CsaV3_6G012970 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G012970
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	E3 ubiquitin-protein ligase RMA1H1
Location	chr6 : 9069690 .. 9072907 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATCCCAAGCATTAATTTATTTTTATTTTTTATACACAAGTAATTTGGTTTATACCTTCTCTCTAAATATTTGGAGTAAAAGAAGATAAAATCTCACCAAACTCATAAATATTTTTTCTAATGAAACAATTATAAAATTTTGTTGGTAACAATGCCTTTTGTATTCGTAATAGAAATTAGTTTTTTTTGTTTTCTTTAATAAATACGAGTAGAAAAAAAGGAAAGGGAGGAAAAGGAAAGGCGATTGAAGAGAAACCAGAGCTTTAAAAGAGAGCAATGTTTTTGTCCTTTACTTCTTTGCTTTAAGCTCAGACGCCGCATCGTCATCGTCCCATCGTCTCTTCTATATCCATTCTTTTTCCCATTTCTATTGAATTTCAGATTCCTTCGCTCTTCTCGCTTTTTATATAAACTCCCTCTCAACCCTCCACCCTCCACATCGCCCTCTTCAAATTCATATTCCTTCTTCTTCCTCCTCCTCTCTCAACCAACCTTTTTAACTCTCACGCAGATACTAATCCGCCGATTAAATTTTGGTACGTTTCTGTTCCCCCCCTTCTGTATGACTCTTAGATGGGACTGTGTTTCTCAGTGGATTAAGCTTTAGATCTGTTTGCCAATGTATATGGGTATTTTTTTTCGTTTAGGTTTCTTCCTTTCGAGACCTCTGATGGAGATGGGGTTCTTTGTTTTTGGTTTTTGAGTTTTTTTTTTTTTTTTTTTTTTGATATCGCTTCGAACTCCATCCCCTTTTTTTGTGGATGACTTTTGGGTTTCTTTGTTTTCTGAAACGGTTTCATGTGTTGTGCAGGCGGAAAACTTTCATGCTCTGTTTTTGCTCTGTTTTTTAGAGATGTTTTATGTGGTGTGAGGGTGGGGGTGGATTCTTTCGATTGTTTTATTTTTTCCAAAGATTAATACGCCAATAGAACTTTAGTCAAGTGGTGAGTTACGAAAATCTTGTGTTCTTGTTGGGTCTTTTGAATAGAAAGTTCACTTGGATTTTCCACCTCTTTGGAAAATGGAAGAGTAGTTATGTGGAGTTCTGATTTCGATTGCAACTTGGGTTTTGATTCACCTGTATATTGTTTTTGGTTATTAATTGTTGGGTTTGTGATTTTTCTTCATTTTGGAAAATTCTTAGTTATGTATTTATGCCGTTCTGGTTTCTTCTATGCATGATTATGCCTCTCGGATCTGTTTTTCAAGTAACTGATCCGAATTTATGTGTGTGCCTAAAGATTGATAGTTCTTTTCACTTTTCACCTGCACTGAGTCCATCTGCTTCAAAAGATGGCTTATGAATGCAGAAGATTCTGAATCTTTACCACGTTATGCAAGAAATTGGAACTTCTAACAATTTTATTAGGATAACGTAATCTAGGGAAGTTCTTGGATGGATTGTGTCTGTGAGAGTCATAACGAATCTCCATCATTTGAATTTCTTATTGATTAAATAAATTGAATCTGGGTCTGTCAAGATCAGCATGTTTTGATATTTATGGGAACTTCAGAAATCCTTGACACCATTCTCCACTTGGGGGTTTCGTGATAGAATTTTCAAGAGAGGCGACCATTCAGAATAGAATAATCTATAAGCTTACCCATGTTCGTGTCAGTTCTGGGACCCAATTAATATTATATTCGAAGCAGTGGATTAGGATGATTTGTTTTGCCGTTTCATCAGTTATCTTATCACTGCAATGAATGGGATGCTTTTGGTTTATTAATGAATTCCTAGTAAATCGTGCCTTTATAGCTTCTTGTCCGAATTGTTGATTCTTTTGTCTGCTTTTTTGCATCCTTGTATTTACAAACAGCAGCCTTTTACTGTGAATTTCTCTTAGACTTTAGTTCTGAGTTCTGACCTTGTTTCTTGGATATGTTTATCAGCTTGAGGCATTATAGAAAGTAGACTGTGCTGAAACATAAACCTGGCCATGGAACAGGAGTACCTTGAAGAGACTTTGATGCAAAACGACAATTCATTAGGAGGAGACAGATTATGTTTAGACAACCAAATATATATTTCAGATGCTGAAGATGAAGCTTCCCATGGCTTTGACTGCAACATATGCCTAGACTCGGTTCAAGATCCTGTTGTAACCCTTTGTGGTCATCTCTTCTGTTGGCCCTGCATTTATAAATGGCTTCACTGCAAGAAATTATCTGCACAACGATGCCAACAAGTGGAATGCCGATGTCCTGTTTGCAAGGCCAAAGTCTCCCGTGCTACTCTCGTCCCAATCTACGGAAAATTTCAAACTACAGATGCCTCAAAAGCTGAAGCACCTCCAAATCTTGGCCCAGCCATCCCACGCAGGCCGCTTGGGCGGCATGCTTGTGAGGCAGAGACACCAGCATCTCCAACCCCCCAACTTCATTCCGACAACTATTCTCCTCAGTCACACTCGTACTACGCACAAACACAAAACGAATACATCGCTTCGTCAATGCTTAGCTCAAGCAGTATCACAACAAACATTATCCATCCAGTGATCGGAATGTTTGGTGACACGATTTACGCAAGAACGTTTGGAAACACAACAACGAACCTGTACACTTATCCAAATTCATATGGTAATGTGAACAACAGTAGTGTAAGACTGAGGAGGCACATAATGCAGGCTGATGAGTCACTGAGCAGAATCTGTTTTTTCTTTTTTTGCTGCTTAGTAATATGTCTTCTTTTATTCTAAGAAGCTCCCTTTAGACCATTTCTAGGCATTGGATGTAGATATATACACATAGCATGTAACTATGAGCTTAGTGTAAAAAAGGGCTACAAAATTTCCTTCAATCTGTTTCAAGGAATTGGTGGATGTATAATGAAAATTATTTTATGTGGGAATCCCATTATCACAAAAAGTTAATTAGATGAGCAATAACGTAGGAATCTCCTAATAAGTGATCCACGAAAAGGAATGAAGATAGGGAAAGTTTGCATAATCTTTTTCTTTTCTTTATTTGTCTGGTTGATTAAAAAAATTACTAAAATCCAATTTTGTGGTTATCCAAACTTGATTCATTTCAATATAAAATTAGGTGAATGGAAGAGGGCATCTTCATGCACCCAAACAAGTCTTTCTCCAAAGGAACAAATTTCTTCCGTGAATGGCACGACTTCAATAAATAAGCAACCCGTAATGTTTGCATTAGTACTTGAATAGATCGAACTGACTCGAATCCAAGTGAGCCTATTTGTTTGTTTGTTT

mRNA sequence

ATGGAACAGGAGTACCTTGAAGAGACTTTGATGCAAAACGACAATTCATTAGGAGGAGACAGATTATGTTTAGACAACCAAATATATATTTCAGATGCTGAAGATGAAGCTTCCCATGGCTTTGACTGCAACATATGCCTAGACTCGGTTCAAGATCCTGTTGTAACCCTTTGTGGTCATCTCTTCTGTTGGCCCTGCATTTATAAATGGCTTCACTGCAAGAAATTATCTGCACAACGATGCCAACAAGTGGAATGCCGATGTCCTGTTTGCAAGGCCAAAGTCTCCCGTGCTACTCTCGTCCCAATCTACGGAAAATTTCAAACTACAGATGCCTCAAAAGCTGAAGCACCTCCAAATCTTGGCCCAGCCATCCCACGCAGGCCGCTTGGGCGGCATGCTTGTGAGGCAGAGACACCAGCATCTCCAACCCCCCAACTTCATTCCGACAACTATTCTCCTCAGTCACACTCGTACTACGCACAAACACAAAACGAATACATCGCTTCGTCAATGCTTAGCTCAAGCAGTATCACAACAAACATTATCCATCCAGTGATCGGAATGTTTGGTGACACGATTTACGCAAGAACGTTTGGAAACACAACAACGAACCTGTACACTTATCCAAATTCATATGGTAATGTGAACAACAGTAGTGTAAGACTGAGGAGGCACATAATGCAGGCTGATGAGTCACTGAGCAGAATCTGTTTTTTCTTTTTTTGCTGCTTAGTAATATGTCTTCTTTTATTCTAA

Coding sequence (CDS)

ATGGAACAGGAGTACCTTGAAGAGACTTTGATGCAAAACGACAATTCATTAGGAGGAGACAGATTATGTTTAGACAACCAAATATATATTTCAGATGCTGAAGATGAAGCTTCCCATGGCTTTGACTGCAACATATGCCTAGACTCGGTTCAAGATCCTGTTGTAACCCTTTGTGGTCATCTCTTCTGTTGGCCCTGCATTTATAAATGGCTTCACTGCAAGAAATTATCTGCACAACGATGCCAACAAGTGGAATGCCGATGTCCTGTTTGCAAGGCCAAAGTCTCCCGTGCTACTCTCGTCCCAATCTACGGAAAATTTCAAACTACAGATGCCTCAAAAGCTGAAGCACCTCCAAATCTTGGCCCAGCCATCCCACGCAGGCCGCTTGGGCGGCATGCTTGTGAGGCAGAGACACCAGCATCTCCAACCCCCCAACTTCATTCCGACAACTATTCTCCTCAGTCACACTCGTACTACGCACAAACACAAAACGAATACATCGCTTCGTCAATGCTTAGCTCAAGCAGTATCACAACAAACATTATCCATCCAGTGATCGGAATGTTTGGTGACACGATTTACGCAAGAACGTTTGGAAACACAACAACGAACCTGTACACTTATCCAAATTCATATGGTAATGTGAACAACAGTAGTGTAAGACTGAGGAGGCACATAATGCAGGCTGATGAGTCACTGAGCAGAATCTGTTTTTTCTTTTTTTGCTGCTTAGTAATATGTCTTCTTTTATTCTAA

Protein sequence

MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF

Homology

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BLAST of CsaV3_6G012970 vs. NCBI nr
Match: XP_004139942.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >KGN46743.1 hypothetical protein Csa_6G128040 [Cucumis sativus])

HSP 1 Score: 496.5 bits (1277), Expect = 5.3e-137
Identity = 251/252 (99.60%), Postives = 251/252 (99.60%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120
           LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN
Sbjct: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120

Query: 121 LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180
           LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT
Sbjct: 121 LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180

Query: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFX 240
           NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFX
Sbjct: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFX 240

Query: 241 XXXXXXXXLLLF 253
           XXXXXXX LLLF
Sbjct: 241 XXXXXXXCLLLF 252

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BLAST of CsaV3_6G012970 vs. NCBI nr
Match: XP_008448288.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_008448289.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_016900554.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo])

HSP 1 Score: 456.8 bits (1174), Expect = 4.7e-125
Identity = 232/252 (92.06%), Postives = 241/252 (95.63%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQ+YLEE LM NDNSLGGD+L LD Q YISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120
           LFCWPCIYKWLH KKLSAQ+CQQVECRCPVCKAKVSRATL+PIYGKFQTTDASKA+APPN
Sbjct: 61  LFCWPCIYKWLHSKKLSAQQCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPPN 120

Query: 121 LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180
           LGPAIPRRPLG HACEAETPASPTPQLHS NYSPQSHSYY+QTQNEYI+SSMLSSSSITT
Sbjct: 121 LGPAIPRRPLGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEYISSSMLSSSSITT 180

Query: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFX 240
           NIIHPVIGMFGDTIY RT GNTTTNLY+YPNSYGNV+NSSVRLRRHIMQADESLSRICFX
Sbjct: 181 NIIHPVIGMFGDTIYPRTLGNTTTNLYSYPNSYGNVSNSSVRLRRHIMQADESLSRICFX 240

Query: 241 XXXXXXXXLLLF 253
           XXXXXXX LLLF
Sbjct: 241 XXXXXXXCLLLF 252

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BLAST of CsaV3_6G012970 vs. NCBI nr
Match: XP_022140292.1 (E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022140293.1 E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia])

HSP 1 Score: 343.6 bits (880), Expect = 5.8e-91
Identity = 174/241 (72.20%), Postives = 200/241 (82.99%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQ+YLEET+M++ NS G D+ CLDNQ  +SDA+  ASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEETVMRS-NSFGEDKFCLDNQTCVSDADGGASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSA-QRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPP 120
           LFCWPCIYKWLH K LSA Q+CQ  E  CPVCKA+VS A+LVP+YG+FQTT+ S+ +A  
Sbjct: 61  LFCWPCIYKWLHYKNLSAQQQCQPQENCCPVCKAEVSHASLVPLYGRFQTTNPSETKA-S 120

Query: 121 NLGPAIPRRPLGRHACEAETPASPTPQLHSDN-YSPQSHSYYAQTQNEYIASSMLSSSSI 180
            LGPAIPRRPLG     AE PASP+PQLH  N Y P +HSY+ +T  +YI SSML SSSI
Sbjct: 121 QLGPAIPRRPLGPACGAAEAPASPSPQLHPHNYYLPHAHSYHPRTTQDYITSSMLGSSSI 180

Query: 181 TTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRIC 240
           TTNIIHPVIG FG+ IYAR FGNTTT+L+TYPNSYG+V+NSS RLRRH+MQADESLSRIC
Sbjct: 181 TTNIIHPVIGTFGEAIYARAFGNTTTSLHTYPNSYGHVSNSSARLRRHMMQADESLSRIC 239

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BLAST of CsaV3_6G012970 vs. NCBI nr
Match: XP_023513341.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302.4 bits (773), Expect = 1.5e-78
Identity = 158/228 (69.30%), Postives = 176/228 (77.19%), Query Frame = 0


Query: 27  QIY-ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSA-QRCQQV 86
           Q+Y + DA++  SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+H K LS+ Q+C   
Sbjct: 3   QLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCXXX 62

Query: 87  ECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPT 146
                    +VS ATLVP+YGKFQTT  SK + P NLGPAIPRRPLG  AC AE PASP+
Sbjct: 63  XXXXXXXXXEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLG-PACGAEPPASPS 122

Query: 147 PQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTT 206
            QLH  NYS        Q+ ++YIASSMLSSSSITTNIIHPVIGMFGD +Y RTFGNTTT
Sbjct: 123 AQLHHHNYS--------QSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTT 182

Query: 207 NLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFXXXXXXXXXLLLF 253
           NLYTYPNSYG+V+NSSVRLRRHIMQADESLSRICF         LLLF
Sbjct: 183 NLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 221

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BLAST of CsaV3_6G012970 vs. NCBI nr
Match: XP_022986029.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022986030.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022986031.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima])

HSP 1 Score: 301.6 bits (771), Expect = 2.5e-78
Identity = 155/215 (72.09%), Postives = 172/215 (80.00%), Query Frame = 0


Query: 27  QIY-ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSA-QRCQQV 86
           Q+Y + DA++  SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+H K LS+ Q+C   
Sbjct: 3   QLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCXXX 62

Query: 87  ECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPT 146
                    +VS ATLVP+YGKFQTT  SK + P NLGPAIPRRPLG  AC AE PASP+
Sbjct: 63  XXXXXXXXXEVSHATLVPLYGKFQTTAPSKTKPPSNLGPAIPRRPLG-PACGAEPPASPS 122

Query: 147 PQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTT 206
            QLH  NYS        Q+ N+YIASSMLSSSSITTNIIHPVIGMFGD +Y RTFGNTTT
Sbjct: 123 SQLHHHNYS--------QSHNDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTT 182

Query: 207 NLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICF 240
           NLYTYPNSYG+V+NSSVRLRRHIMQADESLSRICF
Sbjct: 183 NLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICF 208

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BLAST of CsaV3_6G012970 vs. TAIR10
Match: AT4G03510.1 (RING membrane-anchor 1)

HSP 1 Score: 152.5 bits (384), Expect = 3.4e-37
Identity = 85/206 (41.26%), Postives = 123/206 (59.71%), Query Frame = 0


Query: 33  AEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCK 92
           ++D     FDCNICLDSVQ+PVVTLCGHLFCWPCI+KWL  +  S     Q   +CPVCK
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCK 97

Query: 93  AKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPTPQLHSDNY 152
           +KVS +TLVP+YG+ + T   + +       ++P+RP+G      E P S  P   +D  
Sbjct: 98  SKVSHSTLVPLYGRGRCTTQEEGK------NSVPKRPVG-PVYRLEMPNS--PYASTDLR 157

Query: 153 SPQSHSYYAQTQNEYIASSMLSSSSIT-TNIIHPVIGMFGDTIYARTFGNTTTNLYTYPN 212
             Q   + +  +  Y  S ++SS+S++ + ++ PV+ M G+ +  R FG    + + YP+
Sbjct: 158 LSQRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPD 217

Query: 213 SYGNVNNSSVRLRRHIMQADESLSRI 238
           +Y     S  R+RR IMQAD+SL RI
Sbjct: 218 TYNLAGTSGPRMRRRIMQADKSLGRI 234

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BLAST of CsaV3_6G012970 vs. TAIR10
Match: AT4G27470.1 (RING membrane-anchor 3)

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-31
Identity = 82/215 (38.14%), Postives = 114/215 (53.02%), Query Frame = 0


Query: 41  FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATL 100
           FDCNICLD+  DPVVTLCGHLFCWPCIYKWLH  +LS+    Q +  CPVCK+ ++  +L
Sbjct: 42  FDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHV-QLSSVSVDQHQNNCPVCKSNITITSL 101

Query: 101 VPIYGKFQTTDASK--AEAPPNLGPAIPRRPLGRHACEAETPASP-TPQLHSDNYSPQSH 160
           VP+YG+  ++ +S   ++    L   IPRRP         T AS   P L     S   H
Sbjct: 102 VPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQHQTLSXSFH 161

Query: 161 SYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVN 220
           ++    +      S   ++++  + ++PVIGMFGD +Y R FG T TN    P       
Sbjct: 162 NHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFG-TFTNTIAQPYQ----- 221

Query: 221 NSSVRLRRHIMQADESLSRICFXXXXXXXXXLLLF 253
                  + +MQ ++SL+R+           LLLF
Sbjct: 222 ------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

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BLAST of CsaV3_6G012970 vs. TAIR10
Match: AT4G28270.1 (RING membrane-anchor 2)

HSP 1 Score: 125.9 bits (315), Expect = 3.4e-29
Identity = 81/218 (37.16%), Postives = 106/218 (48.62%), Query Frame = 0


Query: 41  FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVE-----CRCPVCKAKV 100
           FDCNICLD V+DPVVTLCGHLFCWPCI+KW +    S QR  Q +      +CPVCK+ V
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78

Query: 101 SRATLVPIYGKFQTTDASKAEAPPN-LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSP 160
           S ATLVPIYG+ Q    S +  P    GP    R +G+   E E+               
Sbjct: 79  SEATLVPIYGRGQKAPQSGSNVPSRPTGPVYDLRGVGQRLGEGES--------------- 138

Query: 161 QSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYG 220
           Q + Y                      +  PV+G+  + +Y R FG +++N+  Y     
Sbjct: 139 QRYMY---------------------RMPDPVMGVVCEMVYRRLFGESSSNMAPY----- 193

Query: 221 NVNNSSVRLRRHIMQADESLSRICFXXXXXXXXXLLLF 253
              + +VR RR  MQA+ESLSR+           L LF
Sbjct: 199 --RDMNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

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BLAST of CsaV3_6G012970 vs. TAIR10
Match: AT1G19310.1 (RING/U-box superfamily protein)

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-23
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 31  SDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPV 90
           +D  +  S  F+CNICLD  QDP+VTLCGHLFCWPC+YKWLH    S          CPV
Sbjct: 11  NDTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKD--------CPV 70

Query: 91  CKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETP 141
           CKA +    LVP+YG+ +++   ++++ P L   +P RP G+    A+ P
Sbjct: 71  CKAVIEEDRLVPLYGRGKSSADPRSKSIPGL--EVPNRPSGQRPETAQPP 110

[Close]

BLAST of CsaV3_6G012970 vs. TAIR10
Match: AT1G74990.1 (RING/U-box superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-22
Identity = 56/132 (42.42%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 30  ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCP 89
           I++ ED+AS+ F CNICL+  ++P+VTLCGHLFCWPC+YKWLH    S          CP
Sbjct: 6   ITNEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSN--------HCP 65

Query: 90  VCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPTPQLHS 149
           VCKA V   TLVP+YG  + +   +++   N G  +P RP    A   ET      Q H 
Sbjct: 66  VCKALVKEDTLVPLYGMGKPSSDPRSKL--NSGVTVPNRPA---ATRTETARPRLEQRHH 124

Query: 150 DNYSPQSHSYYA 162
            +     HS +A
Sbjct: 126 GSSFFGGHSSFA 124

[Close]

BLAST of CsaV3_6G012970 vs. Swiss-Prot
Match: sp|Q6R567|RMA1_CAPAN (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.5e-50
Identity = 112/257 (43.58%), Postives = 153/257 (59.53%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           M  E L+ T  ++D  LG  +   D      + E+  S GFDCNICLD V +PV+TLCGH
Sbjct: 5   MALEQLDTTFNKHDTPLGKWKSMND------EVEENISGGFDCNICLDCVHEPVITLCGH 64

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGK-FQTTDASKAEAPP 120
           L+CWPCIYKW++ + +S++   Q + +CPVCKA+VS  TL+P+YG+  Q+T  S+ +A P
Sbjct: 65  LYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKA-P 124

Query: 121 NLGPAIPRRP----LGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSS 180
           NLG  IP+RP     G H     T ++P+  L    Y  QS +     Q  Y++S MLS 
Sbjct: 125 NLGIVIPQRPPSPRCGGHFLLPTTDSNPSQLLQRRGYQQQSQTRQPAYQGSYMSSPMLSP 184

Query: 181 SSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLS 240
              T N++     M G+  YAR FGN++T +YTYPNSY    +SS R+RR + QAD SL 
Sbjct: 185 GGATANMLQH--SMIGEVAYARIFGNSSTTMYTYPNSYNLAISSSPRMRRQLSQADRSLG 244

Query: 241 RICFXXXXXXXXXLLLF 253
           RICF         L+LF
Sbjct: 245 RICFFLFCCFVTCLILF 252

[Close]

BLAST of CsaV3_6G012970 vs. Swiss-Prot
Match: sp|O64425|RMA1_ARATH (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.2e-36
Identity = 85/206 (41.26%), Postives = 123/206 (59.71%), Query Frame = 0


Query: 33  AEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCK 92
           ++D     FDCNICLDSVQ+PVVTLCGHLFCWPCI+KWL  +  S     Q   +CPVCK
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCK 97

Query: 93  AKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPTPQLHSDNY 152
           +KVS +TLVP+YG+ + T   + +       ++P+RP+G      E P S  P   +D  
Sbjct: 98  SKVSHSTLVPLYGRGRCTTQEEGK------NSVPKRPVG-PVYRLEMPNS--PYASTDLR 157

Query: 153 SPQSHSYYAQTQNEYIASSMLSSSSIT-TNIIHPVIGMFGDTIYARTFGNTTTNLYTYPN 212
             Q   + +  +  Y  S ++SS+S++ + ++ PV+ M G+ +  R FG    + + YP+
Sbjct: 158 LSQRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPD 217

Query: 213 SYGNVNNSSVRLRRHIMQADESLSRI 238
           +Y     S  R+RR IMQAD+SL RI
Sbjct: 218 TYNLAGTSGPRMRRRIMQADKSLGRI 234

[Close]

BLAST of CsaV3_6G012970 vs. Swiss-Prot
Match: sp|Q8GUK7|RMA3_ARATH (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.6e-30
Identity = 82/215 (38.14%), Postives = 114/215 (53.02%), Query Frame = 0


Query: 41  FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATL 100
           FDCNICLD+  DPVVTLCGHLFCWPCIYKWLH  +LS+    Q +  CPVCK+ ++  +L
Sbjct: 42  FDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHV-QLSSVSVDQHQNNCPVCKSNITITSL 101

Query: 101 VPIYGKFQTTDASK--AEAPPNLGPAIPRRPLGRHACEAETPASP-TPQLHSDNYSPQSH 160
           VP+YG+  ++ +S   ++    L   IPRRP         T AS   P L     S   H
Sbjct: 102 VPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQHQTLSXSFH 161

Query: 161 SYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVN 220
           ++    +      S   ++++  + ++PVIGMFGD +Y R FG T TN    P       
Sbjct: 162 NHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFG-TFTNTIAQPYQ----- 221

Query: 221 NSSVRLRRHIMQADESLSRICFXXXXXXXXXLLLF 253
                  + +MQ ++SL+R+           LLLF
Sbjct: 222 ------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of CsaV3_6G012970 vs. Swiss-Prot
Match: sp|P93030|RMA2_ARATH (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.2e-28
Identity = 81/218 (37.16%), Postives = 106/218 (48.62%), Query Frame = 0


Query: 41  FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVE-----CRCPVCKAKV 100
           FDCNICLD V+DPVVTLCGHLFCWPCI+KW +    S QR  Q +      +CPVCK+ V
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78

Query: 101 SRATLVPIYGKFQTTDASKAEAPPN-LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSP 160
           S ATLVPIYG+ Q    S +  P    GP    R +G+   E E+               
Sbjct: 79  SEATLVPIYGRGQKAPQSGSNVPSRPTGPVYDLRGVGQRLGEGES--------------- 138

Query: 161 QSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYG 220
           Q + Y                      +  PV+G+  + +Y R FG +++N+  Y     
Sbjct: 139 QRYMY---------------------RMPDPVMGVVCEMVYRRLFGESSSNMAPY----- 193

Query: 221 NVNNSSVRLRRHIMQADESLSRICFXXXXXXXXXLLLF 253
              + +VR RR  MQA+ESLSR+           L LF
Sbjct: 199 --RDMNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of CsaV3_6G012970 vs. Swiss-Prot
Match: sp|Q96GF1|RN185_HUMAN (E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.7e-15
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 41  FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATL 100
           F+CNICLD+ +D V++LCGHLFCWPC+++WL  +       +QV   CPVCKA +SR  +
Sbjct: 37  FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRP-----NRQV---CPVCKAGISRDKV 96

Query: 101 VPIYGKFQTTDASKAEAPP 120
           +P+YG+  T      E  P
Sbjct: 97  IPLYGRGSTGQQDPREKTP 107

[Close]

BLAST of CsaV3_6G012970 vs. TrEMBL
Match: tr|A0A0A0KB39|A0A0A0KB39_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G128040 PE=4 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 3.5e-137
Identity = 251/252 (99.60%), Postives = 251/252 (99.60%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120
           LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN
Sbjct: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120

Query: 121 LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180
           LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT
Sbjct: 121 LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180

Query: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFX 240
           NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFX
Sbjct: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFX 240

Query: 241 XXXXXXXXLLLF 253
           XXXXXXX LLLF
Sbjct: 241 XXXXXXXCLLLF 252

[Close]

BLAST of CsaV3_6G012970 vs. TrEMBL
Match: tr|A0A1S3BJB6|A0A1S3BJB6_CUCME (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103490524 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 3.1e-125
Identity = 232/252 (92.06%), Postives = 241/252 (95.63%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQ+YLEE LM NDNSLGGD+L LD Q YISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120
           LFCWPCIYKWLH KKLSAQ+CQQVECRCPVCKAKVSRATL+PIYGKFQTTDASKA+APPN
Sbjct: 61  LFCWPCIYKWLHSKKLSAQQCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPPN 120

Query: 121 LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180
           LGPAIPRRPLG HACEAETPASPTPQLHS NYSPQSHSYY+QTQNEYI+SSMLSSSSITT
Sbjct: 121 LGPAIPRRPLGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEYISSSMLSSSSITT 180

Query: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFX 240
           NIIHPVIGMFGDTIY RT GNTTTNLY+YPNSYGNV+NSSVRLRRHIMQADESLSRICFX
Sbjct: 181 NIIHPVIGMFGDTIYPRTLGNTTTNLYSYPNSYGNVSNSSVRLRRHIMQADESLSRICFX 240

Query: 241 XXXXXXXXLLLF 253
           XXXXXXX LLLF
Sbjct: 241 XXXXXXXCLLLF 252

[Close]

BLAST of CsaV3_6G012970 vs. TrEMBL
Match: tr|A0A2C9URY8|A0A2C9URY8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G147200 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.4e-61
Identity = 133/253 (52.57%), Postives = 175/253 (69.17%), Query Frame = 0


Query: 3   QEYLEETL----MQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLC 62
           ++Y+EE++    ++ D S        DN   + D++D   +GFDCNICLDSVQDPVVTLC
Sbjct: 4   EQYIEESVENDYIREDKSPLNTCKSSDN---VGDSDDSPCNGFDCNICLDSVQDPVVTLC 63

Query: 63  GHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAP 122
           GHL+CWPCIYKWLH + +SA+   Q++ +CPVCKA+VS  TLVP++G+ Q T  SK++A 
Sbjct: 64  GHLYCWPCIYKWLHFQNISAENDMQIQQQCPVCKAEVSEGTLVPLFGRGQPTKPSKSKA- 123

Query: 123 PNLGPAIPRRPLGRHACEAETPASP----------TPQLHSDNYSPQ-SHSYYAQTQN-E 182
           PNLG  IPRRPLG  AC  ++P SP          T Q+++ +YSP  S  YY+Q     
Sbjct: 124 PNLGIIIPRRPLGL-ACGFDSPRSPSTPSSVRSRATQQIYNGDYSPHPSQLYYSQPGGMS 183

Query: 183 YIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRH 240
           Y ASSML+    TTN+  P+IGMFG+ IYAR FGN+ TN+Y+YPNSY    ++S R+RRH
Sbjct: 184 YPASSMLTPRVATTNMYDPMIGMFGEMIYARVFGNSITNIYSYPNSYNLAGSTSPRMRRH 243

[Close]

BLAST of CsaV3_6G012970 vs. TrEMBL
Match: tr|A0A2N9F401|A0A2N9F401_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9740 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.5e-60
Identity = 134/258 (51.94%), Postives = 165/258 (63.95%), Query Frame = 0


Query: 3   QEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGHLF 62
           ++Y EET+ QN  SLG D         I D+E+ AS GFDC+ICL+ VQDPVVTLCGHL+
Sbjct: 4   EQYFEETMAQN-GSLGEDN-WKSVADAIPDSENNASGGFDCSICLELVQDPVVTLCGHLY 63

Query: 63  CWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLG 122
           CWPCIYKW+H +  S++     E +CPVCKA++S+++LVP+YGK QTT  SK    P+LG
Sbjct: 64  CWPCIYKWIHFQNASSENEDPQEHKCPVCKAEISQSSLVPLYGKGQTTKHSKGSKAPHLG 123

Query: 123 PAIPRRPLGRHACEAETPAS--------PTPQLHSDNYSPQSHSYYAQTQNEYIASSMLS 182
             IPRRPLG   CE +TP S         T QL   NYS         +   Y  SSML 
Sbjct: 124 IVIPRRPLG-PVCEVDTPRSISTPRSPYQTQQLXXPNYSXXXXXXXPNS-GSYTNSSMLY 183

Query: 183 SSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESL 242
                TN+  P+IG+FG+ +YAR FGNT TNLYTYPNSY    NSS R+RRH+MQAD+SL
Sbjct: 184 PGGTVTNLHDPMIGVFGEMVYARVFGNTMTNLYTYPNSYHLAGNSSPRVRRHVMQADKSL 243

Query: 243 SRICFXXXXXXXXXLLLF 253
           +RICF         LLLF
Sbjct: 244 NRICFFLFCCLVLCLLLF 257

[Close]

BLAST of CsaV3_6G012970 vs. TrEMBL
Match: tr|A0A067JX84|A0A067JX84_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25796 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.9e-58
Identity = 127/247 (51.42%), Postives = 171/247 (69.23%), Query Frame = 0


Query: 3   QEYLEETLMQNDNSLGGD-RLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGHL 62
           Q Y+EE++ +ND+    + +   DN   I+D+ED  S GF+CNICLDSVQ+PVVTLCGHL
Sbjct: 4   QHYIEESIEENDHMREDNWKSTSDN---IADSEDSTSSGFECNICLDSVQEPVVTLCGHL 63

Query: 63  FCWPCIYKWLHCKKLSAQRCQ-QVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 122
           +CWPCIYKWLH + +SA+    + + +CPVCKA+VS  TLVP++G+ QT   SK++A PN
Sbjct: 64  YCWPCIYKWLHFQSISAENEDLEPQQQCPVCKAEVSEGTLVPLFGRGQTAKPSKSKA-PN 123

Query: 123 LGPAIPRRPLGRHACEAETPAS--------PTPQLHSDNYSPQSHSYYAQTQNEYIASSM 182
           LG  IPRRPLG  AC  ++P S        PT Q ++ NY+  S  YY++    Y  S M
Sbjct: 124 LGIIIPRRPLGL-ACGFDSPRSPFMTSSPQPTQQTYNRNYTNHSQVYYSR-PGGYSPSPM 183

Query: 183 LSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADE 240
           ++      N+  PVIGMFG+ IYAR FGN+ TN+Y+YP+SY    ++S R+RRH+MQAD+
Sbjct: 184 INPRVTAANMFDPVIGMFGEMIYARVFGNSVTNIYSYPDSYNLAGSTSPRVRRHVMQADK 243

The following BLAST results are available for this feature:

BLAST of CsaV3_6G012970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139942.1	5.3e-137	99.60	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >KGN46743.1 hypo...	[more]
XP_008448288.1	4.7e-125	92.06	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_008448289.1 PRE...	[more]
XP_022140292.1	5.8e-91	72.20	E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022140293.1 E3...	[more]
XP_023513341.1	1.5e-78	69.30	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022986029.1	2.5e-78	72.09	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022986030.1 E3 ub...	[more]

BLAST of CsaV3_6G012970 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03510.1	3.4e-37	41.26	RING membrane-anchor 1	[more]
AT4G27470.1	3.7e-31	38.14	RING membrane-anchor 3	[more]
AT4G28270.1	3.4e-29	37.16	RING membrane-anchor 2	[more]
AT1G19310.1	3.7e-23	44.55	RING/U-box superfamily protein	[more]
AT1G74990.1	2.4e-22	42.42	RING/U-box superfamily protein	[more]

BLAST of CsaV3_6G012970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6R567\|RMA1_CAPAN	7.5e-50	43.58	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
sp\|O64425\|RMA1_ARATH	6.2e-36	41.26	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
sp\|Q8GUK7\|RMA3_ARATH	6.6e-30	38.14	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
sp\|P93030\|RMA2_ARATH	6.2e-28	37.16	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
sp\|Q96GF1\|RN185_HUMAN	2.7e-15	46.84	E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1	[more]

BLAST of CsaV3_6G012970 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KB39\|A0A0A0KB39_CUCSA	3.5e-137	99.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G128040 PE=4 SV=1	[more]
tr\|A0A1S3BJB6\|A0A1S3BJB6_CUCME	3.1e-125	92.06	E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103490524 PE=4 ...	[more]
tr\|A0A2C9URY8\|A0A2C9URY8_MANES	5.4e-61	52.57	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G147200 PE=4 SV=...	[more]
tr\|A0A2N9F401\|A0A2N9F401_FAGSY	4.5e-60	51.94	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9740 PE=4 SV=1	[more]
tr\|A0A067JX84\|A0A067JX84_JATCU	1.9e-58	51.42	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25796 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017907	Znf_RING_CS
IPR013083	Znf_RING/FYVE/PHD
IPR027370	Znf-RING_LisH
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G012970.1	CsaV3_6G012970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 43..91 e-value: 4.9E-7 score: 39.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 43..92 score: 12.534
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 43..89 e-value: 3.0E-6 score: 27.0
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 26..117 e-value: 1.6E-16 score: 61.8
None	No IPR available	PANTHER	PTHR12313:SF5	E3 UBIQUITIN-PROTEIN LIGASE RMA1-RELATED	coord: 4..252
None	No IPR available	PANTHER	PTHR12313	RNF5	coord: 4..252
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 41..93 e-value: 8.03559E-22 score: 84.6632
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 37..105
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 58..67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G012970	CSPI06G10480	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G012970	CSPI07G04590	Wild cucumber (PI 183967)	cpicucB412
CsaV3_6G012970	Cucsa.147700	Cucumber (Gy14) v1	cgycucB224
CsaV3_6G012970	Cucsa.119060	Cucumber (Gy14) v1	cgycucB159
CsaV3_6G012970	CmaCh11G018740	Cucurbita maxima (Rimu)	cmacucB0168
CsaV3_6G012970	CmaCh20G001960	Cucurbita maxima (Rimu)	cmacucB0681
CsaV3_6G012970	CmoCh11G019510	Cucurbita moschata (Rifu)	cmocucB0152
CsaV3_6G012970	Cp4.1LG16g07810	Cucurbita pepo (Zucchini)	cpecucB0354
CsaV3_6G012970	CsGy6G010600	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G012970	CsGy7G004180	Cucumber (Gy14) v2	cgybcucB346
CsaV3_6G012970	Carg18451	Silver-seed gourd	carcucB0448
CsaV3_6G012970	Carg19119	Silver-seed gourd	carcucB0757
CsaV3_6G012970	Cla013565	Watermelon (97103) v1	cucwmB550
CsaV3_6G012970	MELO3C013615	Melon (DHL92) v3.5.1	cucmeB449
CsaV3_6G012970	MELO3C018740	Melon (DHL92) v3.5.1	cucmeB468
CsaV3_6G012970	ClCG02G017600	Watermelon (Charleston Gray)	cucwcgB472
CsaV3_6G012970	Lsi11G015480	Bottle gourd (USVL1VR-Ls)	cuclsiB457
CsaV3_6G012970	Lsi10G008930	Bottle gourd (USVL1VR-Ls)	cuclsiB445
CsaV3_6G012970	MELO3C018740.2	Melon (DHL92) v3.6.1	cucmedB458
CsaV3_6G012970	MELO3C013615.2	Melon (DHL92) v3.6.1	cucmedB440
CsaV3_6G012970	Cla97C02G043360	Watermelon (97103) v2	cucwmbB461
CsaV3_6G012970	Bhi05G001615	Wax gourd	cucwgoB587
CsaV3_6G012970	Bhi10G000869	Wax gourd	cucwgoB620

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_6G012970	CsaV3_7G004390	Cucumber (Chinese Long) v3	cuccucB218

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G012970	Silver-seed gourd	carcucB0032
CsaV3_6G012970	Cucurbita maxima (Rimu)	cmacucB0743
CsaV3_6G012970	Cucurbita moschata (Rifu)	cmocucB0664
CsaV3_6G012970	Cucurbita moschata (Rifu)	cmocucB0733
CsaV3_6G012970	Cucurbita pepo (Zucchini)	cpecucB0937