Cp4.1LG16g00810 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g00810
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	MKS1-like protein
Location	Cp4.1LG16 : 1567379 .. 1568005 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCCGCCGGGATATCCCGCCGGCGGCAGCCCCAGAAAGAAGGAGATCCAGCTACAGGGTCCCCGTCCGCCGCAACTCCGCGTCAGTCAAGATTCCCGCAAAATCAAGAAGCCGCCGCCACACCCTCAACCGATTCCCCCAGCCGGACGCCCACCTCTCCCACCCGGCGCCGGCGCCACCCAATGGCCTCAGCCACTCATCATCTACGACATCTCCCCTAAAGTCATCCACGTCCCAGAGAACAACTTCATGTCCGTCGTCCAACGACTCACTGGACTCTCTTCCTCCGGCGCCGCCGCCCCCGACGGCGATCTCTCCCCAGCGGCGAGGCTGGCCGCAATCGAGAAAGCCAGTCCCCGACCGGAAAGAGAAAGAGAAATCGACGTTAGCGAGATGATGGATTTGGGGGAGATTTCGGTGGAGTTATGGCAAACCCCTGGAATCCTATCTCCGGCTCCGGCGAGTCTTGCTCCGATTCCGACAGGGTTTTTCTCGCCGGCGACTGAGCTTCAAAATTTGTCGTATTCGTTAATTCAGGAGCTGAGCCCTCATTGGCCAAGCCCTTCTGCTCTGTTTTCCCCAATTTCTTCACCAAATCTTTTCAACAATCTCTTTGATTTCTAG

mRNA sequence

ATGAACCCGCCGGGATATCCCGCCGGCGGCAGCCCCAGAAAGAAGGAGATCCAGCTACAGGGTCCCCGTCCGCCGCAACTCCGCGTCAGTCAAGATTCCCGCAAAATCAAGAAGCCGCCGCCACACCCTCAACCGATTCCCCCAGCCGGACGCCCACCTCTCCCACCCGGCGCCGGCGCCACCCAATGGCCTCAGCCACTCATCATCTACGACATCTCCCCTAAAGTCATCCACGTCCCAGAGAACAACTTCATGTCCGTCGTCCAACGACTCACTGGACTCTCTTCCTCCGGCGCCGCCGCCCCCGACGGCGATCTCTCCCCAGCGGCGAGGCTGGCCGCAATCGAGAAAGCCAGTCCCCGACCGGAAAGAGAAAGAGAAATCGACGTTAGCGAGATGATGGATTTGGGGGAGATTTCGGTGGAGTTATGGCAAACCCCTGGAATCCTATCTCCGGCTCCGGCGAGTCTTGCTCCGATTCCGACAGGGTTTTTCTCGCCGGCGACTGAGCTTCAAAATTTGTCGTATTCGTTAATTCAGGAGCTGAGCCCTCATTGGCCAAGCCCTTCTGCTCTGTTTTCCCCAATTTCTTCACCAAATCTTTTCAACAATCTCTTTGATTTCTAG

Coding sequence (CDS)

ATGAACCCGCCGGGATATCCCGCCGGCGGCAGCCCCAGAAAGAAGGAGATCCAGCTACAGGGTCCCCGTCCGCCGCAACTCCGCGTCAGTCAAGATTCCCGCAAAATCAAGAAGCCGCCGCCACACCCTCAACCGATTCCCCCAGCCGGACGCCCACCTCTCCCACCCGGCGCCGGCGCCACCCAATGGCCTCAGCCACTCATCATCTACGACATCTCCCCTAAAGTCATCCACGTCCCAGAGAACAACTTCATGTCCGTCGTCCAACGACTCACTGGACTCTCTTCCTCCGGCGCCGCCGCCCCCGACGGCGATCTCTCCCCAGCGGCGAGGCTGGCCGCAATCGAGAAAGCCAGTCCCCGACCGGAAAGAGAAAGAGAAATCGACGTTAGCGAGATGATGGATTTGGGGGAGATTTCGGTGGAGTTATGGCAAACCCCTGGAATCCTATCTCCGGCTCCGGCGAGTCTTGCTCCGATTCCGACAGGGTTTTTCTCGCCGGCGACTGAGCTTCAAAATTTGTCGTATTCGTTAATTCAGGAGCTGAGCCCTCATTGGCCAAGCCCTTCTGCTCTGTTTTCCCCAATTTCTTCACCAAATCTTTTCAACAATCTCTTTGATTTCTAG

Protein sequence

MNPPGYPAGGSPRKKEIQLQGPRPPQLRVSQDSRKIKKPPPHPQPIPPAGRPPLPPGAGATQWPQPLIIYDISPKVIHVPENNFMSVVQRLTGLSSSGAAAPDGDLSPAARLAAIEKASPRPEREREIDVSEMMDLGEISVELWQTPGILSPAPASLAPIPTGFFSPATELQNLSYSLIQELSPHWPSPSALFSPISSPNLFNNLFDF

Homology

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BLAST of Cp4.1LG16g00810 vs. Swiss-Prot
Match: MKS1_ARATH (Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 6.1e-26
Identity = 90/217 (41.47%), Postives = 120/217 (55.30%), Query Frame = 1


Query: 1   MNPPGYPAGGSP-----RKKEIQLQGPRPPQLRVSQDSRKIKKPPPHPQPIPPAGRPP-- 60
           M+P  Y AGG+P     +K+++Q+ GPRP  L V +DS KIKKPP HP P P   +PP  
Sbjct: 1   MDPSEYFAGGNPSDQQNQKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPY 60

Query: 61  LPPGAGATQWPQPLIIYDISPKVIHVPENNFMSVVQRLTGLSSSG--AAAPDGDLSPAAR 120
           +P         +P++IY +SPKV+H   + FM+VVQRLTG+SS     +   GD+SPAAR
Sbjct: 61  IP--------REPVVIYAVSPKVVHATASEFMNVVQRLTGISSGVFLESGGGGDVSPAAR 120

Query: 121 LAAIEKASPR-----PEREREIDVSEMMDLGEISVELWQTPGILSPAPASLAPIPTGFFS 180
           LA+ E ASPR       R+  ++++  M+  E +      PGILSP+PA L    TG FS
Sbjct: 121 LASTENASPRGGKEPAARDETVEINTAME--EAAEFGGYAPGILSPSPALLPTASTGIFS 180

Query: 181 PATELQNLSYSLIQELSPHWP----SPSALFSPISSP 200
           P        Y      SP  P    SP+   SP  SP
Sbjct: 181 P-------MYHQGGMFSPAIPLGLFSPAGFMSPFRSP 200

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BLAST of Cp4.1LG16g00810 vs. Swiss-Prot
Match: NSRB_ARATH (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana GN=NSRB PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-08
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = 1


Query: 21  GPRPPQLRVSQDSRKI-KKPP---PHPQPIPPAGRPPLPPGAGATQWPQPLIIYDISPKV 80
           GP+P  L+V  DS KI KKPP   PHPQP PP      P  +     P P+ IY ++P++
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPP--PGPVNIYTVTPRI 72

Query: 81  IHVPENNFMSVVQRLTGLSSSGAAAPDGDLS 108
           IH   NNFM++VQRLTG +S+   +     S
Sbjct: 73  IHTHPNNFMTLVQRLTGQTSTSTTSSSSSSS 101

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BLAST of Cp4.1LG16g00810 vs. TrEMBL
Match: A0A0A0LK21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302100 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.7e-83
Identity = 171/215 (79.53%), Postives = 182/215 (84.65%), Query Frame = 1


Query: 1   MNPPGYPAGGSP---RKKEIQLQGPRPPQLRVSQDSRKIKKPPPHPQPIPPAGRPPLPPG 60
           MNPPGY A GSP   RKKEIQLQGPRPPQLRVSQ+SRKIKKPPPHPQP+P  GRPPLPPG
Sbjct: 1   MNPPGYSAAGSPTTPRKKEIQLQGPRPPQLRVSQESRKIKKPPPHPQPVPQPGRPPLPPG 60

Query: 61  AGATQWPQPLIIYDISPKVIHVPENNFMSVVQRLTGLSSSGAAAPDGDLSPAARLAAIEK 120
              +QWPQPLIIYDISPKVIHV ENNFMSVVQRLTG SS+  A  DGDLSPAARLA IEK
Sbjct: 61  P--SQWPQPLIIYDISPKVIHVAENNFMSVVQRLTGQSST--AVTDGDLSPAARLATIEK 120

Query: 121 ASPRPEREREIDVSEMMDLGEISVELWQTPGILSPAPASLAPIPTGFFSPATELQNLSYS 180
           ASPR EREREI+VS+MMDL E+SVEL Q PGILSPAP +LAPIPTG+FSPA E Q+ SYS
Sbjct: 121 ASPRSEREREINVSDMMDLAEVSVELGQIPGILSPAPGTLAPIPTGYFSPAIEPQSFSYS 180

Query: 181 LIQELSPHWPSPSALF-----SPISSPNLFNNLFD 208
           L  ELSPHW SPSALF     SPISSPN+FNNLFD
Sbjct: 181 LFHELSPHWASPSALFSTPLISPISSPNIFNNLFD 211

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BLAST of Cp4.1LG16g00810 vs. TrEMBL
Match: W0TUF0_ACAMN (Map kinase substrate OS=Acacia mangium PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.9e-36
Identity = 111/220 (50.45%), Postives = 141/220 (64.09%), Query Frame = 1


Query: 1   MNPPGYPAGGSP---RKKEIQLQGPRPPQLRVSQDSRKIKKPPPHPQPIPPAGRPPLPPG 60
           MNPPGYP G SP    ++E+ LQGPRP  L VS++S KI+KPP       PA  P     
Sbjct: 1   MNPPGYPTGDSPPPQSRRELALQGPRPSPLSVSKESHKIRKPPLPRHAYRPAAVPC---- 60

Query: 61  AGATQWPQPLIIYDISPKVIHVPENNFMSVVQRLTGLSSSGAAAPDGDLSPAARLAAIEK 120
               + PQP+IIY +SPKVIHVP ++FM VVQRLTG SS   A+  GD+SPAARLA+IEK
Sbjct: 61  --QQEQPQPVIIYSVSPKVIHVPVDDFMKVVQRLTGPSS--PASRSGDVSPAARLASIEK 120

Query: 121 ASPRPEREREIDVSEMMDLGEISVELWQTPGILSPAPASLAPIPTGFFSPATELQNLSYS 180
            SP  E+ER  +  EMMDL E  VE+ Q  GILSPAP +L  I +  FSP T+ + LS+ 
Sbjct: 121 TSP-SEKERFQNGDEMMDLLE-GVEVSQFHGILSPAPGTLPGISSEIFSPTTDPETLSW- 180

Query: 181 LIQELSPHWP-----SPSALF-----SPISSPNLFNNLFD 208
            + ++SP W      SPS LF     SP+ SP++F ++FD
Sbjct: 181 -LHDMSPFWSSSFAGSPSGLFSTSIASPLPSPDVF-SIFD 207

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BLAST of Cp4.1LG16g00810 vs. TrEMBL
Match: K7KV66_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G151400 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.0e-35
Identity = 117/227 (51.54%), Postives = 138/227 (60.79%), Query Frame = 1


Query: 1   MNPPGYPAGGSPR-KKEIQLQGPRPPQLRVSQDSRKIKKPPPHPQPIPPAGRPPLPPGAG 60
           MNPP  P GG+P  KKE+QLQGPRPP L+VS++S KIKKPPPHP        P  PP   
Sbjct: 1   MNPPEIPFGGAPLPKKELQLQGPRPPPLKVSKESHKIKKPPPHPAH-HHHNYPHAPPDQN 60

Query: 61  ATQWPQPLIIYDISPKVIHVPENNFMSVVQRLTGLSSSGAAAPD--GDLSPAARLAAIEK 120
             Q  +P+IIY +SPKVIHV   +FM VVQRLTG +S G   P   GD+SPAARLA+IEK
Sbjct: 61  LQQQREPVIIYSVSPKVIHVTPGDFMDVVQRLTG-ASIGEEPPSGRGDVSPAARLASIEK 120

Query: 121 ASPRPERERE-----IDVSEMMDLGEISVELWQTPGILSPAPASLAPIPTGFFSPATELQ 180
            SP  ERERE     ID +    LGE  VE+ Q PGIL+P P +L PIP   FSP  E Q
Sbjct: 121 TSP-SERERERVLHNIDDNIAWMLGE-GVEVGQFPGILTPEPGTLPPIPAEVFSPVREAQ 180

Query: 181 NLSYSLIQELSP-HWPSPSALFSPIS-----------SPNLFNNLFD 208
             + S   + SP +W + S L SP             SPNLF +LFD
Sbjct: 181 TAA-SYWNDFSPSYWSASSFLASPSGFLSVTVASPQPSPNLF-SLFD 221

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BLAST of Cp4.1LG16g00810 vs. TrEMBL
Match: G7LD80_MEDTR (MKS1-like protein OS=Medicago truncatula GN=MTR_8g093335 PE=2 SV=2)

HSP 1 Score: 155.2 bits (391), Expect = 8.6e-35
Identity = 110/225 (48.89%), Postives = 139/225 (61.78%), Query Frame = 1


Query: 1   MNPPGYPAG-----GSPRKKEIQLQGPRPPQLRVSQDSRKIKKPPPHPQPIPPAGRPPLP 60
           MNPP +P+G      SPR+ E+Q+QG RPP LRVS++SR I+KPP     +PPA      
Sbjct: 1   MNPPEFPSGVGTSTPSPRR-ELQIQGTRPPPLRVSKESRTIRKPP-----LPPAAAHHHQ 60

Query: 61  PGAGATQWPQPLIIYDISPKVIHVPENNFMSVVQRLTGLSSSGAAAPD--GDLSPAARLA 120
           P AGA+Q  QPLIIY +SPKV+H+P ++FM VVQRLTG  S+G  AP   G +SPAARLA
Sbjct: 61  P-AGASQHRQPLIIYSVSPKVLHIPVSDFMDVVQRLTG-PSAGEEAPQQSGAVSPAARLA 120

Query: 121 AIEKASPRPEREREIDVSEMMDLGEISVELWQTPGILSPAPASLAPIPTGFFSPATELQN 180
           +IE+ SP      +  V E +      VE+ Q PGILSPAPA+L PI  GFFSP  E Q 
Sbjct: 121 SIERTSPTERERIQQTVDEDLTWLLEGVEMGQFPGILSPAPATLPPISQGFFSPMNEPQT 180

Query: 181 LSYSLIQELSPHW------PSPSALF-----SPISSPNLFNNLFD 208
             +    + SP W       SPS L      SP+ SP+LF ++FD
Sbjct: 181 TPF--WHDTSPFWYGNSFVASPSGLLSATVVSPLPSPDLF-SIFD 214

[Close]

BLAST of Cp4.1LG16g00810 vs. TrEMBL
Match: B9HEJ4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03770g PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-34
Identity = 106/224 (47.32%), Postives = 137/224 (61.16%), Query Frame = 1


Query: 1   MNPPGYPAGGSPR----KKEIQLQGPRPPQLRVSQDSRKIKKPPPHPQPIPPAGRPPLPP 60
           M+P  YP  G P     KK++Q+QGPRP  L+++QDS KIKKPPP P             
Sbjct: 1   MDPYRYPTTGKPPPPPPKKQLQIQGPRPSALKLNQDSHKIKKPPPPPP------------ 60

Query: 61  GAGATQWPQPLIIYDISPKVIHVPENNFMSVVQRLTGLSSSGAAAPDGDLSPAARLAAIE 120
                   QP++IY +SPK IH  E+NFM+VVQRLTGL SSG    DG +SPAARLAA E
Sbjct: 61  -------KQPVVIYAVSPKTIHTEESNFMAVVQRLTGL-SSGDFFHDGSVSPAARLAATE 120

Query: 121 KASP----RPEREREIDVSEMMDLGEISVELWQTPGILSPAPASLAPIPTGFFSPATELQ 180
           KASP    RP   ++    ++M++ +  V   Q PGILSPAPA L P+PTGFFSPA+   
Sbjct: 121 KASPRELTRPSNTQDSSDDDLMEMLK-EVGAGQIPGILSPAPAMLPPVPTGFFSPASTDA 180

Query: 181 NLSYSLIQE---LSPHW-PSPSALF------SPISSPNLFNNLF 207
           N S S + +   +SP +  SPS LF      SP+ SP++F++LF
Sbjct: 181 N-SQSFLNDNFNMSPFFMASPSGLFPGPSIVSPLHSPDIFSSLF 202

[Close]

BLAST of Cp4.1LG16g00810 vs. TAIR10
Match: AT3G18690.1 (AT3G18690.1 MAP kinase substrate 1)

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-27
Identity = 90/217 (41.47%), Postives = 120/217 (55.30%), Query Frame = 1


Query: 1   MNPPGYPAGGSP-----RKKEIQLQGPRPPQLRVSQDSRKIKKPPPHPQPIPPAGRPP-- 60
           M+P  Y AGG+P     +K+++Q+ GPRP  L V +DS KIKKPP HP P P   +PP  
Sbjct: 1   MDPSEYFAGGNPSDQQNQKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPY 60

Query: 61  LPPGAGATQWPQPLIIYDISPKVIHVPENNFMSVVQRLTGLSSSG--AAAPDGDLSPAAR 120
           +P         +P++IY +SPKV+H   + FM+VVQRLTG+SS     +   GD+SPAAR
Sbjct: 61  IP--------REPVVIYAVSPKVVHATASEFMNVVQRLTGISSGVFLESGGGGDVSPAAR 120

Query: 121 LAAIEKASPR-----PEREREIDVSEMMDLGEISVELWQTPGILSPAPASLAPIPTGFFS 180
           LA+ E ASPR       R+  ++++  M+  E +      PGILSP+PA L    TG FS
Sbjct: 121 LASTENASPRGGKEPAARDETVEINTAME--EAAEFGGYAPGILSPSPALLPTASTGIFS 180

Query: 181 PATELQNLSYSLIQELSPHWP----SPSALFSPISSP 200
           P        Y      SP  P    SP+   SP  SP
Sbjct: 181 P-------MYHQGGMFSPAIPLGLFSPAGFMSPFRSP 200

[Close]

BLAST of Cp4.1LG16g00810 vs. TAIR10
Match: AT1G21326.1 (AT1G21326.1 VQ motif-containing protein)

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-11
Identity = 48/104 (46.15%), Postives = 61/104 (58.65%), Query Frame = 1


Query: 11  SPRKKEIQLQGPRPPQLRVSQDSRKI-KKPP---PHPQPIPPAGRPPLPPGAGATQWPQP 70
           SPR + I   GPRP  L+V  DS KI KKPP   PHPQP PP      P  +     P P
Sbjct: 5   SPRSRGIL--GPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPP--PGP 64

Query: 71  LIIYDISPKVIHVPENNFMSVVQRLTGLSSSGAAAPDGDLSPAA 111
           +IIY +SP++IH   NNFM++VQRLTG +S+   +     S +A
Sbjct: 65  VIIYTVSPRIIHTHPNNFMTLVQRLTGKTSTSTTSSSYSSSTSA 104

[Close]

BLAST of Cp4.1LG16g00810 vs. TAIR10
Match: AT1G21320.1 (AT1G21320.1 nucleotide binding;nucleic acid binding)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-09
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = 1


Query: 21  GPRPPQLRVSQDSRKI-KKPP---PHPQPIPPAGRPPLPPGAGATQWPQPLIIYDISPKV 80
           GP+P  L+V  DS KI KKPP   PHPQP PP      P  +     P P+ IY ++P++
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPP--PGPVNIYTVTPRI 72

Query: 81  IHVPENNFMSVVQRLTGLSSSGAAAPDGDLS 108
           IH   NNFM++VQRLTG +S+   +     S
Sbjct: 73  IHTHPNNFMTLVQRLTGQTSTSTTSSSSSSS 101

[Close]

BLAST of Cp4.1LG16g00810 vs. TAIR10
Match: AT3G18360.1 (AT3G18360.1 VQ motif-containing protein)

HSP 1 Score: 47.8 bits (112), Expect = 9.8e-06
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 1


Query: 22  PRPPQLRVSQDSRKIKKPPPHPQPIPPAGRPPLPPGAGATQWPQPLIIYDISPKVIHVPE 81
           P PP L+V++DS  IKKPP  P     A +P             P+IIY  +P++IH   
Sbjct: 41  PSPPTLKVNKDSHVIKKPPS-PSSFSSAAKPR-----------HPVIIYTHTPRIIHTNP 100

Query: 82  NNFMSVVQRLTGLSSS 98
            +FM++VQ+LTG++ S
Sbjct: 101 KDFMALVQKLTGMTHS 104

[Close]

BLAST of Cp4.1LG16g00810 vs. NCBI nr
Match: gi|659121968|ref|XP_008460908.1| (PREDICTED: protein MKS1-like [Cucumis melo])

HSP 1 Score: 325.1 bits (832), Expect = 9.0e-86
Identity = 174/216 (80.56%), Postives = 185/216 (85.65%), Query Frame = 1


Query: 1   MNPPGYPAGGSP---RKKEIQLQGPRPPQLRVSQDSRKIKKPPPHPQPIPPAGRPPLPPG 60
           MNPPGY A GSP   RKKEIQLQGPRPPQLRVSQ+SRKIKKPPPHPQP+PP GRPPLPPG
Sbjct: 1   MNPPGYSAAGSPTTPRKKEIQLQGPRPPQLRVSQESRKIKKPPPHPQPVPPPGRPPLPPG 60

Query: 61  AGATQWPQPLIIYDISPKVIHVPENNFMSVVQRLTGLSSSGAAAPDGDLSPAARLAAIEK 120
              +QWPQPLIIYDISPKVIHV ENNFMSVVQRLTG SS+  A  DGDLSPAARLA IEK
Sbjct: 61  P--SQWPQPLIIYDISPKVIHVAENNFMSVVQRLTGQSST--AVTDGDLSPAARLATIEK 120

Query: 121 ASPRPEREREIDVSEMMDLGEISVELWQTPGILSPAPASLAPIPTGFFSPATELQNLSYS 180
           ASPR EREREI+VS+MMDL E+SVEL Q PGILSPAP +LAPIPTG+FSPA E Q+ SYS
Sbjct: 121 ASPRSEREREINVSDMMDLAEVSVELGQIPGILSPAPGTLAPIPTGYFSPAIEPQSFSYS 180

Query: 181 LIQELSPHWPSPSALF-----SPISSPNLFNNLFDF 209
           L  ELSPHWPSPSALF     SPISSPN+FNNLFDF
Sbjct: 181 LFHELSPHWPSPSALFSTPLISPISSPNIFNNLFDF 212

[Close]

BLAST of Cp4.1LG16g00810 vs. NCBI nr
Match: gi|778670197|ref|XP_011649396.1| (PREDICTED: protein MKS1-like [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 2.4e-83
Identity = 171/215 (79.53%), Postives = 182/215 (84.65%), Query Frame = 1


Query: 1   MNPPGYPAGGSP---RKKEIQLQGPRPPQLRVSQDSRKIKKPPPHPQPIPPAGRPPLPPG 60
           MNPPGY A GSP   RKKEIQLQGPRPPQLRVSQ+SRKIKKPPPHPQP+P  GRPPLPPG
Sbjct: 1   MNPPGYSAAGSPTTPRKKEIQLQGPRPPQLRVSQESRKIKKPPPHPQPVPQPGRPPLPPG 60

Query: 61  AGATQWPQPLIIYDISPKVIHVPENNFMSVVQRLTGLSSSGAAAPDGDLSPAARLAAIEK 120
              +QWPQPLIIYDISPKVIHV ENNFMSVVQRLTG SS+  A  DGDLSPAARLA IEK
Sbjct: 61  P--SQWPQPLIIYDISPKVIHVAENNFMSVVQRLTGQSST--AVTDGDLSPAARLATIEK 120

Query: 121 ASPRPEREREIDVSEMMDLGEISVELWQTPGILSPAPASLAPIPTGFFSPATELQNLSYS 180
           ASPR EREREI+VS+MMDL E+SVEL Q PGILSPAP +LAPIPTG+FSPA E Q+ SYS
Sbjct: 121 ASPRSEREREINVSDMMDLAEVSVELGQIPGILSPAPGTLAPIPTGYFSPAIEPQSFSYS 180

Query: 181 LIQELSPHWPSPSALF-----SPISSPNLFNNLFD 208
           L  ELSPHW SPSALF     SPISSPN+FNNLFD
Sbjct: 181 LFHELSPHWASPSALFSTPLISPISSPNIFNNLFD 211

[Close]

BLAST of Cp4.1LG16g00810 vs. NCBI nr
Match: gi|1021493552|ref|XP_016189761.1| (PREDICTED: protein MKS1 [Arachis ipaensis])

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 112/225 (49.78%), Postives = 144/225 (64.00%), Query Frame = 1


Query: 1   MNPPGYPAG--GSPR-KKEIQLQGPRPPQLRVSQDSRKIKKPPPHPQPIPPAGRPPLPPG 60
           MN P + +G   SP  ++E+ +QGPRPP LRVS++S KI KPP  PQP   A +P  PP 
Sbjct: 1   MNLPEFSSGETSSPSSRRELPIQGPRPPPLRVSKESHKISKPPRPPQPAA-ANQPLPPPP 60

Query: 61  AGATQWPQPLIIYDISPKVIHVPENNFMSVVQRLTGLSSSGAAAP----DGDLSPAARLA 120
             A Q  +P+IIY +SPKV+HV  ++FM+VVQRLTG +SS A        GD+SPAARLA
Sbjct: 61  DAAAQHREPVIIYSVSPKVLHVTVSDFMNVVQRLTGPNSSSAGEEPLPRSGDISPAARLA 120

Query: 121 AIEKASPRPEREREIDVSEMMD--LGEISVELWQTPGILSPAPASLAPIPTGFFSPATEL 180
           +IEK SP  E+ER     E M   L  + VE+ Q P ILSPAP +L PI +GFFSPA++ 
Sbjct: 121 SIEKTSP-SEKERVHAGDEDMSWLLEGVGVEMGQFPSILSPAPGTLPPISSGFFSPASDP 180

Query: 181 QNLSYSLIQELSPHWP------SPSAL---FSPISSPNLFNNLFD 208
           Q  S+    EL+P WP      SPS L    SP+ SP+LF ++FD
Sbjct: 181 QTASF--FHELNPFWPANNFVASPSGLLSVLSPLPSPDLF-SIFD 220

[Close]

BLAST of Cp4.1LG16g00810 vs. NCBI nr
Match: gi|1012095453|ref|XP_015955898.1| (PREDICTED: protein MKS1 [Arachis duranensis])

HSP 1 Score: 159.8 bits (403), Expect = 5.0e-36
Identity = 112/225 (49.78%), Postives = 144/225 (64.00%), Query Frame = 1


Query: 1   MNPPGYPAG--GSPR-KKEIQLQGPRPPQLRVSQDSRKIKKPPPHPQPIPPAGRPPLPPG 60
           MN P + +G   SP  ++E+ +QGPRPP LRVS++S KI KPP  PQP   A +P  PP 
Sbjct: 1   MNLPEFSSGETSSPSSRRELPIQGPRPPPLRVSKESHKISKPPRPPQPAA-ANQPLPPPP 60

Query: 61  AGATQWPQPLIIYDISPKVIHVPENNFMSVVQRLTGLSSSGAAAP----DGDLSPAARLA 120
             A Q  +P+IIY +SPKV+HV  ++FM+VVQRLTG +SS A        GD+SPAARLA
Sbjct: 61  DAAAQHREPVIIYSVSPKVLHVTVSDFMNVVQRLTGPNSSSAGEEPLPRSGDISPAARLA 120

Query: 121 AIEKASPRPEREREIDVSEMMD--LGEISVELWQTPGILSPAPASLAPIPTGFFSPATEL 180
           +IEK SP  E+ER     E M   L  + VE+ Q P ILSPAP +L PI +GFFSPA++ 
Sbjct: 121 SIEKTSP-SEKERVHAGDEDMSWLLEGVEVEMGQFPSILSPAPGTLPPISSGFFSPASDP 180

Query: 181 QNLSYSLIQELSPHWP------SPSAL---FSPISSPNLFNNLFD 208
           Q  S+    EL+P WP      SPS L    SP+ SP+LF ++FD
Sbjct: 181 QTGSF--FHELNPFWPANNFVASPSGLLSVLSPLPSPDLF-SIFD 220

[Close]

BLAST of Cp4.1LG16g00810 vs. NCBI nr
Match: gi|575074794|dbj|BAO45874.1| (map kinase substrate [Acacia mangium])

HSP 1 Score: 159.1 bits (401), Expect = 8.5e-36
Identity = 111/220 (50.45%), Postives = 141/220 (64.09%), Query Frame = 1


Query: 1   MNPPGYPAGGSP---RKKEIQLQGPRPPQLRVSQDSRKIKKPPPHPQPIPPAGRPPLPPG 60
           MNPPGYP G SP    ++E+ LQGPRP  L VS++S KI+KPP       PA  P     
Sbjct: 1   MNPPGYPTGDSPPPQSRRELALQGPRPSPLSVSKESHKIRKPPLPRHAYRPAAVPC---- 60

Query: 61  AGATQWPQPLIIYDISPKVIHVPENNFMSVVQRLTGLSSSGAAAPDGDLSPAARLAAIEK 120
               + PQP+IIY +SPKVIHVP ++FM VVQRLTG SS   A+  GD+SPAARLA+IEK
Sbjct: 61  --QQEQPQPVIIYSVSPKVIHVPVDDFMKVVQRLTGPSS--PASRSGDVSPAARLASIEK 120

Query: 121 ASPRPEREREIDVSEMMDLGEISVELWQTPGILSPAPASLAPIPTGFFSPATELQNLSYS 180
            SP  E+ER  +  EMMDL E  VE+ Q  GILSPAP +L  I +  FSP T+ + LS+ 
Sbjct: 121 TSP-SEKERFQNGDEMMDLLE-GVEVSQFHGILSPAPGTLPGISSEIFSPTTDPETLSW- 180

Query: 181 LIQELSPHWP-----SPSALF-----SPISSPNLFNNLFD 208
            + ++SP W      SPS LF     SP+ SP++F ++FD
Sbjct: 181 -LHDMSPFWSSSFAGSPSGLFSTSIASPLPSPDVF-SIFD 207

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g00810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MKS1_ARATH	6.1e-26	41.47	Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2	[more]
NSRB_ARATH	2.6e-08	43.96	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana GN=NSRB PE=2 SV=1	[more]

BLAST of Cp4.1LG16g00810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK21_CUCSA	1.7e-83	79.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302100 PE=4 SV=1	[more]
W0TUF0_ACAMN	5.9e-36	50.45	Map kinase substrate OS=Acacia mangium PE=2 SV=1	[more]
K7KV66_SOYBN	1.0e-35	51.54	Uncharacterized protein OS=Glycine max GN=GLYMA_06G151400 PE=4 SV=1	[more]
G7LD80_MEDTR	8.6e-35	48.89	MKS1-like protein OS=Medicago truncatula GN=MTR_8g093335 PE=2 SV=2	[more]
B9HEJ4_POPTR	1.1e-34	47.32	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03770g PE=4 SV=1	[more]

BLAST of Cp4.1LG16g00810 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18690.1	3.4e-27	41.47	MAP kinase substrate 1	[more]
AT1G21326.1	3.5e-11	46.15	VQ motif-containing protein	[more]
AT1G21320.1	1.5e-09	43.96	nucleotide binding;nucleic acid binding	[more]
AT3G18360.1	9.8e-06	39.47	VQ motif-containing protein	[more]

BLAST of Cp4.1LG16g00810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121968\|ref\|XP_008460908.1\|	9.0e-86	80.56	PREDICTED: protein MKS1-like [Cucumis melo]	[more]
gi\|778670197\|ref\|XP_011649396.1\|	2.4e-83	79.53	PREDICTED: protein MKS1-like [Cucumis sativus]	[more]
gi\|1021493552\|ref\|XP_016189761.1\|	2.2e-36	49.78	PREDICTED: protein MKS1 [Arachis ipaensis]	[more]
gi\|1012095453\|ref\|XP_015955898.1\|	5.0e-36	49.78	PREDICTED: protein MKS1 [Arachis duranensis]	[more]
gi\|575074794\|dbj\|BAO45874.1\|	8.5e-36	50.45	map kinase substrate [Acacia mangium]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009870	defense response signaling pathway, resistance gene-dependent
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g00810.1	Cp4.1LG16g00810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 72..96 score: 1.
None	No IPR available	PANTHER	PTHR33143	FAMILY NOT NAMED	coord: 12..206 score: 1.9
None	No IPR available	PANTHER	PTHR33143:SF5	SUBFAMILY NOT NAMED	coord: 12..206 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG16g00810	Cucsa.249990	Cucumber (Gy14) v1	cgycpeB0665
Cp4.1LG16g00810	CmaCh20G010680	Cucurbita maxima (Rimu)	cmacpeB565
Cp4.1LG16g00810	CmaCh02G006220	Cucurbita maxima (Rimu)	cmacpeB623
Cp4.1LG16g00810	CmoCh02G006260	Cucurbita moschata (Rifu)	cmocpeB573
Cp4.1LG16g00810	CmoCh20G010760	Cucurbita moschata (Rifu)	cmocpeB517
Cp4.1LG16g00810	Cla007798	Watermelon (97103) v1	cpewmB288
Cp4.1LG16g00810	Csa2G302100	Cucumber (Chinese Long) v2	cpecuB268
Cp4.1LG16g00810	MELO3C023257	Melon (DHL92) v3.5.1	cpemeB261
Cp4.1LG16g00810	ClCG02G000620	Watermelon (Charleston Gray)	cpewcgB268
Cp4.1LG16g00810	CSPI02G15600	Wild cucumber (PI 183967)	cpecpiB270
Cp4.1LG16g00810	Lsi10G007140	Bottle gourd (USVL1VR-Ls)	cpelsiB222
Cp4.1LG16g00810	MELO3C023257.2	Melon (DHL92) v3.6.1	cpemedB305
Cp4.1LG16g00810	CsaV3_2G018150	Cucumber (Chinese Long) v3	cpecucB0335
Cp4.1LG16g00810	Bhi10G001326	Wax gourd	cpewgoB0359
Cp4.1LG16g00810	CsGy2G015570	Cucumber (Gy14) v2	cgybcpeB194
Cp4.1LG16g00810	Carg11687	Silver-seed gourd	carcpeB1472
Cp4.1LG16g00810	Carg24324	Silver-seed gourd	carcpeB1010

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG16g00810	Cp4.1LG05g10550	Cucurbita pepo (Zucchini)	cpecpeB320

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG16g00810	Silver-seed gourd	carcpeB1132
Cp4.1LG16g00810	Cucurbita pepo (Zucchini)	cpecpeB295
Cp4.1LG16g00810	Watermelon (Charleston Gray)	cpewcgB274
Cp4.1LG16g00810	Watermelon (97103) v1	cpewmB302
Cp4.1LG16g00810	Melon (DHL92) v3.5.1	cpemeB268
Cp4.1LG16g00810	Cucumber (Gy14) v2	cgybcpeB199
Cp4.1LG16g00810	Melon (DHL92) v3.6.1	cpemedB312