CmoCh20G002150 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G002150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	E3 ubiquitin-protein ligase
Location	Cmo_Chr20 : 1036067 .. 1038291 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGACGCCGCATCGTCATCGTCCCATCCTCTTCCCTTTCCCTTCCTTTTTCTATTTCCGTAGAATTATAGATACCTTCGCTCTCCCCTTTTCTCGTCCCTATATAAACACCCTTCAAAACTCACCATCACTCTGTTCTTAATTTTACGCCCATTTAGCCCTTTTCAACTAAGCTTCTTACTCATCCCGCGATTCGGTTTCGGTACGTTTCTGTTTCGCCCTTTTCTCTCTGTGTGTTACTTCTAGATGGGGTTGTGTTTCTCAGGGGAATGGTCTTTTTTGATCTGTTTGCTAATGGAGATGGGGTTTTTGTTCTTCAGGTTCTTGGTTTAGGTTTCTCTAATGGAGATGGGGTTCTTTGTTTTTGAGTTGATTTTCGTCGCTTCCAACTCCAACCCCGTTCTCCTGGATGGATTTTTATTGGGTTTTCTTTGTTTTCTGGAAACTGTTCTATTTGTTCAACAGTAGGCAATTTTTCGTGCTCTGTTTTTACTCTGTTTTGTGTGGCGGAGCGTGGTGATGTCTTCATTCAATCATTTTGTTTTCTGGGTGTTCTTATTTCCCAAAGATCATACGCCTATAGAACTTTTCTCAAGTGATAAACATCGATAATCTTGTTTTCTGGGTGTTCTTATTGGCTCTTTAAATCGGAAGTTCATCATGGTTTTATTAATTGTAACTTGGGCTTGAATTCACTTTTGTTAATTGTTGGGATTGATGCCTTTTTGATTTCTTCTACGCATGATTATGCCTTTCGGATCTGTTTCCCAAGTAATAGACTGATGATTCTTTTCACTTTCAAGTGGTTTGCTTGCATATGAGTTTATCTGCTTCAAAAGAAAGCTTATAGATGCTTGAATTTCTTAATTAAATCAATTGAATCATCTGGGTCTGTCAAGATCATCGTATTCTGATATTTATGGGAACTTCAGAAATCATCCACATCATCTCCCAGTTGGAGGTTTCGTGAAAGAATGTTCAAGAACTGGCCCTTCAGATTACAATAATCTATGAGCTCAGGAACCAATGGATTAGGATGATAGTTTGGCATCTTATCACTGCTGCAATGGATGGGATGTTTTTGGTTTATTGATGAGTGCCTAGTTCGGCGTGTCTTCATAGCTTCATCTTATCCAAATTCCTGTGTGTTTTTGTCTGTTTCTGTGTGATTTTCTGATCAAATTCTGCAAGATTTCATTAATCTTGTATTGGAATTTTGTTGTCTTCTTGTTCTTCTGAGTTCTGACATTGTTTTCTGGACATGAAAACAAGACATGGAGCAGCTGTACCTTGTTCCAGAGGCTGATGAAGGAGTATCCCATGGCTTTGAATGCAACATATGCCTAGACTCGGTTCAAGATCCTGTTGTAACACTTTGTGGCCATCTCTTCTGTTGGCCCTGCATTTACAAATGGATCCATTACAAGAGCTTGTCCTCACAGCAACAATGCCAGCAAGAGGAATGTCGATGTCCCGTTTGCAAGGCCGAGGTCTCCCACGCCACGCTCGTCCCACTTTACGGCAAATTTCAGACTACACCTCCCTCCAAAACTAAACCACCATCAAATCTTGGTCCAGCCATCCCACGCCGGCCTCTTGGTCCTGCCTGTGGGGGAGAGCCACCAGCATCTCCAAGCGCTCAACTTCATCATCACAACTATTCTCAGTCACACGACGATTACATCGCTTCATCGATGCTTAGCTCGAGCAGTATTACAACGAACATTATCCACCCAGTGATCGGAATGTTCGGTGACGCAGTTTACACAAGAACGTTTGGAAACACGACGTCAAACCTTTATACTTATCCTAATTCATATGGTCATGTAAGCAATAGTAGTGTAAGGCTGAGGAGGCACATAATGCAGGCCGATGAGTCGCTGAGCAGAATCTGTTTCTTCCTGTTTTGTTGCTTAGTGTTGTGTCTTTTATTATTCTAAGCCGCTCGCTTTAGATCATTTCTAGCCATTGGATGCATATATATAGATATATAACATGTCAATACGAGCTTAGTGTAATCATGAATGGATTCACATTGCTTTGATTTGGACATTTCGTAAGCAATCGGCAAGTTGCTGCATTTGTGACCCATCTTCCACATAACACGTCTACTCACCATGTTTTGAAGCTCCAATTGAGTGGAATCGGACCGGATTTGGTGGCCCGTGCGTTTGTTTATCAACTTACGTTCGCCATTTGAAATTTTCCTCTAAGGGTTTTCTTCA

mRNA sequence

TGAGACGCCGCATCGTCATCGTCCCATCCTCTTCCCTTTCCCTTCCTTTTTCTATTTCCGTAGAATTATAGATACCTTCGCTCTCCCCTTTTCTCGTCCCTATATAAACACCCTTCAAAACTCACCATCACTCTGTTCTTAATTTTACGCCCATTTAGCCCTTTTCAACTAAGCTTCTTACTCATCCCGCGATTCGGTTTCGATGGAGCAGCTGTACCTTGTTCCAGAGGCTGATGAAGGAGTATCCCATGGCTTTGAATGCAACATATGCCTAGACTCGGTTCAAGATCCTGTTGTAACACTTTGTGGCCATCTCTTCTGTTGGCCCTGCATTTACAAATGGATCCATTACAAGAGCTTGTCCTCACAGCAACAATGCCAGCAAGAGGAATGTCGATGTCCCGTTTGCAAGGCCGAGGTCTCCCACGCCACGCTCGTCCCACTTTACGGCAAATTTCAGACTACACCTCCCTCCAAAACTAAACCACCATCAAATCTTGGTCCAGCCATCCCACGCCGGCCTCTTGGTCCTGCCTGTGGGGGAGAGCCACCAGCATCTCCAAGCGCTCAACTTCATCATCACAACTATTCTCAGTCACACGACGATTACATCGCTTCATCGATGCTTAGCTCGAGCAGTATTACAACGAACATTATCCACCCAGTGATCGGAATGTTCGGTGACGCAGTTTACACAAGAACGTTTGGAAACACGACGTCAAACCTTTATACTTATCCTAATTCATATGGTCATGTAAGCAATAGTAGTGTAAGGCTGAGGAGGCACATAATGCAGGCCGATGAGTCGCTGAGCAGAATCTGTTTCTTCCTGTTTTGTTGCTTAGTGTTGTGTCTTTTATTATTCTAAGCCGCTCGCTTTAGATCATTTCTAGCCATTGGATGCATATATATAGATATATAACATGTCAATACGAGCTTAGTGTAATCATGAATGGATTCACATTGCTTTGATTTGGACATTTCGTAAGCAATCGGCAAGTTGCTGCATTTGTGACCCATCTTCCACATAACACGTCTACTCACCATGTTTTGAAGCTCCAATTGAGTGGAATCGGACCGGATTTGGTGGCCCGTGCGTTTGTTTATCAACTTACGTTCGCCATTTGAAATTTTCCTCTAAGGGTTTTCTTCA

Coding sequence (CDS)

ATGGAGCAGCTGTACCTTGTTCCAGAGGCTGATGAAGGAGTATCCCATGGCTTTGAATGCAACATATGCCTAGACTCGGTTCAAGATCCTGTTGTAACACTTTGTGGCCATCTCTTCTGTTGGCCCTGCATTTACAAATGGATCCATTACAAGAGCTTGTCCTCACAGCAACAATGCCAGCAAGAGGAATGTCGATGTCCCGTTTGCAAGGCCGAGGTCTCCCACGCCACGCTCGTCCCACTTTACGGCAAATTTCAGACTACACCTCCCTCCAAAACTAAACCACCATCAAATCTTGGTCCAGCCATCCCACGCCGGCCTCTTGGTCCTGCCTGTGGGGGAGAGCCACCAGCATCTCCAAGCGCTCAACTTCATCATCACAACTATTCTCAGTCACACGACGATTACATCGCTTCATCGATGCTTAGCTCGAGCAGTATTACAACGAACATTATCCACCCAGTGATCGGAATGTTCGGTGACGCAGTTTACACAAGAACGTTTGGAAACACGACGTCAAACCTTTATACTTATCCTAATTCATATGGTCATGTAAGCAATAGTAGTGTAAGGCTGAGGAGGCACATAATGCAGGCCGATGAGTCGCTGAGCAGAATCTGTTTCTTCCTGTTTTGTTGCTTAGTGTTGTGTCTTTTATTATTCTAA

Homology

[Close]

BLAST of CmoCh20G002150 vs. Swiss-Prot
Match: RMA1_CAPAN (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.6e-56
Identity = 116/227 (51.10%), Postives = 149/227 (65.64%), Query Frame = 1


Query: 9   EADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPV 68
           E +E +S GF+CNICLD V +PV+TLCGHL+CWPCIYKWI+++S+SS+   QQ+  +CPV
Sbjct: 30  EVEENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQP-QCPV 89

Query: 69  CKAEVSHATLVPLYGK-FQTTPPSKTKPPSNLGPAIPRRPLGPACGGE-----PPASPSA 128
           CKAEVS  TL+PLYG+  Q+T PS+ K P NLG  IP+RP  P CGG        ++PS 
Sbjct: 90  CKAEVSEKTLIPLYGRGGQSTKPSEGKAP-NLGIVIPQRPPSPRCGGHFLLPTTDSNPSQ 149

Query: 129 QLHHHNYSQS--------HDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTSN 188
            L    Y Q            Y++S MLS    T N++     M G+  Y R FGN+++ 
Sbjct: 150 LLQRRGYQQQSQTRQPAYQGSYMSSPMLSPGGATANMLQH--SMIGEVAYARIFGNSSTT 209

Query: 189 LYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           +YTYPNSY    +SS R+RR + QAD SL RICFFLFCC V CL+LF
Sbjct: 210 MYTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCLILF 252

[Close]

BLAST of CmoCh20G002150 vs. Swiss-Prot
Match: RMA1_ARATH (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-45
Identity = 103/220 (46.82%), Postives = 141/220 (64.09%), Query Frame = 1


Query: 10  ADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPVC 69
           +D+     F+CNICLDSVQ+PVVTLCGHLFCWPCI+KW+  +S S+  + Q+   +CPVC
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHR-QCPVC 97

Query: 70  KAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSA------- 129
           K++VSH+TLVPLYG+ + T   + K       ++P+RP+GP    E P SP A       
Sbjct: 98  KSKVSHSTLVPLYGRGRCTTQEEGKN------SVPKRPVGPVYRLEMPNSPYASTDLRLS 157

Query: 130 QLHHHNYSQSHDDYIASSMLSSSSITTN-IIHPVIGMFGDAVYTRTFGNTTSNLYTYPNS 189
           Q  H N S     Y  S ++SS+S++ + ++ PV+ M G+ V TR FG    + + YP++
Sbjct: 158 QRVHFN-SPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDT 217

Query: 190 YGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           Y     S  R+RR IMQAD+SL RI FF  CC+VLCLLLF
Sbjct: 218 YNLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of CmoCh20G002150 vs. Swiss-Prot
Match: RMA3_ARATH (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.4e-35
Identity = 94/233 (40.34%), Postives = 129/233 (55.36%), Query Frame = 1


Query: 4   LYLVPEADEGVSHG-FECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQE 63
           L   P A +    G F+CNICLD+  DPVVTLCGHLFCWPCIYKW+H +   S     Q 
Sbjct: 27  LTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQ--LSSVSVDQH 86

Query: 64  ECRCPVCKAEVSHATLVPLYGKFQTTPPSK--TKPPSNLGPAIPRRPLGPACGGEPPASP 123
           +  CPVCK+ ++  +LVPLYG+  ++P S   +K    L   IPRRP  P+    P  S 
Sbjct: 87  QNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP-APSALRNPITSA 146

Query: 124 SA------------QLHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTF 183
           S+              H+H YS        S+ L ++++  + ++PVIGMFGD VYTR F
Sbjct: 147 SSLNPSLQHQTLSPSFHNHQYSPRGFTTTESTDL-ANAVMMSFLYPVIGMFGDLVYTRIF 206

Query: 184 GNTTSNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           G       T+ N+      S     + +MQ ++SL+R+  F  CC++LCLLLF
Sbjct: 207 G-------TFTNTIAQPYQS-----QRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of CmoCh20G002150 vs. Swiss-Prot
Match: RMA2_ARATH (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.1e-32
Identity = 87/209 (41.63%), Postives = 112/209 (53.59%), Query Frame = 1


Query: 18  FECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQ-----EECRCPVCKAE 77
           F+CNICLD V+DPVVTLCGHLFCWPCI+KW  Y S +S+Q+  Q     E  +CPVCK++
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWT-YASNNSRQRVDQYDHKREPPKCPVCKSD 78

Query: 78  VSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQLHHHNYSQS 137
           VS ATLVP+YG+ Q  P S        G  +P RP GP            +     Y   
Sbjct: 79  VSEATLVPIYGRGQKAPQS--------GSNVPSRPTGPVYDLRGVGQRLGEGESQRYMYR 138

Query: 138 HDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTSNLYTYPNSYGHVSNSSVRL 197
             D                  PV+G+  + VY R FG ++SN+  Y        + +VR 
Sbjct: 139 MPD------------------PVMGVVCEMVYRRLFGESSSNMAPY-------RDMNVRS 193

Query: 198 RRHIMQADESLSRICFFLFCCLVLCLLLF 222
           RR  MQA+ESLSR+  FL C + +CL LF
Sbjct: 199 RRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of CmoCh20G002150 vs. Swiss-Prot
Match: RNF5_MOUSE (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-15
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 1


Query: 13  GVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPVCKAE 72
           G S  FECNICL++ ++ VV++CGHL+CWPC+++W+         + + +   CPVCKA 
Sbjct: 20  GASATFECNICLETAREAVVSVCGHLYCWPCLHQWL---------ETRPDRQECPVCKAG 79

Query: 73  VSHATLVPLYGKFQTTP--PSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQLH 126
           +S   +VPLYG+    P  P    PP   G    +RP   + GG  P   +   H
Sbjct: 80  ISREKVVPLYGRGSQKPQDPRLKTPPRPQG----QRPAPESRGGFQPFGDAGGFH 121

[Close]

BLAST of CmoCh20G002150 vs. TrEMBL
Match: A0A0A0KB39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128040 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 6.2e-92
Identity = 173/228 (75.88%), Postives = 194/228 (85.09%), Query Frame = 1


Query: 3   QLYLVPEADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQE 62
           Q+Y + +A++  SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+H K LS+ Q+CQQ 
Sbjct: 27  QIY-ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSA-QRCQQV 86

Query: 63  ECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLG-PACGGEPPASPS 122
           ECRCPVCKA+VS ATLVP+YGKFQTT  SK + P NLGPAIPRRPLG  AC  E PASP+
Sbjct: 87  ECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPT 146

Query: 123 AQLHHHNYS--------QSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTS 182
            QLH  NYS        Q+ ++YIASSMLSSSSITTNIIHPVIGMFGD +Y RTFGNTT+
Sbjct: 147 PQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTT 206

Query: 183 NLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           NLYTYPNSYG+V+NSSVRLRRHIMQADESLSRICFF FCCLV+CLLLF
Sbjct: 207 NLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 252

[Close]

BLAST of CmoCh20G002150 vs. TrEMBL
Match: W9STC6_9ROSA (E3 ubiquitin-protein ligase OS=Morus notabilis GN=L484_009813 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 4.2e-64
Identity = 130/223 (58.30%), Postives = 156/223 (69.96%), Query Frame = 1


Query: 9   EADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPV 68
           + D   S GF+CNICLD+V DPVVTLCGHLFCWPCIYKW+H++S   +QQ QQ    CPV
Sbjct: 33  DGDNNPSTGFDCNICLDTVHDPVVTLCGHLFCWPCIYKWLHFQSTQEEQQQQQ----CPV 92

Query: 69  CKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPA---SPSAQLH 128
           CKAEVS A+LVPLYG+ QTT PSK K P NLG  IP+RPLGP  G + P+   SP     
Sbjct: 93  CKAEVSQASLVPLYGRGQTTKPSKGKAP-NLGIVIPKRPLGPFYGVDSPSVLTSPHMSQQ 152

Query: 129 HHNY-------SQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTSNLYTY 188
            + Y       S     +  S MLS S + TN+  P IG+FG+ +Y R FGN+ +NLYTY
Sbjct: 153 FYRYPHQSQLNSSRRGSHAPSPMLSPSGVATNLFDPTIGIFGEMIYARVFGNSITNLYTY 212

Query: 189 PNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           PNSY  V N+S R+RRH+MQAD+SL R+CFFLFCC VLCLLLF
Sbjct: 213 PNSYNLVGNASPRVRRHVMQADKSLGRVCFFLFCCSVLCLLLF 250

[Close]

BLAST of CmoCh20G002150 vs. TrEMBL
Match: A0A061EAU9_THECC (RING membrane-anchor 1, putative isoform 1 OS=Theobroma cacao GN=TCM_008094 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-63
Identity = 125/222 (56.31%), Postives = 160/222 (72.07%), Query Frame = 1


Query: 7   VPEADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRC 66
           V ++D+  S GF+CNICLDSVQDPVVTLCGHL+CWPCIYKW+H++++S++ Q +Q++ +C
Sbjct: 34  VTDSDDNPSGGFDCNICLDSVQDPVVTLCGHLYCWPCIYKWLHFQTISTENQ-EQKQQQC 93

Query: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQLHH 126
           PVCKAEVSH TLVPLYG+  TT  S+ K P      IP+RPL P       +  + QLHH
Sbjct: 94  PVCKAEVSHTTLVPLYGRGLTTKASRGKTP-QFDVVIPKRPLAPTPNTTNSSQFAQQLHH 153

Query: 127 HNYS-------QSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTSNLYTYP 186
             YS         H  Y AS +LS   +T N++ PV  MFG+ VYTR FGN+ +NLYTYP
Sbjct: 154 RGYSYQPQMSYPQHGSYPASPLLSPGGMTINVLDPVTRMFGEMVYTRVFGNSITNLYTYP 213

Query: 187 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           NSY    ++S R+RRH+MQAD+SLSRI FFLFCC++LCLLLF
Sbjct: 214 NSYNLAGSTSPRIRRHVMQADKSLSRISFFLFCCIILCLLLF 253

[Close]

BLAST of CmoCh20G002150 vs. TrEMBL
Match: B9N2C6_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s13210g PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.7e-63
Identity = 130/229 (56.77%), Postives = 163/229 (71.18%), Query Frame = 1


Query: 9   EADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPV 68
           ++DE  S+GF+CNICLDSVQDPVVTLCGHL+CWPCIYKW+H +S+S++ Q QQ + +CPV
Sbjct: 36  DSDESPSNGFDCNICLDSVQDPVVTLCGHLYCWPCIYKWLHSQSISAENQDQQPQQQCPV 95

Query: 69  CKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSA------ 128
           CKAEVS +T+VPL+G+ QTT PS  K P N+G  IP RP G ACG + P +P A      
Sbjct: 96  CKAEVSQSTIVPLFGRGQTTKPSMRKAP-NVGIIIPHRPPGLACGFDSPRTPIATGSPRP 155

Query: 129 --QLHH-HNY---SQSH----DDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTT 188
             Q+HH HNY   SQ H      Y AS M S    T N+  PV+GMFG+ +Y R FGN+ 
Sbjct: 156 VQQIHHRHNYPHQSQLHYSQPGSYSASPMHSPRGTTINMADPVVGMFGEMIYARVFGNSI 215

Query: 189 SNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           +N+ +YPNSY    ++S R+RRH+MQAD SLSRICFFLFCC+ LC L F
Sbjct: 216 TNMPSYPNSYHLAGSASPRVRRHVMQADRSLSRICFFLFCCVFLCFLSF 263

[Close]

BLAST of CmoCh20G002150 vs. TrEMBL
Match: F6H5B3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03860 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.8e-62
Identity = 134/241 (55.60%), Postives = 164/241 (68.05%), Query Frame = 1


Query: 1   MEQLYLVPEADEGVSH----GFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQ 60
           ME    V  AD G       GF+CNICLD VQDPVVTLCGHLFCWPCIYKW+H++S+S++
Sbjct: 117 MENWKPVSAADNGSDKNSYGGFDCNICLDFVQDPVVTLCGHLFCWPCIYKWLHFQSISTE 176

Query: 61  QQCQQEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEP 120
               Q+  +CPVCKAEVS  TL+PLYG+ Q T PS  K P +    IPRRP GPACG + 
Sbjct: 177 NP-DQKHPQCPVCKAEVSDTTLIPLYGRGQATKPSNAKAP-HPDIFIPRRPSGPACGVDA 236

Query: 121 PASP--------SAQLHHHNY---SQSH----DDYIASSMLSSSSITT-NIIHPVIGMFG 180
           P +P        S QL++ NY   SQ +      Y  S +LS   +TT +  HP++GMFG
Sbjct: 237 PLTPTTTANPQPSRQLYYRNYRHHSQPYHPHPSSYAESPILSPGGMTTTSTYHPIMGMFG 296

Query: 181 DAVYTRTFGNTTSNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLL 222
           + VY R FGN+  NLYTYPNSY    N+S R+RRH+MQAD+SLSRICFFLFCC++LCLLL
Sbjct: 297 EMVYARVFGNSVQNLYTYPNSYHLAGNTSSRMRRHVMQADKSLSRICFFLFCCILLCLLL 355

[Close]

BLAST of CmoCh20G002150 vs. TAIR10
Match: AT4G03510.1 (AT4G03510.1 RING membrane-anchor 1)

HSP 1 Score: 184.1 bits (466), Expect = 9.3e-47
Identity = 103/220 (46.82%), Postives = 141/220 (64.09%), Query Frame = 1


Query: 10  ADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPVC 69
           +D+     F+CNICLDSVQ+PVVTLCGHLFCWPCI+KW+  +S S+  + Q+   +CPVC
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHR-QCPVC 97

Query: 70  KAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSA------- 129
           K++VSH+TLVPLYG+ + T   + K       ++P+RP+GP    E P SP A       
Sbjct: 98  KSKVSHSTLVPLYGRGRCTTQEEGKN------SVPKRPVGPVYRLEMPNSPYASTDLRLS 157

Query: 130 QLHHHNYSQSHDDYIASSMLSSSSITTN-IIHPVIGMFGDAVYTRTFGNTTSNLYTYPNS 189
           Q  H N S     Y  S ++SS+S++ + ++ PV+ M G+ V TR FG    + + YP++
Sbjct: 158 QRVHFN-SPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDT 217

Query: 190 YGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           Y     S  R+RR IMQAD+SL RI FF  CC+VLCLLLF
Sbjct: 218 YNLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of CmoCh20G002150 vs. TAIR10
Match: AT4G27470.1 (AT4G27470.1 RING membrane-anchor 3)

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-36
Identity = 94/233 (40.34%), Postives = 129/233 (55.36%), Query Frame = 1


Query: 4   LYLVPEADEGVSHG-FECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQE 63
           L   P A +    G F+CNICLD+  DPVVTLCGHLFCWPCIYKW+H +   S     Q 
Sbjct: 27  LTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQ--LSSVSVDQH 86

Query: 64  ECRCPVCKAEVSHATLVPLYGKFQTTPPSK--TKPPSNLGPAIPRRPLGPACGGEPPASP 123
           +  CPVCK+ ++  +LVPLYG+  ++P S   +K    L   IPRRP  P+    P  S 
Sbjct: 87  QNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP-APSALRNPITSA 146

Query: 124 SA------------QLHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTF 183
           S+              H+H YS        S+ L ++++  + ++PVIGMFGD VYTR F
Sbjct: 147 SSLNPSLQHQTLSPSFHNHQYSPRGFTTTESTDL-ANAVMMSFLYPVIGMFGDLVYTRIF 206

Query: 184 GNTTSNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           G       T+ N+      S     + +MQ ++SL+R+  F  CC++LCLLLF
Sbjct: 207 G-------TFTNTIAQPYQS-----QRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of CmoCh20G002150 vs. TAIR10
Match: AT4G28270.1 (AT4G28270.1 RING membrane-anchor 2)

HSP 1 Score: 139.0 bits (349), Expect = 3.4e-33
Identity = 87/209 (41.63%), Postives = 112/209 (53.59%), Query Frame = 1


Query: 18  FECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQ-----EECRCPVCKAE 77
           F+CNICLD V+DPVVTLCGHLFCWPCI+KW  Y S +S+Q+  Q     E  +CPVCK++
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWT-YASNNSRQRVDQYDHKREPPKCPVCKSD 78

Query: 78  VSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQLHHHNYSQS 137
           VS ATLVP+YG+ Q  P S        G  +P RP GP            +     Y   
Sbjct: 79  VSEATLVPIYGRGQKAPQS--------GSNVPSRPTGPVYDLRGVGQRLGEGESQRYMYR 138

Query: 138 HDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTSNLYTYPNSYGHVSNSSVRL 197
             D                  PV+G+  + VY R FG ++SN+  Y        + +VR 
Sbjct: 139 MPD------------------PVMGVVCEMVYRRLFGESSSNMAPY-------RDMNVRS 193

Query: 198 RRHIMQADESLSRICFFLFCCLVLCLLLF 222
           RR  MQA+ESLSR+  FL C + +CL LF
Sbjct: 199 RRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of CmoCh20G002150 vs. TAIR10
Match: AT1G74990.1 (AT1G74990.1 RING/U-box superfamily protein)

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-23
Identity = 54/124 (43.55%), Postives = 68/124 (54.84%), Query Frame = 1


Query: 7   VPEADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRC 66
           +   ++  S+ F CNICL+  ++P+VTLCGHLFCWPC+YKW+HY S S+          C
Sbjct: 6   ITNEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSN---------HC 65

Query: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQLHH 126
           PVCKA V   TLVPLYG     P S  +   N G  +P R   PA      A P  +  H
Sbjct: 66  PVCKALVKEDTLVPLYG--MGKPSSDPRSKLNSGVTVPNR---PAATRTETARPRLEQRH 115

Query: 127 HNYS 131
           H  S
Sbjct: 126 HGSS 115

[Close]

BLAST of CmoCh20G002150 vs. TAIR10
Match: AT1G19310.1 (AT1G19310.1 RING/U-box superfamily protein)

HSP 1 Score: 105.1 bits (261), Expect = 5.5e-23
Identity = 64/164 (39.02%), Postives = 78/164 (47.56%), Query Frame = 1


Query: 15  SHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPVCKAEVS 74
           S  FECNICLD  QDP+VTLCGHLFCWPC+YKW+H  S S           CPVCKA + 
Sbjct: 18  SSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKD---------CPVCKAVIE 77

Query: 75  HATLVPLY--GKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQLHHHNYSQS 134
              LVPLY  GK    P SK+ P    G  +P RP G       P  P+    HH+    
Sbjct: 78  EDRLVPLYGRGKSSADPRSKSIP----GLEVPNRPSGQRPETAQPPDPNHGFAHHHGFGG 137

Query: 135 HDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTSNLY 177
                A+ M S+              FG+   +  FG    +L+
Sbjct: 138 FMGGFAAPMASA-------------RFGNVTLSAAFGGLIPSLF 155

[Close]

BLAST of CmoCh20G002150 vs. NCBI nr
Match: gi|659094879|ref|XP_008448288.1| (PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo])

HSP 1 Score: 346.3 bits (887), Expect = 4.0e-92
Identity = 171/224 (76.34%), Postives = 191/224 (85.27%), Query Frame = 1


Query: 7   VPEADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRC 66
           + +A++  SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+H K LS+QQ CQQ ECRC
Sbjct: 30  ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHSKKLSAQQ-CQQVECRC 89

Query: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLG-PACGGEPPASPSAQLH 126
           PVCKA+VS ATL+P+YGKFQTT  SK K P NLGPAIPRRPLG  AC  E PASP+ QLH
Sbjct: 90  PVCKAKVSRATLIPIYGKFQTTDASKAKAPPNLGPAIPRRPLGWHACEAETPASPTPQLH 149

Query: 127 HHN--------YSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTSNLYT 186
            HN        YSQ+ ++YI+SSMLSSSSITTNIIHPVIGMFGD +Y RT GNTT+NLY+
Sbjct: 150 SHNYSPQSHSYYSQTQNEYISSSMLSSSSITTNIIHPVIGMFGDTIYPRTLGNTTTNLYS 209

Query: 187 YPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           YPNSYG+VSNSSVRLRRHIMQADESLSRICFF FCCLV+CLLLF
Sbjct: 210 YPNSYGNVSNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 252

[Close]

BLAST of CmoCh20G002150 vs. NCBI nr
Match: gi|449444358|ref|XP_004139942.1| (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus])

HSP 1 Score: 345.1 bits (884), Expect = 8.9e-92
Identity = 173/228 (75.88%), Postives = 194/228 (85.09%), Query Frame = 1


Query: 3   QLYLVPEADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQE 62
           Q+Y + +A++  SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+H K LS+ Q+CQQ 
Sbjct: 27  QIY-ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSA-QRCQQV 86

Query: 63  ECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLG-PACGGEPPASPS 122
           ECRCPVCKA+VS ATLVP+YGKFQTT  SK + P NLGPAIPRRPLG  AC  E PASP+
Sbjct: 87  ECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPT 146

Query: 123 AQLHHHNYS--------QSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTS 182
            QLH  NYS        Q+ ++YIASSMLSSSSITTNIIHPVIGMFGD +Y RTFGNTT+
Sbjct: 147 PQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTT 206

Query: 183 NLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           NLYTYPNSYG+V+NSSVRLRRHIMQADESLSRICFF FCCLV+CLLLF
Sbjct: 207 NLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 252

[Close]

BLAST of CmoCh20G002150 vs. NCBI nr
Match: gi|1009128748|ref|XP_015881403.1| (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Ziziphus jujuba])

HSP 1 Score: 260.0 bits (663), Expect = 3.8e-66
Identity = 135/222 (60.81%), Postives = 162/222 (72.97%), Query Frame = 1


Query: 7   VPEADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRC 66
           V + D   + GFECNICLD+V DPVVTLCGHLFCWPCIYKW+H++S SS+ + Q  + +C
Sbjct: 34  VADFDNDSAGGFECNICLDTVHDPVVTLCGHLFCWPCIYKWLHFQSASSETEDQTPQ-QC 93

Query: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQ-LH 126
           PVCKAEVS A+LVPLYG+ QTT PSK K P NLG  IPRRPLGP CG + P+  + Q L+
Sbjct: 94  PVCKAEVSQASLVPLYGRGQTTKPSKGKAP-NLGIVIPRRPLGPICGFDSPSQHTTQQLY 153

Query: 127 HHNY------SQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTSNLYTYP 186
           + NY      + S   Y AS MLS    TTNI  P IGM G+ +Y R FGN+ +NLYTYP
Sbjct: 154 YQNYPNQSQLNYSQRGYSASPMLSPGGSTTNIFDPTIGMLGEMIYARVFGNSMTNLYTYP 213

Query: 187 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           NSY    +SS R+RRH+MQAD SLSRI FFLFCC++LCLLLF
Sbjct: 214 NSYHLAGSSSPRVRRHVMQADRSLSRITFFLFCCVILCLLLF 253

[Close]

BLAST of CmoCh20G002150 vs. NCBI nr
Match: gi|703151773|ref|XP_010110208.1| (E3 ubiquitin-protein ligase [Morus notabilis])

HSP 1 Score: 252.7 bits (644), Expect = 6.0e-64
Identity = 130/223 (58.30%), Postives = 156/223 (69.96%), Query Frame = 1


Query: 9   EADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRCPV 68
           + D   S GF+CNICLD+V DPVVTLCGHLFCWPCIYKW+H++S   +QQ QQ    CPV
Sbjct: 33  DGDNNPSTGFDCNICLDTVHDPVVTLCGHLFCWPCIYKWLHFQSTQEEQQQQQ----CPV 92

Query: 69  CKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPA---SPSAQLH 128
           CKAEVS A+LVPLYG+ QTT PSK K P NLG  IP+RPLGP  G + P+   SP     
Sbjct: 93  CKAEVSQASLVPLYGRGQTTKPSKGKAP-NLGIVIPKRPLGPFYGVDSPSVLTSPHMSQQ 152

Query: 129 HHNY-------SQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTSNLYTY 188
            + Y       S     +  S MLS S + TN+  P IG+FG+ +Y R FGN+ +NLYTY
Sbjct: 153 FYRYPHQSQLNSSRRGSHAPSPMLSPSGVATNLFDPTIGIFGEMIYARVFGNSITNLYTY 212

Query: 189 PNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           PNSY  V N+S R+RRH+MQAD+SL R+CFFLFCC VLCLLLF
Sbjct: 213 PNSYNLVGNASPRVRRHVMQADKSLGRVCFFLFCCSVLCLLLF 250

[Close]

BLAST of CmoCh20G002150 vs. NCBI nr
Match: gi|590690709|ref|XP_007043582.1| (RING membrane-anchor 1, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 251.1 bits (640), Expect = 1.8e-63
Identity = 125/222 (56.31%), Postives = 160/222 (72.07%), Query Frame = 1


Query: 7   VPEADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRC 66
           V ++D+  S GF+CNICLDSVQDPVVTLCGHL+CWPCIYKW+H++++S++ Q +Q++ +C
Sbjct: 34  VTDSDDNPSGGFDCNICLDSVQDPVVTLCGHLYCWPCIYKWLHFQTISTENQ-EQKQQQC 93

Query: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQLHH 126
           PVCKAEVSH TLVPLYG+  TT  S+ K P      IP+RPL P       +  + QLHH
Sbjct: 94  PVCKAEVSHTTLVPLYGRGLTTKASRGKTP-QFDVVIPKRPLAPTPNTTNSSQFAQQLHH 153

Query: 127 HNYS-------QSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTSNLYTYP 186
             YS         H  Y AS +LS   +T N++ PV  MFG+ VYTR FGN+ +NLYTYP
Sbjct: 154 RGYSYQPQMSYPQHGSYPASPLLSPGGMTINVLDPVTRMFGEMVYTRVFGNSITNLYTYP 213

Query: 187 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222
           NSY    ++S R+RRH+MQAD+SLSRI FFLFCC++LCLLLF
Sbjct: 214 NSYNLAGSTSPRIRRHVMQADKSLSRISFFLFCCIILCLLLF 253

The following BLAST results are available for this feature:

BLAST of CmoCh20G002150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RMA1_CAPAN	4.6e-56	51.10	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1	[more]
RMA1_ARATH	1.6e-45	46.82	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1 PE=1 SV=1	[more]
RMA3_ARATH	3.4e-35	40.34	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1	[more]
RMA2_ARATH	6.1e-32	41.63	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2 PE=1 SV=1	[more]
RNF5_MOUSE	1.0e-15	37.39	E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1	[more]

BLAST of CmoCh20G002150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB39_CUCSA	6.2e-92	75.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128040 PE=4 SV=1	[more]
W9STC6_9ROSA	4.2e-64	58.30	E3 ubiquitin-protein ligase OS=Morus notabilis GN=L484_009813 PE=4 SV=1	[more]
A0A061EAU9_THECC	1.2e-63	56.31	RING membrane-anchor 1, putative isoform 1 OS=Theobroma cacao GN=TCM_008094 PE=4...	[more]
B9N2C6_POPTR	2.7e-63	56.77	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s13210g PE=4 SV=1	[more]
F6H5B3_VITVI	1.8e-62	55.60	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03860 PE=4 SV=...	[more]

BLAST of CmoCh20G002150 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03510.1	9.3e-47	46.82	RING membrane-anchor 1	[more]
AT4G27470.1	1.9e-36	40.34	RING membrane-anchor 3	[more]
AT4G28270.1	3.4e-33	41.63	RING membrane-anchor 2	[more]
AT1G74990.1	3.2e-23	43.55	RING/U-box superfamily protein	[more]
AT1G19310.1	5.5e-23	39.02	RING/U-box superfamily protein	[more]

BLAST of CmoCh20G002150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094879\|ref\|XP_008448288.1\|	4.0e-92	76.34	PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo]	[more]
gi\|449444358\|ref\|XP_004139942.1\|	8.9e-92	75.88	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus]	[more]
gi\|1009128748\|ref\|XP_015881403.1\|	3.8e-66	60.81	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Ziziphus jujuba]	[more]
gi\|703151773\|ref\|XP_010110208.1\|	6.0e-64	58.30	E3 ubiquitin-protein ligase [Morus notabilis]	[more]
gi\|590690709\|ref\|XP_007043582.1\|	1.8e-63	56.31	RING membrane-anchor 1, putative isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR027370	Znf-RING_LisH

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G002150.1	CmoCh20G002150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 20..69 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 20..70 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 11..81 score: 4.7
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 35..44 scor
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 20..67 score: 1.
None	No IPR available	PANTHER	PTHR12313	RNF5	coord: 9..221 score: 1.9
None	No IPR available	PANTHER	PTHR12313:SF5	SUBFAMILY NOT NAMED	coord: 9..221 score: 1.9
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 14..82 score: 1.77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh20G002150	Cucsa.119060	Cucumber (Gy14) v1	cgycmoB0299
CmoCh20G002150	CmaCh11G018740	Cucurbita maxima (Rimu)	cmacmoB150
CmoCh20G002150	CmaCh19G009850	Cucurbita maxima (Rimu)	cmacmoB514
CmoCh20G002150	CmaCh20G001960	Cucurbita maxima (Rimu)	cmacmoB550
CmoCh20G002150	Cla013565	Watermelon (97103) v1	cmowmB513
CmoCh20G002150	Csa6G128040	Cucumber (Chinese Long) v2	cmocuB558
CmoCh20G002150	MELO3C013615	Melon (DHL92) v3.5.1	cmomeB487
CmoCh20G002150	ClCG02G017600	Watermelon (Charleston Gray)	cmowcgB479
CmoCh20G002150	Lsi10G008930	Bottle gourd (USVL1VR-Ls)	cmolsiB485
CmoCh20G002150	Cp4.1LG15g08030	Cucurbita pepo (Zucchini)	cmocpeB512
CmoCh20G002150	Cp4.1LG16g07810	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G002150	Cp4.1LG04g03050	Cucurbita pepo (Zucchini)	cmocpeB524
CmoCh20G002150	MELO3C013615.2	Melon (DHL92) v3.6.1	cmomedB564
CmoCh20G002150	Cla97C02G043360	Watermelon (97103) v2	cmowmbB545
CmoCh20G002150	Bhi10G000869	Wax gourd	cmowgoB0686
CmoCh20G002150	CsGy6G010600	Cucumber (Gy14) v2	cgybcmoB783
CmoCh20G002150	Carg18451	Silver-seed gourd	carcmoB0559

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh20G002150	CmoCh11G019510	Cucurbita moschata (Rifu)	cmocmoB114
CmoCh20G002150	CmoCh19G010200	Cucurbita moschata (Rifu)	cmocmoB380

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G002150	Cucurbita maxima (Rimu)	cmacmoB613
CmoCh20G002150	Wild cucumber (PI 183967)	cmocpiB563
CmoCh20G002150	Cucurbita pepo (Zucchini)	cmocpeB527
CmoCh20G002150	Silver-seed gourd	carcmoB0042
CmoCh20G002150	Cucumber (Chinese Long) v3	cmocucB0664
CmoCh20G002150	Cucurbita moschata (Rifu)	cmocmoB411