIPRRPLGPACGAEP-PAS 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180
                                         NIIHPVIGMFGDAVYTRTFGNTTTNLYTYP
Sbjct: 121 PSSQLHHHNYSQSHNDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180

Query: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLL 221
           NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLV  LL
Sbjct: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVFLLL 219

[Close]
BLAST of Carg18451 vs. NCBI nr
Match: XP_022140292.1 (E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022140293.1 E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia])

HSP 1 Score: 262.3 bits (669), Expect = 1.5e-66
Identity = 136/225 (60.44%), Postives = 149/225 (66.22%), Query Frame = 0 

Query: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXXXXXXXX 66
           V DAD G SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+ YK+LS+QQ         
Sbjct: 29  VSDADGGASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHYKNLSAQQQCQPQENCC 88

Query: 67  XXXXXXXSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGG---------EPX 126
                  SHA+LVPLYG+FQTT PS+TK  S LGPAIPRRPLGPACG          +  
Sbjct: 89  PVCKAEVSHASLVPLYGRFQTTNPSETK-ASQLGPAIPRRPLGPACGAAEAPASPSPQLH 148

Query: 127 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIIHPVIGMFGDAVYTRTFGNTTTNLY 186
                                            NIIHPVIG FG+A+Y R FGNTTT+L+
Sbjct: 149 PHNYYLPHAHSYHPRTTQDYITSSMLGSSSITTNIIHPVIGTFGEAIYARAFGNTTTSLH 208

Query: 187 TYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           TYPNSYGHVSNSS RLRRH+MQADESLSRICFF FCCLVLC L F
Sbjct: 209 TYPNSYGHVSNSSARLRRHMMQADESLSRICFFFFCCLVLCFLSF 252

[Close]
BLAST of Carg18451 vs. NCBI nr
Match: XP_004139942.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >KGN46743.1 hypothetical protein Csa_6G128040 [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 1.9e-58
Identity = 129/228 (56.58%), Postives = 142/228 (62.28%), Query Frame = 0 

Query: 3   QLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXXXX 62
           Q+Y + DA++  SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+  K LS+Q+     
Sbjct: 27  QIY-ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQR-CQQV 86

Query: 63  XXXXXXXXXXXSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLG--------PACGG 122
                      S ATLVP+YGKFQTT  SK + P NLGPAIPRRPLG        PA   
Sbjct: 87  ECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPT 146

Query: 123 EPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIIHPVIGMFGDAVYTRTFGNTTT 182
                                               NIIHPVIGMFGD +Y RTFGNTTT
Sbjct: 147 PQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTT 206

Query: 183 NLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           NLYTYPNSYG+V+NSSVRLRRHIMQADESLSRICF        CLLLF
Sbjct: 207 NLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFXXXXXXXXCLLLF 252

[Close]
BLAST of Carg18451 vs. TAIR10
Match: AT4G03510.1 (RING membrane-anchor 1)

HSP 1 Score: 124.8 bits (312), Expect = 6.7e-29
Identity = 73/204 (35.78%), Postives = 99/204 (48.53%), Query Frame = 0 

Query: 10  ADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXXXXXXXXXXX 69
           +D+     F+CNICLDSVQ+PVVTLCGHLFCWPCI+KW+  +S S+              
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSD-EYQRHRQCPVC 97

Query: 70  XXXXSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPXXXXXXXXXXXXX 129
               SH+TLVPLYG+ + T   + K       ++P+RP+GP    E              
Sbjct: 98  KSKVSHSTLVPLYGRGRCTTQEEGK------NSVPKRPVGPVYRLEMPNSPYASTDLRLS 157

Query: 130 XXXXXXXXXXXXXXXXXXXXXN------IIHPVIGMFGDAVYTRTFGNTTTNLYTYPNSY 189
                                N      ++ PV+ M G+ V TR FG    + + YP++Y
Sbjct: 158 QRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTY 217

Query: 190 GHVSNSSVRLRRHIMQADESLSRI 208
                S  R+RR IMQAD+SL RI
Sbjct: 218 NLAGTSGPRMRRRIMQADKSLGRI 234

[Close]
BLAST of Carg18451 vs. TAIR10
Match: AT4G27470.1 (RING membrane-anchor 3)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-25
Identity = 84/234 (35.90%), Postives = 107/234 (45.73%), Query Frame = 0 

Query: 4   LYLVPDADEGVSHG-FECNICLDSVQDPVVTLCGHLFCWPCIYKW--IQYKSLSSQQXXX 63
           L   P A +    G F+CNICLD+  DPVVTLCGHLFCWPCIYKW  +Q  S+S  Q   
Sbjct: 27  LTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQ--- 86

Query: 64  XXXXXXXXXXXXXSHATLVPLYGKFQTTPPSK--TKPPSNLGPAIPRRPLGPACGGEP-- 123
                        +  +LVPLYG+  ++P S   +K    L   IPRRP  P+    P  
Sbjct: 87  -HQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP-APSALRNPIT 146

Query: 124 --------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIIHPVIGMFGDAVYTRT 183
                          X                          + ++PVIGMFGD VYTR 
Sbjct: 147 SASSLNPSLQHQTLSXSFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRI 206

Query: 184 FGNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           FG T TN    P              + +MQ ++SL+R+  F  CC++LCLLLF
Sbjct: 207 FG-TFTNTIAQPYQ-----------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]
BLAST of Carg18451 vs. TAIR10
Match: AT4G28270.1 (RING membrane-anchor 2)

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-25
Identity = 79/212 (37.26%), Postives = 102/212 (48.11%), Query Frame = 0 

Query: 18  FECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQ-----XXXXXXXXXXXXXXX 77
           F+CNICLD V+DPVVTLCGHLFCWPCI+KW  Y S +S+Q                    
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKW-TYASNNSRQRVDQYDHKREPPKCPVCKSD 78

Query: 78  XSHATLVPLYGKFQTTPPSKTKPPSN-LGPAIPRRPLGPACG-GEPXXXXXXXXXXXXXX 137
            S ATLVP+YG+ Q  P S +  PS   GP    R +G   G GE               
Sbjct: 79  VSEATLVPIYGRGQKAPQSGSNVPSRPTGPVYDLRGVGQRLGEGE--------------- 138

Query: 138 XXXXXXXXXXXXXXXXXXXXNIIHPVIGMFGDAVYTRTFGNTTTNLYTYPNSYGHVSNSS 197
                                +  PV+G+  + VY R FG +++N+  Y        + +
Sbjct: 139 --------------SQRYMYRMPDPVMGVVCEMVYRRLFGESSSNMAPY-------RDMN 193

Query: 198 VRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           VR RR  MQA+ESLSR+  FL C + +CL LF
Sbjct: 199 VRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]
BLAST of Carg18451 vs. TAIR10
Match: AT1G19310.1 (RING/U-box superfamily protein)

HSP 1 Score: 84.7 bits (208), Expect = 7.7e-17
Identity = 46/103 (44.66%), Postives = 52/103 (50.49%), Query Frame = 0 

Query: 9   DADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXXXXXXXXXX 68
           D +   S  FECNICLD  QDP+VTLCGHLFCWPC+YKW+   S S              
Sbjct: 12  DTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKD---------CPV 71

Query: 69  XXXXXSHATLVPLY--GKFQTTPPSKTKPPSNLGPAIPRRPLG 110
                    LVPLY  GK    P SK+ P    G  +P RP G
Sbjct: 72  CKAVIEEDRLVPLYGRGKSSADPRSKSIP----GLEVPNRPSG 101

[Close]
BLAST of Carg18451 vs. TAIR10
Match: AT1G74990.1 (RING/U-box superfamily protein)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-16
Identity = 40/101 (39.60%), Postives = 54/101 (53.47%), Query Frame = 0 

Query: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXXXXXXXX 66
           + + ++  S+ F CNICL+  ++P+VTLCGHLFCWPC+YKW+ Y S S+           
Sbjct: 6   ITNEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNH---------C 65

Query: 67  XXXXXXXSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRP 108
                     TLVPLYG     P S  +   N G  +P RP
Sbjct: 66  PVCKALVKEDTLVPLYG--MGKPSSDPRSKLNSGVTVPNRP 95

[Close]
BLAST of Carg18451 vs. Swiss-Prot
Match: sp|Q6R567|RMA1_CAPAN (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.2e-40
Identity = 95/227 (41.85%), Postives = 122/227 (53.74%), Query Frame = 0 

Query: 9   DADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXXXXXXXXXX 68
           + +E +S GF+CNICLD V +PV+TLCGHL+CWPCIYKWI ++S+SS+            
Sbjct: 30  EVEENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSEN-SDQQQPQCPV 89

Query: 69  XXXXXSHATLVPLYGK-FQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPXXXXXXXXXXX 128
                S  TL+PLYG+  Q+T PS+ K P NLG  IP+RP  P CGG             
Sbjct: 90  CKAEVSEKTLIPLYGRGGQSTKPSEGKAP-NLGIVIPQRPPSPRCGGH--FLLPTTDSNP 149

Query: 129 XXXXXXXXXXXXXXXXXXXXXXXNIIHPVI------------GMFGDAVYTRTFGNTTTN 188
                                   +  P++             M G+  Y R FGN++T 
Sbjct: 150 SQLLQRRGYQQQSQTRQPAYQGSYMSSPMLSPGGATANMLQHSMIGEVAYARIFGNSSTT 209

Query: 189 LYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           +YTYPNSY    +SS R+RR + QAD SL RICFFLFCC V CL+LF
Sbjct: 210 MYTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCLILF 252

[Close]
BLAST of Carg18451 vs. Swiss-Prot
Match: sp|O64425|RMA1_ARATH (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-27
Identity = 73/204 (35.78%), Postives = 99/204 (48.53%), Query Frame = 0 

Query: 10  ADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXXXXXXXXXXX 69
           +D+     F+CNICLDSVQ+PVVTLCGHLFCWPCI+KW+  +S S+              
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSD-EYQRHRQCPVC 97

Query: 70  XXXXSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPXXXXXXXXXXXXX 129
               SH+TLVPLYG+ + T   + K       ++P+RP+GP    E              
Sbjct: 98  KSKVSHSTLVPLYGRGRCTTQEEGK------NSVPKRPVGPVYRLEMPNSPYASTDLRLS 157

Query: 130 XXXXXXXXXXXXXXXXXXXXXN------IIHPVIGMFGDAVYTRTFGNTTTNLYTYPNSY 189
                                N      ++ PV+ M G+ V TR FG    + + YP++Y
Sbjct: 158 QRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTY 217

Query: 190 GHVSNSSVRLRRHIMQADESLSRI 208
                S  R+RR IMQAD+SL RI
Sbjct: 218 NLAGTSGPRMRRRIMQADKSLGRI 234

[Close]
BLAST of Carg18451 vs. Swiss-Prot
Match: sp|Q8GUK7|RMA3_ARATH (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-24
Identity = 84/234 (35.90%), Postives = 107/234 (45.73%), Query Frame = 0 

Query: 4   LYLVPDADEGVSHG-FECNICLDSVQDPVVTLCGHLFCWPCIYKW--IQYKSLSSQQXXX 63
           L   P A +    G F+CNICLD+  DPVVTLCGHLFCWPCIYKW  +Q  S+S  Q   
Sbjct: 27  LTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQ--- 86

Query: 64  XXXXXXXXXXXXXSHATLVPLYGKFQTTPPSK--TKPPSNLGPAIPRRPLGPACGGEP-- 123
                        +  +LVPLYG+  ++P S   +K    L   IPRRP  P+    P  
Sbjct: 87  -HQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP-APSALRNPIT 146

Query: 124 --------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIIHPVIGMFGDAVYTRT 183
                          X                          + ++PVIGMFGD VYTR 
Sbjct: 147 SASSLNPSLQHQTLSXSFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRI 206

Query: 184 FGNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           FG T TN    P              + +MQ ++SL+R+  F  CC++LCLLLF
Sbjct: 207 FG-TFTNTIAQPYQ-----------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]
BLAST of Carg18451 vs. Swiss-Prot
Match: sp|P93030|RMA2_ARATH (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.2e-24
Identity = 79/212 (37.26%), Postives = 102/212 (48.11%), Query Frame = 0 

Query: 18  FECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQ-----XXXXXXXXXXXXXXX 77
           F+CNICLD V+DPVVTLCGHLFCWPCI+KW  Y S +S+Q                    
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKW-TYASNNSRQRVDQYDHKREPPKCPVCKSD 78

Query: 78  XSHATLVPLYGKFQTTPPSKTKPPSN-LGPAIPRRPLGPACG-GEPXXXXXXXXXXXXXX 137
            S ATLVP+YG+ Q  P S +  PS   GP    R +G   G GE               
Sbjct: 79  VSEATLVPIYGRGQKAPQSGSNVPSRPTGPVYDLRGVGQRLGEGE--------------- 138

Query: 138 XXXXXXXXXXXXXXXXXXXXNIIHPVIGMFGDAVYTRTFGNTTTNLYTYPNSYGHVSNSS 197
                                +  PV+G+  + VY R FG +++N+  Y        + +
Sbjct: 139 --------------SQRYMYRMPDPVMGVVCEMVYRRLFGESSSNMAPY-------RDMN 193

Query: 198 VRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           VR RR  MQA+ESLSR+  FL C + +CL LF
Sbjct: 199 VRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]
BLAST of Carg18451 vs. Swiss-Prot
Match: sp|Q96GF1|RN185_HUMAN (E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-10
Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 0 

Query: 13  GVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXXXXXXXXXXXXXX 72
           G    FECNICLD+ +D V++LCGHLFCWPC+++W++ +                     
Sbjct: 32  GQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETR---------PNRQVCPVCKAG 91

Query: 73  XSHATLVPLYGKFQT---TPPSKTKP 96
            S   ++PLYG+  T    P  KT P
Sbjct: 92  ISRDKVIPLYGRGSTGQQDPREKTPP 108

[Close]
BLAST of Carg18451 vs. TrEMBL
Match: tr|A0A0A0KB39|A0A0A0KB39_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G128040 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 129/228 (56.58%), Postives = 142/228 (62.28%), Query Frame = 0 

Query: 3   QLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXXXX 62
           Q+Y + DA++  SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+  K LS+Q+     
Sbjct: 27  QIY-ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQR-CQQV 86

Query: 63  XXXXXXXXXXXSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLG--------PACGG 122
                      S ATLVP+YGKFQTT  SK + P NLGPAIPRRPLG        PA   
Sbjct: 87  ECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPT 146

Query: 123 EPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIIHPVIGMFGDAVYTRTFGNTTT 182
                                               NIIHPVIGMFGD +Y RTFGNTTT
Sbjct: 147 PQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTT 206

Query: 183 NLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           NLYTYPNSYG+V+NSSVRLRRHIMQADESLSRICF        CLLLF
Sbjct: 207 NLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFXXXXXXXXCLLLF 252

[Close]
BLAST of Carg18451 vs. TrEMBL
Match: tr|A0A1S3BJB6|A0A1S3BJB6_CUCME (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103490524 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.7e-58
Identity = 127/224 (56.70%), Postives = 138/224 (61.61%), Query Frame = 0 

Query: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXXXXXXXX 66
           + DA++  SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+  K LS+QQ         
Sbjct: 30  ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHSKKLSAQQ-CQQVECRC 89

Query: 67  XXXXXXXSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLG--------PACGGEPXX 126
                  S ATL+P+YGKFQTT  SK K P NLGPAIPRRPLG        PA       
Sbjct: 90  PVCKAKVSRATLIPIYGKFQTTDASKAKAPPNLGPAIPRRPLGWHACEAETPASPTPQLH 149

Query: 127 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIIHPVIGMFGDAVYTRTFGNTTTNLYT 186
                                           NIIHPVIGMFGD +Y RT GNTTTNLY+
Sbjct: 150 SHNYSPQSHSYYSQTQNEYISSSMLSSSSITTNIIHPVIGMFGDTIYPRTLGNTTTNLYS 209

Query: 187 YPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           YPNSYG+VSNSSVRLRRHIMQADESLSRICF        CLLLF
Sbjct: 210 YPNSYGNVSNSSVRLRRHIMQADESLSRICFXXXXXXXXCLLLF 252

[Close]
BLAST of Carg18451 vs. TrEMBL
Match: tr|A0A1Q3BR73|A0A1Q3BR73_CEPFO (Zf-C3HC4_2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_13926 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.1e-49
Identity = 113/229 (49.34%), Postives = 134/229 (58.52%), Query Frame = 0 

Query: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXXXXXXXX 66
           V D+D+ +S GFECNICL+SVQ+PVVTLCGHL+CWPCIYKW+ ++  SS +         
Sbjct: 34  VTDSDDNLSGGFECNICLESVQEPVVTLCGHLYCWPCIYKWLHFQG-SSAEDQEQNQQRC 93

Query: 67  XXXXXXXSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACG-GEP--------- 126
                  SH TLVPLY + QTT PSK K P +LG  IPRRPLGP CG G P         
Sbjct: 94  PVCKAEVSHTTLVPLYARGQTTKPSKGKAP-HLGIVIPRRPLGPPCGVGTPRSPGTANSP 153

Query: 127 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIIHPVIGMFGDAVYTRTFGNTT 186
                                                N+  PVIGMFG+ VY R FGN+ 
Sbjct: 154 RFLSQQLNRSFPSHQRLYHSQRDSYPSAMLSPSGTTTNVFDPVIGMFGEMVYARVFGNSM 213

Query: 187 TNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           TN+Y+YP+ Y    +SS R RRHIMQAD+SL RICFFLFCCL+LCLLLF
Sbjct: 214 TNMYSYPSPYHLAGSSSPRFRRHIMQADKSLDRICFFLFCCLILCLLLF 260

[Close]
BLAST of Carg18451 vs. TrEMBL
Match: tr|A0A2P4JTN1|A0A2P4JTN1_QUESU (E3 ubiquitin-protein ligase rma1h1 OS=Quercus suber OX=58331 GN=CFP56_65318 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.4e-49
Identity = 111/230 (48.26%), Postives = 137/230 (59.57%), Query Frame = 0 

Query: 6   LVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXXXXXXX 65
           ++PD++   S GF+C+ICL+ VQDPVVTLCGHL+CWPCIYKW+  ++ S++         
Sbjct: 18  IIPDSENNASSGFDCSICLELVQDPVVTLCGHLYCWPCIYKWLHSQNASTED--EEQQQQ 77

Query: 66  XXXXXXXXSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACG-GEP-------- 125
                   S ++LVPLYGK QTT  SKTK P +LG  IPRRPLGPAC  G P        
Sbjct: 78  CPVCKAEISQSSLVPLYGKGQTTKLSKTKAP-HLGVVIPRRPLGPACWVGTPRSTSPTRS 137

Query: 126 ----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIIHPVIGMFGDAVYTRTFGNT 185
                                                 N++ P+IG+FG+ VY R FGNT
Sbjct: 138 PHQTEQLYHGNYSYQSQLYQPNSGGYTTSSMTPGGTVTNLLDPMIGVFGEMVYARVFGNT 197

Query: 186 TTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
            TNLYTYPNSY    ++S R+RRH+MQAD SL+RICFFLFCCLVLCLLLF
Sbjct: 198 MTNLYTYPNSYNLAGSNSPRVRRHVMQADRSLNRICFFLFCCLVLCLLLF 244

[Close]
BLAST of Carg18451 vs. TrEMBL
Match: tr|A0A067JX84|A0A067JX84_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25796 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 105/230 (45.65%), Postives = 134/230 (58.26%), Query Frame = 0 

Query: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQXXXXXXXXX 66
           + D+++  S GFECNICLDSVQ+PVVTLCGHL+CWPCIYKW+ ++S+S++          
Sbjct: 29  IADSEDSTSSGFECNICLDSVQEPVVTLCGHLYCWPCIYKWLHFQSISAENEDLEPQQQC 88

Query: 67  XXXXXXXSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGE----------- 126
                  S  TLVPL+G+ QT  PSK+K P NLG  IPRRPLG ACG +           
Sbjct: 89  PVCKAEVSEGTLVPLFGRGQTAKPSKSKAP-NLGIIIPRRPLGLACGFDSPRSPFMTSSP 148

Query: 127 ---PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIIHPVIGMFGDAVYTRTFGNT 186
                                                 N+  PVIGMFG+ +Y R FGN+
Sbjct: 149 QPTQQTYNRNYTNHSQVYYSRPGGYSPSPMINPRVTAANMFDPVIGMFGEMIYARVFGNS 208

Query: 187 TTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
            TN+Y+YP+SY    ++S R+RRH+MQAD+SLSRICFFLFCC+ LC L F
Sbjct: 209 VTNIYSYPDSYNLAGSTSPRVRRHVMQADKSLSRICFFLFCCVFLCFLSF 257

The following BLAST results are available for this feature:
BLAST of Carg18451 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023513341.13.1e-8881.98E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo][more]
XP_022943375.15.2e-8890.99E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022943376.1 E3 ... [more]
XP_022986029.17.1e-8580.45E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022986030.1 E3 ub... [more]
XP_022140292.11.5e-6660.44E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022140293.1 E3... [more]
XP_004139942.11.9e-5856.58PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >KGN46743.1 hypo... [more]
BLAST of Carg18451 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G03510.16.7e-2935.78RING membrane-anchor 1[more]
AT4G27470.11.5e-2535.90RING membrane-anchor 3[more]
AT4G28270.13.4e-2537.26RING membrane-anchor 2[more]
AT1G19310.17.7e-1744.66RING/U-box superfamily protein[more]
AT1G74990.11.3e-1639.60RING/U-box superfamily protein[more]
BLAST of Carg18451 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6R567|RMA1_CAPAN1.2e-4041.85E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=... [more]
sp|O64425|RMA1_ARATH1.2e-2735.78E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV... [more]
sp|Q8GUK7|RMA3_ARATH2.8e-2435.90E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV... [more]
sp|P93030|RMA2_ARATH6.2e-2437.26E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV... [more]
sp|Q96GF1|RN185_HUMAN1.8e-1037.21E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1[more]
BLAST of Carg18451 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KB39|A0A0A0KB39_CUCSA1.3e-5856.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G128040 PE=4 SV=1[more]
tr|A0A1S3BJB6|A0A1S3BJB6_CUCME3.7e-5856.70E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103490524 PE=4 ... [more]
tr|A0A1Q3BR73|A0A1Q3BR73_CEPFO1.1e-4949.34Zf-C3HC4_2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_... [more]
tr|A0A2P4JTN1|A0A2P4JTN1_QUESU5.4e-4948.26E3 ubiquitin-protein ligase rma1h1 OS=Quercus suber OX=58331 GN=CFP56_65318 PE=4... [more]
tr|A0A067JX84|A0A067JX84_JATCU1.2e-4845.65Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25796 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18451-RACarg18451-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 20..69
e-value: 1.0E-8
score: 44.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 20..70
score: 12.858
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 7..92
e-value: 3.2E-17
score: 64.1
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 20..69
e-value: 3.5E-8
score: 33.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..125
NoneNo IPR availablePANTHERPTHR12313:SF5E3 UBIQUITIN-PROTEIN LIGASE RMA1-RELATEDcoord: 9..222
NoneNo IPR availablePANTHERPTHR12313RNF5coord: 9..222
NoneNo IPR availableCDDcd16745RING-HC_AtRMA_likecoord: 18..71
e-value: 3.27162E-23
score: 88.13
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 14..82
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 35..44