Cp4.1LG15g06670 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG15g06670
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RING-H2 finger protein ATL18
Location	Cp4.1LG15 : 7282260 .. 7288952 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTCATGGGAGCGTTGCAGATGCAATTACAATCTCGCCTTCGAGTTTCGAAGATTTTGTCTTCAACAATTCGGAATTGGGAAAGAGGCTTTCCTCTGCTCCATGATCCATTGCGAACGCCGGATTTGTCACTCTCGCCGGTGGAATCTCGCTGTTTTAGCTCCAATTCCATGGATGACGATTGGAACTTCTCAAGGTCCGAGCCGAGAAGCAGCCCGCCGCAACGACGTTCTCCCCCGGATCCTCGGGAAGCTCGTCGAGTTCCCAAATTCGCCGGGGAAGGATCTGCTCCTTACCCTGAGGACAATCGGAATCAACGGTTTAATAGGCATTCGGAAGGTTCCTCGTCCCGATTCGCAAACGAAGGGCCGATGTCGCGGCGAAGGAATGAGTCTTTGTCTCAGAAGGATTTTAGCTTTCTTGAAAAATTCAAGCTGAACACTGACAATCAGAGTACTAGTACAGAGAAAATCGAGCCGAGCTCTTCTGCTCAGTTTTCTGAATCAATGCAAGGGGAGCAATCGCAACCACAGTGTCCTCCAGAAGCGGATGAGATATTCAGGAAAATGAAGGAAACTGGTCTAATTCCCAACGCTGTTGCTATGCTTGATGGGCTTTGCAAGGATGGGCTTATCCAAGAAGCAATGAAACTATTTGGTTTGATTCGTGAGAAGGGTACAATTCCAGAAGTTGTGGTTTACACTGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGCTTGATGAAGCAATTAGGATTTTCAGGAAAATGCAGAATAATGGCATTTCTCCCAATGCCTTCAGTTACGGCATCTTGATACAGGGACTGTACAAATCCAAACAATTAGAGGATGCCGTATCATTTTGCATTGAGATGTTAGAATCTGGGCATTCTCCAAATCTAACCACTTTTGTCGGCCTAATTGATGAGTTATGCAAAGAAAAGGGGGAGGACGAAGCTCATACTGTCATAGAAACCTTAAAACAAAAGGGATTCTTGATTAATGAGAAAGCTTTAAGAGAATTCTTGAATAAAAGAGCCCCATTTTCTCCACATATCTGGGAACTAATCTTCGGGAAGAAAACGAAGGAATTTTTCTGAGATTCTTGTCGTGGTTAAGAAGTTGTAAGTCTTCTTTCTTTTCCCTTTTATGCAATTCCTTCGCCAATTCAAGATATGTTTACCATATGTTATATGGAGTAATTTGAGTAGATAACCGACAGGTTTGCAATTGACATTGTCTTCAATCTTTTGATAGCATCTATAAGCTTATACGAATTGTTGGGTACCAAAATGATTAGATACAAAACAAGGAAAAGGAAAAAAAAGGAGAATATCCTGTAAGTTACCTTTGTTTAATTAGATTTTATTAAATTTTTATTTTCATTAGCATTCTAGGATGGCTATGATTTATAGAAGTGGTGGTTCATGTATGTATTAATGAGACAAACAACCTTTCATTCAGAAAATGAAGCATGGAAATCCAGAAAACAAAGCCCACAAAAGGGAGTGGCTCTAAAGAAAGCGCCTCATGTTATGTAAAATATTTTCCATTGAATAGTTACAAAAGACCTTTCGTCATCAAAGCCCAAAGACCTCCCCCCACCCCCCCCCGATCCTTATCTTCACTAAGAAAGATCGTTTACCTTAGCTAATTTTGATTTCCTCTTGTCCACCTCAAGCTTACTGCTCAAGTTTATAAGTTTTAGAATCATTCAACATAAAGCTAGCCCAACCTATGACCAAGGACAATAAGATATGCTCATTCGTTAACAGCTTCCAAAATCACTCGCATAAGTATAAGCATACAAGAACTAAGCTGTGAATCTTACTTAGAGTTGCTGTTCCCCCCTCCCTCCCTCTTTCTCTTCTTCTTCTTCATCTGCTTTTTCTTATCAACACCATCTAGAAGGGGGAAAGAACTTACACGTATCAAATCACTTTGAGTTCTCCTAATTGGAAAGGTTCAAATTGCCTTTAAATGATACTCAAAATGTCTTGTCCTGCTGTAACATATTCACGACTTTTGTGTCGAACTAAGAGTTATGTGTGCATTTCTCTCTACAACCTTAATTACATTTCACTCTAGAAGAATAACTGTTTGTGAAGATTTTGACTTGGATGCTCAATTAGGGAGCACTACTCAATTTTACAGTTCTTAAATATTTGCGAGCTAAAGTTGCAGCTTATGGGAGAGAAAGAGTTTGTTCACGTGCAGATGGAACTCAACTTAAGATTAGTATGTCATTTCATTTTAGAATTGATGAGTGGAAGTTCATACACAATGTTATGTTCCAGAATATTTGGNTGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGCTTGATGAAGCAATTAGGATTTTCAGGAAAATGCAGAATAATGGCATTTCTCCCAATGCCTTCAGTTACGGCATCTTGATACAGGGACTGTACAAATCCAAACAATTAGAGGATGCCGTATCATTTTGCATTGAGATGTTAGAATCTGGGCATTCTCCAAATCTAACCACTTTTGTCGGCCTAATTGATGAGTTATGCAAAGAAAAGGGGGAGGACGAAGCTCATACTGTCATAGAAACCTTAAAACAAAAGGGATTCTTGATTAATGAGAAAGCTTTAAGAGAATTCTTGAATAAAAGAGCCCCATTTTCTCCACATATCTGGGAACTAATCTTCGGGAAGAAAACGAAGGAATTTTTCTGAGATTCTTGTCGTGGTTAAGAAGTTGTAAGTCTTCTTTCTTTTCCCTTTTATGCAATTCCTTCGCCAATTCAAGATATGTTTACCATATGTTATATGGAGTAATTTGAGTAGATAACCGACAGGTTTGCAATTGACATTGTCTTCAATCTTTTGATAGCATCTATAAGCTTATACGAATTGTTGGGTACCAAAATGATTAGATACAAAACAAGGAAAAGGAAAAAAAAGGAGAATATCCTGTAAGTTACCTTTGTTTAATTAGATTTTATTAAATTTTTATTTTCATTAGCATTCTAGGATGGCTATGATTTATAGAAGTGGTGGTTCATGTATGTATTAATGAGACAAACAACCTTTCATTCAGAAAATGAAGCATGGAAATCCAGAAAACAAAGCCCACAAAAGGGAGTGGCTCTAAAGAAAGCGCCTCATGTTATGTAAAATATTTTCCATTGAATAGTTACAAAAGACCTTTCGTCATCAAAGCCCAAAGACCTCCCCCCNCACCATCTAGAAGGGGGAAAGAACTTACACGTATCAAATCACTTTGAGTTCTCCTAATTGGAAAGGTTCAAATTGCCTTTAAATGATACTCAAAATGTCTTGTCCTGCTGTAACATATTCACGACTTTTGTGTCGAACTAAGAGTTATGTGTGCATTTCTCTCTACAACCTTAATTACATTTCACTCTAGAAGAATAACTGTTTGTGAAGATTTTGACTTGGATGCTCAATTAGGGAGCACTACTCAATTTTACAGTTCTTAAATATTTGCGAGCTAAAGTTGCAGCTTATGGGAGAGAAAGAGTTTGTTCACGTGCAGATGGAACTCAACTTAAGATTAGTATGTCATTTCATTTTAGAATTGATGAGTGGAAGTTCATACACAATGTTATGTTCCAGAATATTTGGTCATTATTGTTATGATGGATCAATTAGGAGTTTTCATTTAAAAAGGCCGCATGATTTATTTTCTGTTAGTTATGGCTAAGGATATGCAGCTCTCCAAGTGTTAATGCTTATCTGTATGATCATGTAGGTGAAGATACCAATCATGTTACTGAGAAGAAACCGCAAGTTGAAATTAATGAAACTCAGTATCCAGATTAAAACTGGTTCAAGAGTGAACAGTCTACGACTGTTGAAGTGAGCTCTAAGAGTAGTTCAAGTTTGGAGAACTCAATACTTTGTGCAGTCTAGTTCATTGACCTTTGGTTAAATATTGTGTGGATCAAACGGCATGGCAGATATTGGCTACGGTTAATGACATGGATATTTTTTGATAGATTGTGAACATCAGAAAATGTGTTAAGTTCACTATTTACCTCTTAGAATTTTTTTTTTTTACAAACATTTATGTAAGTTATGAATATTTCCTTGGTTTCTACCATTAATGGCTACATAGAGATGGATTTTTAGGTTAAATTATTGATCTAGTTTTTGAACTTTGATGATTGTGTCATTTGGTTCCTAAACTTTCAAAAATGTCTAATAGGTCTCTGAACTTTCAATTTTGTGTCTAATAGAGTTCTAAATTTTCGATTTTGTATCTAATAGGTTCTTGATAGTAGATTTATGTATATGAAACTGAATTTTGTCTAATGAAATGCTAAAATTTCAATTTTATGTTTAGTAGATACAAGATTAAAAAATTTAGGGGTTTGTGGTATTCAAAATTGAAAATTTAAGGATCTATTGGACACTTTTTAAAGTTTAGGAACTCAATGGACATAAAATTCAAAGGTTAAAAAATATTAGGTGCCTTTTAAAATTGTGTGACCTATTAGAGATTTTTGAAAGTTCAGGAACTAAATAGACACAAGTTAAAGTTCATTTTATCGAGATTAGCTGAGTATCTGTTGTGAGTTATGTTCATGTTCATGGCTGTACTACTCCCTGTTATATTATTTTAATTTAGGTGAGAAGAGTGAAGAATATGGATCAGATACACCACCTGGCTTTGGAGAAGAGAATGAGGAAGGAAAGGCCACGTTGCCAGGTAGCCATTTATTTTAAAGCTAAGTACAACTCATCAGATATATTATGTATTTTCTTTCCAGGAGCATGTATGATTTGGTCGGTATTATTCTATCTTGAAGTGTAAGTTTAGTCAAAACCTGGGAAGGGAGGTGGCTGCTCTTGTTTTCTTATTGTTATTATAAGTGAAAAATGGAAAAGAAAAATGGTATTAAGATATGAATGGAAGATATTGTTATCATGTGCATATTTAGATACTTGAGGCATTGACTGACTTTTGAAGTATTGAGTGCAATGTTGGGTCGGCGCCGGCCCCCTCTTTCCAGCTGGAATCATTGTTCTAACACTAAAATATTAGCACAGAAACTCGATGGAATTTAGGAGATCTTCCCCTCAAGAATTCTGAGTTTTATTTGTTTGGTTGACTTCTGGGTGAGATTAGGAATTTGAACTTTTGACTTATTGGTCGACGTTACGTGTCTAAATTAGTTAACCTATGCTACGTGTCTAAACTAGTTAACCTATGCTCTTGTCAGGTGAAAGTAGAAATTCAAATTTTTGACTTCTTGGTCGATCCTATGTATCTAAACCTGTTGAGCTATACTCTAGTGGGTGAGAGTAGAAATTCAAATCTTTAACTTATTGATTGATCATATGTATCTAAATCAGTTGAACTATGCTTTAGTTGGGAGAGTAAAAATTTGAACATTTGACTTCTTGATCGATCCCATGTATTTGAACCTGTTGAACTATGGTCTAGTGGGTGAGAGTAGAAATTTAAATCTTTGACTTCTAGGTCGATCATATGTATCTAAATCAGTTGAACTCTGCTCTATTTGGTAAGAGTAAAAATTCGAACTTTTGACTTTTTGGCCAATCATACGTATCTAAACCTATTGAACTATGCTCTAGTAAGTGAGAGTAGAAATTCAGATCTTTGACTTCTTGGTCGATCATATGTATCTAAATCAGCTAAACTATGCACTAGTTGACAAGAGCAAAAATTCGAATCTTTGACTTTTCGGCCGATCATACGTAACTAAACCTGTTGAGCTATGTTCCAGTGGATGAGAGTAGAAACTCAGATCTTTGACTTCTTAGTCGATCATATGTATCTAAATCAACTGAACTATGCTATAGTTGACAAAAGTAAAGATTTGAACCTTTGACTTTTCGGCCGATCATATGTATCTAAACTAGTTGACTATTATCTAATTTTGGAAAAATTCTCAAGTCCGAAGTTCATGTCCAGTATGAATTCAGGCTCATAAAATAGACTGTTTATATCATTCCACACCGACTTCACAAGACTCATTTCTTTACACAAGCAGGTGGATTTGTTAGCATAGAATTTGGTTGTCGGGCACAACAAGATTGGTCGGTCTTTACAATATAAGGTTAAGCTTCCCAAACCCAAATTTTATAATCATTAATATATTCTGAGTCAAACATCCTTGATTTGTTATATTCCTCCAAAAGTCAAGGCCTGAAGTCAACCCACCTGATCATGGGAAGCCAAGTTTCTAGTATATAAATGCCTCTGGTTCTTCCATTGTCAGAGCAACTAGCAGCAAAGAGAAGCAAAGGAAGAAGCTGCTGCTGGTGCTAAGTTTTTGGCTATAGAATGATAAGCTTAGCGTTAGGTCGTGGTTCAATGTGCATGGCCACCATTGTCTTCTACACTTGTGTGTGGATCCCTCTGTGTCAACTGAAGATGGCGATCGAAAGCATGATCGGCCTTCTGTCGGGCTGGACGTGTCAGCCGCTCACGACGGAGTCGGCACCGTGGGAGGTAAAACTTCCAATTTGTAGGTTTAAAGAGCTGCAGCGTAGGGGAGGAATGGAGGAGGAGATTTGCTCGGTTTGCTTGGCCGAGTTCACCGGAGACGATTTGGTGAGCCAACTGTACCGATGTAGCCATCTTTTCCATGTAGAATGTATTGAGAATTGGCTACATAGAGATCACTTTACCTGCCCTCTCTGCAGATCCTTCCTCTTCCCAGCATTGTAA

mRNA sequence

ATTCTCATGGGAGCGTTGCAGATGCAATTACAATCTCGCCTTCGAGTTTCGAAGATTTTGTCTTCAACAATTCGGAATTGGGAAAGAGGCTTTCCTCTGCTCCATGATCCATTGCGAACGCCGGATTTGTCACTCTCGCCGGTGGAATCTCGCTGTTTTAGCTCCAATTCCATGGATGACGATTGGAACTTCTCAAGGTCCGAGCCGAGAAGCAGCCCGCCGCAACGACGTTCTCCCCCGGATCCTCGGGAAGCTCGTCGAGTTCCCAAATTCGCCGGGGAAGGATCTGCTCCTTACCCTGAGGACAATCGGAATCAACGGTTTAATAGGCATTCGGAAGGTTCCTCGTCCCGATTCGCAAACGAAGGGCCGATGTCGCGGCGAAGGAATGAGTCTTTGTCTCAGAAGGATTTTAGCTTTCTTGAAAAATTCAAGCTGAACACTGACAATCAGAGTACTAGTACAGAGAAAATCGAGCCGAGCTCTTCTGCTCAGTTTTCTGAATCAATGCAAGGGGAGCAATCGCAACCACAGTGTCCTCCAGAAGCGGATGAGATATTCAGGAAAATGAAGGAAACTGGTCTAATTCCCAACGCTGTTGCTATGCTTGATGGGCTTTGCAAGGATGGGCTTATCCAAGAAGCAATGAAACTATTTGGTTTGATTCGTGAGAAGGGTACAATTCCAGAAGTTGTGGTTTACACTGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGCTTGATGAAGCAATTAGGATTTTCAGGAAAATGCAGAATAATGGCATTTCTCCCAATGCCTTCAGTTACGGCATCTTGATACAGGGACTGTACAAATCCAAACAATTAGAGGATGCCGTATCATTTTGCATTGAGATGTTAGAATCTGGGCATTCTCCAAATCTAACCACTTTTGTCGGCCTAATTGATGAGTTATGCAAAGAAAAGGGGGAGGACGAAGCTCATACTGCCGAGAAGCTTGATGAAGCAATTAGGATTTTCAGGAAAATGCAGAATAATGGCATTTCTCCCAATGCCTTCAGTTACGGCATCTTGATACAGGGACTGTACAAATCCAAACAATTAGAGGATGCCGTATCATTTTGCATTGAGATGTTAGAATCTGGGCATTCTCCAAATCTAACCACTTTTGTCGGCCTAATTGATGAGTTATGCAAAGAAAAGGGGGAGGACGAAGCTCATACTAGCCCCATTTTCTCCACATATCTGGGAACTAATCTTCGGGAAGAAAACGAAGGAATTTTTCTGAGATTCTTGTCGTGGTTAAGAAGTTGTGAAGATACCAATCATGTTACTGAGAAGAAACCGCAAGTGAGAAGAGTGAAGAATATGGATCAGATACACCACCTGGCTTTGGAGAAGAGAATGAGGAAGGAAAGGCCACGTTGCCAGCAAAGAGAAGCAAAGGAAGAAGCTGCTGCTGGTGCTAAAATGATAAGCTTAGCGTTAGGTCGTGGTTCAATGTGCATGGCCACCATTGTCTTCTACACTTGTGTGTGGATCCCTCTGTGTCAACTGAAGATGGCGATCGAAAGCATGATCGGCCTTCTGTCGGGCTGGACGTGTCAGCCGCTCACGACGGAGTCGGCACCGTGGGAGGTAAAACTTCCAATTTGTAGGTTTAAAGAGCTGCAGCGTAGGGGAGGAATGGAGGAGGAGATTTGCTCGGTTTGCTTGGCCGAGTTCACCGGAGACGATTTGGTGAGCCAACTGTACCGATGTAGCCATCTTTTCCATGTAGAATGTATTGAGAATTGGCTACATAGAGATCACTTTACCTGCCCTCTCTGCAGATCCTTCCTCTTCCCAGCATTGTAA

Coding sequence (CDS)

ATTCTCATGGGAGCGTTGCAGATGCAATTACAATCTCGCCTTCGAGTTTCGAAGATTTTGTCTTCAACAATTCGGAATTGGGAAAGAGGCTTTCCTCTGCTCCATGATCCATTGCGAACGCCGGATTTGTCACTCTCGCCGGTGGAATCTCGCTGTTTTAGCTCCAATTCCATGGATGACGATTGGAACTTCTCAAGGTCCGAGCCGAGAAGCAGCCCGCCGCAACGACGTTCTCCCCCGGATCCTCGGGAAGCTCGTCGAGTTCCCAAATTCGCCGGGGAAGGATCTGCTCCTTACCCTGAGGACAATCGGAATCAACGGTTTAATAGGCATTCGGAAGGTTCCTCGTCCCGATTCGCAAACGAAGGGCCGATGTCGCGGCGAAGGAATGAGTCTTTGTCTCAGAAGGATTTTAGCTTTCTTGAAAAATTCAAGCTGAACACTGACAATCAGAGTACTAGTACAGAGAAAATCGAGCCGAGCTCTTCTGCTCAGTTTTCTGAATCAATGCAAGGGGAGCAATCGCAACCACAGTGTCCTCCAGAAGCGGATGAGATATTCAGGAAAATGAAGGAAACTGGTCTAATTCCCAACGCTGTTGCTATGCTTGATGGGCTTTGCAAGGATGGGCTTATCCAAGAAGCAATGAAACTATTTGGTTTGATTCGTGAGAAGGGTACAATTCCAGAAGTTGTGGTTTACACTGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGCTTGATGAAGCAATTAGGATTTTCAGGAAAATGCAGAATAATGGCATTTCTCCCAATGCCTTCAGTTACGGCATCTTGATACAGGGACTGTACAAATCCAAACAATTAGAGGATGCCGTATCATTTTGCATTGAGATGTTAGAATCTGGGCATTCTCCAAATCTAACCACTTTTGTCGGCCTAATTGATGAGTTATGCAAAGAAAAGGGGGAGGACGAAGCTCATACTGCCGAGAAGCTTGATGAAGCAATTAGGATTTTCAGGAAAATGCAGAATAATGGCATTTCTCCCAATGCCTTCAGTTACGGCATCTTGATACAGGGACTGTACAAATCCAAACAATTAGAGGATGCCGTATCATTTTGCATTGAGATGTTAGAATCTGGGCATTCTCCAAATCTAACCACTTTTGTCGGCCTAATTGATGAGTTATGCAAAGAAAAGGGGGAGGACGAAGCTCATACTAGCCCCATTTTCTCCACATATCTGGGAACTAATCTTCGGGAAGAAAACGAAGGAATTTTTCTGAGATTCTTGTCGTGGTTAAGAAGTTGTGAAGATACCAATCATGTTACTGAGAAGAAACCGCAAGTGAGAAGAGTGAAGAATATGGATCAGATACACCACCTGGCTTTGGAGAAGAGAATGAGGAAGGAAAGGCCACGTTGCCAGCAAAGAGAAGCAAAGGAAGAAGCTGCTGCTGGTGCTAAAATGATAAGCTTAGCGTTAGGTCGTGGTTCAATGTGCATGGCCACCATTGTCTTCTACACTTGTGTGTGGATCCCTCTGTGTCAACTGAAGATGGCGATCGAAAGCATGATCGGCCTTCTGTCGGGCTGGACGTGTCAGCCGCTCACGACGGAGTCGGCACCGTGGGAGGTAAAACTTCCAATTTGTAGGTTTAAAGAGCTGCAGCGTAGGGGAGGAATGGAGGAGGAGATTTGCTCGGTTTGCTTGGCCGAGTTCACCGGAGACGATTTGGTGAGCCAACTGTACCGATGTAGCCATCTTTTCCATGTAGAATGTATTGAGAATTGGCTACATAGAGATCACTTTACCTGCCCTCTCTGCAGATCCTTCCTCTTCCCAGCATTGTAA

Protein sequence

ILMGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDWNFSRSEPRSSPPQRRSPPDPREARRVPKFAGEGSAPYPEDNRNQRFNRHSEGSSSRFANEGPMSRRRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGEQSQPQCPPEADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGEDEAHTAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGEDEAHTSPIFSTYLGTNLREENEGIFLRFLSWLRSCEDTNHVTEKKPQVRRVKNMDQIHHLALEKRMRKERPRCQQREAKEEAAAGAKMISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSQLYRCSHLFHVECIENWLHRDHFTCPLCRSFLFPAL

Homology

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BLAST of Cp4.1LG15g06670 vs. Swiss-Prot
Match: PP356_ARATH (Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.0e-60
Identity = 131/227 (57.71%), Postives = 161/227 (70.93%), Query Frame = 1


Query: 98  PYPEDNRNQRFNRHSEGSSSRFANEGPMSRRRNESLSQKDFSFLEKFKLNTDNQSTSTEK 157
           P P  NR  R  R S       A +     + + +LS  D  FLE+FKL  +  S  T K
Sbjct: 46  PEPLPNRPLRGERSSNSHREPPARQAHNLGKSDTTLS--DDGFLEQFKLGVNQDSRETPK 105

Query: 158 IEPSSSAQFSESMQGEQSQPQCPPE-ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAM 217
            E     Q+ +       +P  PPE +DEIF+KMKE GLIPNAVAMLDGLCKDGL+QEAM
Sbjct: 106 PE-----QYPQ-------EPLPPPEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQEAM 165

Query: 218 KLFGLIREKGTIPEVVVYTAVVDGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGL 277
           KLFGL+R+KGTIPEVV+YTAVV+ FCKA K+++A RIFRKMQNNGI+PNAFSYG+L+QGL
Sbjct: 166 KLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGL 225

Query: 278 YKSKQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGEDEAHTA 324
           Y    L+DAV+FC EMLESGHSPN+ TFV L+D LC+ KG ++A +A
Sbjct: 226 YNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQAQSA 258

[Close]

BLAST of Cp4.1LG15g06670 vs. Swiss-Prot
Match: PP440_ARATH (Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-33
Identity = 83/213 (38.97%), Postives = 119/213 (55.87%), Query Frame = 1


Query: 182 EADEIFRKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVV 241
           EA+++F  MK+ G++PN     AM+DG CK G +++A  L+  I     +P VVV+  +V
Sbjct: 252 EAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLV 311

Query: 242 DGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHS 301
           DGFCKA +L  A  +F  M   G+ PN + Y  LI G  KS  + +AV    EM     S
Sbjct: 312 DGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLS 371

Query: 302 PNLTTFVGLIDELCKEKGEDEAHTAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKS 361
           P++ T+  LI+ LC E         +++ EA R+F+KM+N  I P++ +Y  LI G  K 
Sbjct: 372 PDVFTYTILINGLCIE---------DQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKE 431

Query: 362 KQLEDAVSFCIEMLESGHSPNLTTFVGLIDELC 392
             +E A+  C EM  SG  PN+ TF  LID  C
Sbjct: 432 YNMEQALDLCSEMTASGVEPNIITFSTLIDGYC 455

[Close]

BLAST of Cp4.1LG15g06670 vs. Swiss-Prot
Match: PPR12_ARATH (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-32
Identity = 79/236 (33.47%), Postives = 126/236 (53.39%), Query Frame = 1


Query: 182 EADEIFRKMKETGLIPNAVA---MLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVV 241
           EA+E F +M   G++P+ V    ++DG CK G I+ A K F  +  +   P+V+ YTA++
Sbjct: 334 EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 393

Query: 242 DGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHS 301
            GFC+   + EA ++F +M   G+ P++ ++  LI G  K+  ++DA      M+++G S
Sbjct: 394 SGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS 453

Query: 302 PNLTTFVGLIDELCKEKGEDEAHTAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKS 361
           PN+ T+  LID LCKE           LD A  +  +M   G+ PN F+Y  ++ GL KS
Sbjct: 454 PNVVTYTTLIDGLCKE---------GDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 513

Query: 362 KQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGEDEAHTSPIFSTYLGTNLR 415
             +E+AV    E   +G + +  T+  L+D  CK    D+A    I    LG  L+
Sbjct: 514 GNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA--QEILKEMLGKGLQ 558

[Close]

BLAST of Cp4.1LG15g06670 vs. Swiss-Prot
Match: PP247_ARATH (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-31
Identity = 69/221 (31.22%), Postives = 129/221 (58.37%), Query Frame = 1


Query: 182 EADEIFRKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVV 241
           EA E++ +M   G+ P+ +   +++DG CK+  + EA ++F L+  KG  P++V Y+ ++
Sbjct: 333 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILI 392

Query: 242 DGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHS 301
           + +CKA+++D+ +R+FR++ + G+ PN  +Y  L+ G  +S +L  A     EM+  G  
Sbjct: 393 NSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP 452

Query: 302 PNLTTFVGLIDELCKEKGEDEAHTAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKS 361
           P++ T+  L+D LC + GE        L++A+ IF KMQ + ++     Y I+I G+  +
Sbjct: 453 PSVVTYGILLDGLC-DNGE--------LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNA 512

Query: 362 KQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGEDEA 400
            +++DA S    + + G  P++ T+  +I  LCK+    EA
Sbjct: 513 SKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA 544

[Close]

BLAST of Cp4.1LG15g06670 vs. Swiss-Prot
Match: PPR98_ARATH (Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.7e-31
Identity = 71/266 (26.69%), Postives = 141/266 (53.01%), Query Frame = 1


Query: 182 EADEIFRKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVV 241
           EA+++F +M +  + PN V   ++++G C    + EA ++F L+  K  +P+VV Y  ++
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387

Query: 242 DGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHS 301
           +GFCKA+K+ + + +FR M   G+  N  +Y  LI G +++   ++A     +M+  G  
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVH 447

Query: 302 PNLTTFVGLIDELCKEKGEDEAHTAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKS 361
           PN+ T+  L+D LCK           KL++A+ +F  +Q + + P+ ++Y I+ +G+ K+
Sbjct: 448 PNIMTYNTLLDGLCKN---------GKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKA 507

Query: 362 KQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGEDEAHT-------------SPIF 421
            ++ED       +   G  P++  +  +I   CK+  ++EA+T             S  +
Sbjct: 508 GKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTY 567

Query: 422 STYLGTNLREENEGIFLRFLSWLRSC 432
           +T +  +LR+ ++      +  +RSC
Sbjct: 568 NTLIRAHLRDGDKAASAELIKEMRSC 584

[Close]

BLAST of Cp4.1LG15g06670 vs. TrEMBL
Match: A0A0A0K6C0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G029950 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 5.6e-127
Identity = 254/322 (78.88%), Postives = 276/322 (85.71%), Query Frame = 1


Query: 3   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 62
           MGA Q  LQSRL+VSKILSSTIR WE  FPLLH+PLRTPD SL P +SR F+SNSMDDD 
Sbjct: 1   MGAFQ--LQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDH 60

Query: 63  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEGSAPYPEDNRNQRFNRHSEGSSSRFANE 122
            FS SEP ++PPQRR PPD REARRVP+  G  +A Y  DNRNQRFNRHSEGSSSRF NE
Sbjct: 61  AFSDSEPINTPPQRRFPPDHREARRVPR--GGVTASY--DNRNQRFNRHSEGSSSRFTNE 120

Query: 123 GPMSRRRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEP-SSSAQFSESM-QGEQSQPQCP 182
           G  S +R+ESLSQKDFSFLEKFKLNTDNQS+  EK E  SSSA  SESM + +QS+PQ P
Sbjct: 121 GSTSPQRSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRP 180

Query: 183 PEADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDG 242
           PEADEIF KMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVV+YTAVVDG
Sbjct: 181 PEADEIFGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTAVVDG 240

Query: 243 FCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPN 302
           FCKAEK DEAIRIFRKMQ+NGI PNAFS+G+LIQGLYK K+L+DAV+FC EMLESGH PN
Sbjct: 241 FCKAEKFDEAIRIFRKMQHNGIPPNAFSFGVLIQGLYKCKKLDDAVAFCNEMLESGHLPN 300

Query: 303 LTTFVGLIDELCKEKGEDEAHT 323
           LTTFVGLID LC EKG DEAH+
Sbjct: 301 LTTFVGLIDALCNEKGVDEAHS 316

[Close]

BLAST of Cp4.1LG15g06670 vs. TrEMBL
Match: A0A061E1M4_THECC (Pentatricopeptide repeat superfamily protein, putative OS=Theobroma cacao GN=TCM_007614 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.6e-65
Identity = 158/297 (53.20%), Postives = 203/297 (68.35%), Query Frame = 1


Query: 35  HDPLRTPDLSLSPVESRCFSSNSMDDDWNFSRSEPRS--SPPQRRSPPDPREARRVPKFA 94
           H P+     SLS +++R FS    D    F  ++P S  S      PP+P     +P  +
Sbjct: 21  HHPILGSPPSLSLLQTRLFS----DMRGPFRDNDPISFNSNGDGDKPPEP-----IPNRS 80

Query: 95  GEGSAPY-PEDNRNQRFNRHSEGSS-----SRFANEGPMSRRRNESLSQKDFSFLEKFKL 154
            EG  P+ P     +    +S GSS     ++FA++   +R+R +S  Q D +FLEKFKL
Sbjct: 81  LEGQRPFNPSFRETKGATLNSNGSSFQSFNTKFASDP--NRKREDS--QSDENFLEKFKL 140

Query: 155 NTDNQSTSTEKIEPSSSAQFSESMQGEQSQPQCPPE-ADEIFRKMKETGLIPNAVAMLDG 214
             DN+       +PS S   +   + EQ +   PP+ ADEIF+KMKETGLIPNAVAMLDG
Sbjct: 141 GLDNKRGK----QPSDSEAAALLRRKEQEEKPSPPQDADEIFKKMKETGLIPNAVAMLDG 200

Query: 215 LCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKLDEAIRIFRKMQNNGISPN 274
           LCKDGLIQEAMKLFG +REKGTIPEVV+YTAVVDGFCKA KLD+A RIFRKMQ+ G++PN
Sbjct: 201 LCKDGLIQEAMKLFGSMREKGTIPEVVIYTAVVDGFCKAHKLDDAKRIFRKMQSKGVTPN 260

Query: 275 AFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGEDEAHT 323
           +FSY +LIQGLY+  +L+DA+ FC+EMLE+GHSPN+TTFVGL+D LCKEKG +EA +
Sbjct: 261 SFSYIVLIQGLYRCNKLDDAIEFCLEMLEAGHSPNVTTFVGLVDGLCKEKGVEEAQS 300

[Close]

BLAST of Cp4.1LG15g06670 vs. TrEMBL
Match: A0A0L9UQY6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g042700 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.3e-64
Identity = 142/260 (54.62%), Postives = 182/260 (70.00%), Query Frame = 1


Query: 70  RSSPPQRRSPPDPREARRV---PKFAGEGSAPYPEDNRNQRFNRHSEGSSSRFANEGPMS 129
           RS  P  + PP  RE+ RV   P+F     AP   DN N+        S    A +G   
Sbjct: 97  RSRKPINQPPPRFRESGRVSIPPRFDDSHGAPGALDNSNK-------SSKIDLAFQGTNG 156

Query: 130 RRRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSE-SMQGEQSQPQCPPEADE 189
              N  L Q   SFL+KFKL  D+++ +  ++  S  ++ ++ S    ++Q   P +ADE
Sbjct: 157 AETNRDLGQSGDSFLDKFKLAFDDKTVNQSEVAASMQSEEAKWSDSNSKAQEPVPQDADE 216

Query: 190 IFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAE 249
           IF+KMKETGLIPNAVAMLDGLCKDGL+QEA+KLFGL+REKGTIPE+V+YTAVV+G+ K +
Sbjct: 217 IFKKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGLMREKGTIPEIVIYTAVVEGYTKVD 276

Query: 250 KLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFV 309
           K D+A RIFRKMQ++GISPNAFSY +LIQGLYK ++L+DA  FC+EMLE+GHSPN+TTFV
Sbjct: 277 KADDAKRIFRKMQSSGISPNAFSYTVLIQGLYKCRRLQDAFEFCVEMLEAGHSPNVTTFV 336

Query: 310 GLIDELCKEKGEDEAHTAEK 326
           GL+D  CKEKG +EA  A K
Sbjct: 337 GLVDGFCKEKGVEEAKDAIK 349

[Close]

BLAST of Cp4.1LG15g06670 vs. TrEMBL
Match: A0A0S3T4T7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G168100 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.3e-64
Identity = 142/260 (54.62%), Postives = 182/260 (70.00%), Query Frame = 1


Query: 70  RSSPPQRRSPPDPREARRV---PKFAGEGSAPYPEDNRNQRFNRHSEGSSSRFANEGPMS 129
           RS  P  + PP  RE+ RV   P+F     AP   DN N+        S    A +G   
Sbjct: 100 RSRKPINQPPPRFRESGRVSIPPRFDDSHGAPGALDNSNK-------SSKIDLAFQGTNG 159

Query: 130 RRRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSE-SMQGEQSQPQCPPEADE 189
              N  L Q   SFL+KFKL  D+++ +  ++  S  ++ ++ S    ++Q   P +ADE
Sbjct: 160 AETNRDLGQSGDSFLDKFKLAFDDKTVNQSEVAASMQSEEAKWSDSNSKAQEPVPQDADE 219

Query: 190 IFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAE 249
           IF+KMKETGLIPNAVAMLDGLCKDGL+QEA+KLFGL+REKGTIPE+V+YTAVV+G+ K +
Sbjct: 220 IFKKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGLMREKGTIPEIVIYTAVVEGYTKVD 279

Query: 250 KLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFV 309
           K D+A RIFRKMQ++GISPNAFSY +LIQGLYK ++L+DA  FC+EMLE+GHSPN+TTFV
Sbjct: 280 KADDAKRIFRKMQSSGISPNAFSYTVLIQGLYKCRRLQDAFEFCVEMLEAGHSPNVTTFV 339

Query: 310 GLIDELCKEKGEDEAHTAEK 326
           GL+D  CKEKG +EA  A K
Sbjct: 340 GLVDGFCKEKGVEEAKDAIK 352

[Close]

BLAST of Cp4.1LG15g06670 vs. TrEMBL
Match: V4S9S2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028759mg PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 6.8e-64
Identity = 142/253 (56.13%), Postives = 182/253 (71.94%), Query Frame = 1


Query: 78  SPPDPREARRVPKFAGEGSAPYPEDNRNQR-----FNRHSEGSSSRFANEGPMSRRRNES 137
           +PP+P     +P     G  P+   N+N+R     FN + +    +  +    +R R +S
Sbjct: 54  NPPEP-----IPDRPLRGERPFTNQNQNRRSFQPRFNNYQQQQRPQQQSFQSPNRPRPKS 113

Query: 138 LS--QKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGEQ-SQPQCPPEADEIFRK 197
               Q D +FL++FKL  D +  + ++ E     Q  +  + E  S+P  P EADEIF+K
Sbjct: 114 PDGVQSDENFLDQFKLAIDKKPDNPQQNESLGERQEQKPNRNEPISEP--PQEADEIFKK 173

Query: 198 MKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKLDE 257
           MKETGLIPNAVAMLDGLCKDGLIQEAMKLFGL+REKGTIPEVV+YTAVVDGFCKA+K D+
Sbjct: 174 MKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDD 233

Query: 258 AIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFVGLID 317
           A RIFRKMQ+NGI+PNAFSY +LIQGLYK  +LE+AV +CIEMLE+GHSPN+TTFVGL+D
Sbjct: 234 AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 293

Query: 318 ELCKEKGEDEAHT 323
            LC+EKG ++A +
Sbjct: 294 GLCREKGVEKAQS 299

[Close]

BLAST of Cp4.1LG15g06670 vs. TAIR10
Match: AT4G38150.1 (AT4G38150.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 236.1 bits (601), Expect = 5.7e-62
Identity = 131/227 (57.71%), Postives = 161/227 (70.93%), Query Frame = 1


Query: 98  PYPEDNRNQRFNRHSEGSSSRFANEGPMSRRRNESLSQKDFSFLEKFKLNTDNQSTSTEK 157
           P P  NR  R  R S       A +     + + +LS  D  FLE+FKL  +  S  T K
Sbjct: 46  PEPLPNRPLRGERSSNSHREPPARQAHNLGKSDTTLS--DDGFLEQFKLGVNQDSRETPK 105

Query: 158 IEPSSSAQFSESMQGEQSQPQCPPE-ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAM 217
            E     Q+ +       +P  PPE +DEIF+KMKE GLIPNAVAMLDGLCKDGL+QEAM
Sbjct: 106 PE-----QYPQ-------EPLPPPEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQEAM 165

Query: 218 KLFGLIREKGTIPEVVVYTAVVDGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGL 277
           KLFGL+R+KGTIPEVV+YTAVV+ FCKA K+++A RIFRKMQNNGI+PNAFSYG+L+QGL
Sbjct: 166 KLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGL 225

Query: 278 YKSKQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGEDEAHTA 324
           Y    L+DAV+FC EMLESGHSPN+ TFV L+D LC+ KG ++A +A
Sbjct: 226 YNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQAQSA 258

[Close]

BLAST of Cp4.1LG15g06670 vs. TAIR10
Match: AT5G61400.1 (AT5G61400.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 145.6 bits (366), Expect = 1.0e-34
Identity = 83/213 (38.97%), Postives = 119/213 (55.87%), Query Frame = 1


Query: 182 EADEIFRKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVV 241
           EA+++F  MK+ G++PN     AM+DG CK G +++A  L+  I     +P VVV+  +V
Sbjct: 252 EAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLV 311

Query: 242 DGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHS 301
           DGFCKA +L  A  +F  M   G+ PN + Y  LI G  KS  + +AV    EM     S
Sbjct: 312 DGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLS 371

Query: 302 PNLTTFVGLIDELCKEKGEDEAHTAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKS 361
           P++ T+  LI+ LC E         +++ EA R+F+KM+N  I P++ +Y  LI G  K 
Sbjct: 372 PDVFTYTILINGLCIE---------DQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKE 431

Query: 362 KQLEDAVSFCIEMLESGHSPNLTTFVGLIDELC 392
             +E A+  C EM  SG  PN+ TF  LID  C
Sbjct: 432 YNMEQALDLCSEMTASGVEPNIITFSTLIDGYC 455

[Close]

BLAST of Cp4.1LG15g06670 vs. TAIR10
Match: AT1G05670.1 (AT1G05670.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 142.5 bits (358), Expect = 8.5e-34
Identity = 79/236 (33.47%), Postives = 126/236 (53.39%), Query Frame = 1


Query: 182 EADEIFRKMKETGLIPNAVA---MLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVV 241
           EA+E F +M   G++P+ V    ++DG CK G I+ A K F  +  +   P+V+ YTA++
Sbjct: 334 EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 393

Query: 242 DGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHS 301
            GFC+   + EA ++F +M   G+ P++ ++  LI G  K+  ++DA      M+++G S
Sbjct: 394 SGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS 453

Query: 302 PNLTTFVGLIDELCKEKGEDEAHTAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKS 361
           PN+ T+  LID LCKE           LD A  +  +M   G+ PN F+Y  ++ GL KS
Sbjct: 454 PNVVTYTTLIDGLCKE---------GDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 513

Query: 362 KQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGEDEAHTSPIFSTYLGTNLR 415
             +E+AV    E   +G + +  T+  L+D  CK    D+A    I    LG  L+
Sbjct: 514 GNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA--QEILKEMLGKGLQ 558

[Close]

BLAST of Cp4.1LG15g06670 vs. TAIR10
Match: AT3G22470.1 (AT3G22470.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 139.4 bits (350), Expect = 7.2e-33
Identity = 69/221 (31.22%), Postives = 129/221 (58.37%), Query Frame = 1


Query: 182 EADEIFRKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVV 241
           EA E++ +M   G+ P+ +   +++DG CK+  + EA ++F L+  KG  P++V Y+ ++
Sbjct: 333 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILI 392

Query: 242 DGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHS 301
           + +CKA+++D+ +R+FR++ + G+ PN  +Y  L+ G  +S +L  A     EM+  G  
Sbjct: 393 NSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP 452

Query: 302 PNLTTFVGLIDELCKEKGEDEAHTAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKS 361
           P++ T+  L+D LC + GE        L++A+ IF KMQ + ++     Y I+I G+  +
Sbjct: 453 PSVVTYGILLDGLC-DNGE--------LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNA 512

Query: 362 KQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGEDEA 400
            +++DA S    + + G  P++ T+  +I  LCK+    EA
Sbjct: 513 SKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA 544

[Close]

BLAST of Cp4.1LG15g06670 vs. TAIR10
Match: AT1G63080.1 (AT1G63080.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 137.9 bits (346), Expect = 2.1e-32
Identity = 71/266 (26.69%), Postives = 141/266 (53.01%), Query Frame = 1


Query: 182 EADEIFRKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVV 241
           EA+++F +M +  + PN V   ++++G C    + EA ++F L+  K  +P+VV Y  ++
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387

Query: 242 DGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHS 301
           +GFCKA+K+ + + +FR M   G+  N  +Y  LI G +++   ++A     +M+  G  
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVH 447

Query: 302 PNLTTFVGLIDELCKEKGEDEAHTAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKS 361
           PN+ T+  L+D LCK           KL++A+ +F  +Q + + P+ ++Y I+ +G+ K+
Sbjct: 448 PNIMTYNTLLDGLCKN---------GKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKA 507

Query: 362 KQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGEDEAHT-------------SPIF 421
            ++ED       +   G  P++  +  +I   CK+  ++EA+T             S  +
Sbjct: 508 GKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTY 567

Query: 422 STYLGTNLREENEGIFLRFLSWLRSC 432
           +T +  +LR+ ++      +  +RSC
Sbjct: 568 NTLIRAHLRDGDKAASAELIKEMRSC 584

[Close]

BLAST of Cp4.1LG15g06670 vs. NCBI nr
Match: gi|659124148|ref|XP_008462006.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis melo])

HSP 1 Score: 463.4 bits (1191), Expect = 6.2e-127
Identity = 251/315 (79.68%), Postives = 268/315 (85.08%), Query Frame = 1


Query: 9   QLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDWNFSRSE 68
           Q QSRL+VSKILSS+IR WE  FPLLH+PLRTPD SLSP  SR FSSNSMDDD  FS SE
Sbjct: 5   QFQSRLQVSKILSSSIRKWEIDFPLLHNPLRTPDFSLSPAPSRRFSSNSMDDDRAFSESE 64

Query: 69  PRSSPPQRRSPPDPREARRVPKFAGEGSAPYPEDNRNQRFNRHSEGSSSRFANEGPMSRR 128
           PR++PPQRR PPD REARRVP+    G      DNRNQRFNRHSEGSSSRF NEG  SR+
Sbjct: 65  PRNTPPQRRFPPDHREARRVPR----GGVTDSYDNRNQRFNRHSEGSSSRFTNEGSTSRQ 124

Query: 129 RNESLSQKDFSFLEKFKLNTDNQSTSTEKIEP-SSSAQFSESMQG-EQSQPQCPPEADEI 188
           R+ESLSQKDFSFLEKFKLNTDNQS+  EK E  SSSA  SESMQ  +QSQ Q PP ADEI
Sbjct: 125 RSESLSQKDFSFLEKFKLNTDNQSSGNEKTEENSSSAPVSESMQEKQQSQHQRPPAADEI 184

Query: 189 FRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEK 248
           FRKMKE+GLIPNAVAMLDGLCKDGLIQEAMKLF LIREKGTIPEVV+YTAVVDGFCKAEK
Sbjct: 185 FRKMKESGLIPNAVAMLDGLCKDGLIQEAMKLFALIREKGTIPEVVIYTAVVDGFCKAEK 244

Query: 249 LDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFVG 308
            DEAIRIFRKMQN GISPNAFS+G+LIQGLYK K+L+DAV+FC EMLESGH PNLTTFVG
Sbjct: 245 FDEAIRIFRKMQNKGISPNAFSFGVLIQGLYKCKKLDDAVAFCNEMLESGHLPNLTTFVG 304

Query: 309 LIDELCKEKGEDEAH 322
           LID LC EKG DEAH
Sbjct: 305 LIDVLCSEKGVDEAH 315

[Close]

BLAST of Cp4.1LG15g06670 vs. NCBI nr
Match: gi|449453638|ref|XP_004144563.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis sativus])

HSP 1 Score: 463.0 bits (1190), Expect = 8.1e-127
Identity = 254/322 (78.88%), Postives = 276/322 (85.71%), Query Frame = 1


Query: 3   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 62
           MGA Q  LQSRL+VSKILSSTIR WE  FPLLH+PLRTPD SL P +SR F+SNSMDDD 
Sbjct: 1   MGAFQ--LQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDH 60

Query: 63  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEGSAPYPEDNRNQRFNRHSEGSSSRFANE 122
            FS SEP ++PPQRR PPD REARRVP+  G  +A Y  DNRNQRFNRHSEGSSSRF NE
Sbjct: 61  AFSDSEPINTPPQRRFPPDHREARRVPR--GGVTASY--DNRNQRFNRHSEGSSSRFTNE 120

Query: 123 GPMSRRRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEP-SSSAQFSESM-QGEQSQPQCP 182
           G  S +R+ESLSQKDFSFLEKFKLNTDNQS+  EK E  SSSA  SESM + +QS+PQ P
Sbjct: 121 GSTSPQRSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRP 180

Query: 183 PEADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDG 242
           PEADEIF KMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVV+YTAVVDG
Sbjct: 181 PEADEIFGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTAVVDG 240

Query: 243 FCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPN 302
           FCKAEK DEAIRIFRKMQ+NGI PNAFS+G+LIQGLYK K+L+DAV+FC EMLESGH PN
Sbjct: 241 FCKAEKFDEAIRIFRKMQHNGIPPNAFSFGVLIQGLYKCKKLDDAVAFCNEMLESGHLPN 300

Query: 303 LTTFVGLIDELCKEKGEDEAHT 323
           LTTFVGLID LC EKG DEAH+
Sbjct: 301 LTTFVGLIDALCNEKGVDEAHS 316

[Close]

BLAST of Cp4.1LG15g06670 vs. NCBI nr
Match: gi|590689066|ref|XP_007043123.1| (Pentatricopeptide repeat superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 257.7 bits (657), Expect = 5.2e-65
Identity = 158/297 (53.20%), Postives = 203/297 (68.35%), Query Frame = 1


Query: 35  HDPLRTPDLSLSPVESRCFSSNSMDDDWNFSRSEPRS--SPPQRRSPPDPREARRVPKFA 94
           H P+     SLS +++R FS    D    F  ++P S  S      PP+P     +P  +
Sbjct: 21  HHPILGSPPSLSLLQTRLFS----DMRGPFRDNDPISFNSNGDGDKPPEP-----IPNRS 80

Query: 95  GEGSAPY-PEDNRNQRFNRHSEGSS-----SRFANEGPMSRRRNESLSQKDFSFLEKFKL 154
            EG  P+ P     +    +S GSS     ++FA++   +R+R +S  Q D +FLEKFKL
Sbjct: 81  LEGQRPFNPSFRETKGATLNSNGSSFQSFNTKFASDP--NRKREDS--QSDENFLEKFKL 140

Query: 155 NTDNQSTSTEKIEPSSSAQFSESMQGEQSQPQCPPE-ADEIFRKMKETGLIPNAVAMLDG 214
             DN+       +PS S   +   + EQ +   PP+ ADEIF+KMKETGLIPNAVAMLDG
Sbjct: 141 GLDNKRGK----QPSDSEAAALLRRKEQEEKPSPPQDADEIFKKMKETGLIPNAVAMLDG 200

Query: 215 LCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKLDEAIRIFRKMQNNGISPN 274
           LCKDGLIQEAMKLFG +REKGTIPEVV+YTAVVDGFCKA KLD+A RIFRKMQ+ G++PN
Sbjct: 201 LCKDGLIQEAMKLFGSMREKGTIPEVVIYTAVVDGFCKAHKLDDAKRIFRKMQSKGVTPN 260

Query: 275 AFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGEDEAHT 323
           +FSY +LIQGLY+  +L+DA+ FC+EMLE+GHSPN+TTFVGL+D LCKEKG +EA +
Sbjct: 261 SFSYIVLIQGLYRCNKLDDAIEFCLEMLEAGHSPNVTTFVGLVDGLCKEKGVEEAQS 300

[Close]

BLAST of Cp4.1LG15g06670 vs. NCBI nr
Match: gi|965614481|dbj|BAU00114.1| (hypothetical protein VIGAN_10168100 [Vigna angularis var. angularis])

HSP 1 Score: 255.0 bits (650), Expect = 3.4e-64
Identity = 142/260 (54.62%), Postives = 182/260 (70.00%), Query Frame = 1


Query: 70  RSSPPQRRSPPDPREARRV---PKFAGEGSAPYPEDNRNQRFNRHSEGSSSRFANEGPMS 129
           RS  P  + PP  RE+ RV   P+F     AP   DN N+        S    A +G   
Sbjct: 100 RSRKPINQPPPRFRESGRVSIPPRFDDSHGAPGALDNSNK-------SSKIDLAFQGTNG 159

Query: 130 RRRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSE-SMQGEQSQPQCPPEADE 189
              N  L Q   SFL+KFKL  D+++ +  ++  S  ++ ++ S    ++Q   P +ADE
Sbjct: 160 AETNRDLGQSGDSFLDKFKLAFDDKTVNQSEVAASMQSEEAKWSDSNSKAQEPVPQDADE 219

Query: 190 IFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAE 249
           IF+KMKETGLIPNAVAMLDGLCKDGL+QEA+KLFGL+REKGTIPE+V+YTAVV+G+ K +
Sbjct: 220 IFKKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGLMREKGTIPEIVIYTAVVEGYTKVD 279

Query: 250 KLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFV 309
           K D+A RIFRKMQ++GISPNAFSY +LIQGLYK ++L+DA  FC+EMLE+GHSPN+TTFV
Sbjct: 280 KADDAKRIFRKMQSSGISPNAFSYTVLIQGLYKCRRLQDAFEFCVEMLEAGHSPNVTTFV 339

Query: 310 GLIDELCKEKGEDEAHTAEK 326
           GL+D  CKEKG +EA  A K
Sbjct: 340 GLVDGFCKEKGVEEAKDAIK 352

[Close]

BLAST of Cp4.1LG15g06670 vs. NCBI nr
Match: gi|920701896|gb|KOM45121.1| (hypothetical protein LR48_Vigan06g042700 [Vigna angularis])

HSP 1 Score: 255.0 bits (650), Expect = 3.4e-64
Identity = 142/260 (54.62%), Postives = 182/260 (70.00%), Query Frame = 1


Query: 70  RSSPPQRRSPPDPREARRV---PKFAGEGSAPYPEDNRNQRFNRHSEGSSSRFANEGPMS 129
           RS  P  + PP  RE+ RV   P+F     AP   DN N+        S    A +G   
Sbjct: 97  RSRKPINQPPPRFRESGRVSIPPRFDDSHGAPGALDNSNK-------SSKIDLAFQGTNG 156

Query: 130 RRRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSE-SMQGEQSQPQCPPEADE 189
              N  L Q   SFL+KFKL  D+++ +  ++  S  ++ ++ S    ++Q   P +ADE
Sbjct: 157 AETNRDLGQSGDSFLDKFKLAFDDKTVNQSEVAASMQSEEAKWSDSNSKAQEPVPQDADE 216

Query: 190 IFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAE 249
           IF+KMKETGLIPNAVAMLDGLCKDGL+QEA+KLFGL+REKGTIPE+V+YTAVV+G+ K +
Sbjct: 217 IFKKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGLMREKGTIPEIVIYTAVVEGYTKVD 276

Query: 250 KLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFV 309
           K D+A RIFRKMQ++GISPNAFSY +LIQGLYK ++L+DA  FC+EMLE+GHSPN+TTFV
Sbjct: 277 KADDAKRIFRKMQSSGISPNAFSYTVLIQGLYKCRRLQDAFEFCVEMLEAGHSPNVTTFV 336

Query: 310 GLIDELCKEKGEDEAHTAEK 326
           GL+D  CKEKG +EA  A K
Sbjct: 337 GLVDGFCKEKGVEEAKDAIK 349

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g06670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP356_ARATH	1.0e-60	57.71	Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN...	[more]
PP440_ARATH	1.8e-33	38.97	Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana GN...	[more]
PPR12_ARATH	1.5e-32	33.47	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop...	[more]
PP247_ARATH	1.3e-31	31.22	Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop...	[more]
PPR98_ARATH	3.7e-31	26.69	Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidop...	[more]

BLAST of Cp4.1LG15g06670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6C0_CUCSA	5.6e-127	78.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G029950 PE=4 SV=1	[more]
A0A061E1M4_THECC	3.6e-65	53.20	Pentatricopeptide repeat superfamily protein, putative OS=Theobroma cacao GN=TCM...	[more]
A0A0L9UQY6_PHAAN	2.3e-64	54.62	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g042700 PE=4 SV=1	[more]
A0A0S3T4T7_PHAAN	2.3e-64	54.62	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G168100 PE=...	[more]
V4S9S2_9ROSI	6.8e-64	56.13	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028759mg PE=4 SV=1	[more]

BLAST of Cp4.1LG15g06670 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38150.1	5.7e-62	57.71	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G61400.1	1.0e-34	38.97	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G05670.1	8.5e-34	33.47	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G22470.1	7.2e-33	31.22	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G63080.1	2.1e-32	26.69	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Cp4.1LG15g06670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124148\|ref\|XP_008462006.1\|	6.2e-127	79.68	PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis melo]	[more]
gi\|449453638\|ref\|XP_004144563.1\|	8.1e-127	78.88	PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis sativu...	[more]
gi\|590689066\|ref\|XP_007043123.1\|	5.2e-65	53.20	Pentatricopeptide repeat superfamily protein, putative [Theobroma cacao]	[more]
gi\|965614481\|dbj\|BAU00114.1\|	3.4e-64	54.62	hypothetical protein VIGAN_10168100 [Vigna angularis var. angularis]	[more]
gi\|920701896\|gb\|KOM45121.1\|	3.4e-64	54.62	hypothetical protein LR48_Vigan06g042700 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR002885	Pentatricopeptide_repeat
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0030117	membrane coat
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008565	protein transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g06670.1	Cp4.1LG15g06670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 561..604 score: 3.7
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 561..603 score: 3.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 561..604 score: 12
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 201..226 score: 1.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 323..357 score: 4.5E-9coord: 229..278 score: 1.6
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 201..229 score: 1.5E-4coord: 232..266 score: 3.4E-10coord: 267..300 score: 2.0E-5coord: 346..379 score: 2.0E-5coord: 325..345 score: 0.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 344..378 score: 10.676coord: 195..229 score: 8.583coord: 230..264 score: 13.154coord: 300..343 score: 6.675coord: 265..299 score: 10
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 557..604 score: 1.9
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 66..520 score: 5.6E
None	No IPR available	PANTHER	PTHR24015:SF337	SUBFAMILY NOT NAMED	coord: 66..520 score: 5.6E
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 556..609 score: 4.71
None	No IPR available	unknown	SSF81901	HCP-like	coord: 234..376 score: 8.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG15g06670	Cucsa.100010	Cucumber (Gy14) v1	cgycpeB0206
Cp4.1LG15g06670	Cucsa.120020	Cucumber (Gy14) v1	cgycpeB0287
Cp4.1LG15g06670	CmaCh11G012950	Cucurbita maxima (Rimu)	cmacpeB117
Cp4.1LG15g06670	CmaCh19G008270	Cucurbita maxima (Rimu)	cmacpeB522
Cp4.1LG15g06670	CmoCh19G008440	Cucurbita moschata (Rifu)	cmocpeB481
Cp4.1LG15g06670	Cla015716	Watermelon (97103) v1	cpewmB268
Cp4.1LG15g06670	Csa7G029950	Cucumber (Chinese Long) v2	cpecuB257
Cp4.1LG15g06670	Csa6G117180	Cucumber (Chinese Long) v2	cpecuB250
Cp4.1LG15g06670	MELO3C024166	Melon (DHL92) v3.5.1	cpemeB223
Cp4.1LG15g06670	MELO3C013477	Melon (DHL92) v3.5.1	cpemeB213
Cp4.1LG15g06670	ClCG02G003160	Watermelon (Charleston Gray)	cpewcgB233
Cp4.1LG15g06670	CSPI06G09520	Wild cucumber (PI 183967)	cpecpiB251
Cp4.1LG15g06670	CSPI07G02380	Wild cucumber (PI 183967)	cpecpiB257
Cp4.1LG15g06670	Lsi10G000170	Bottle gourd (USVL1VR-Ls)	cpelsiB194
Cp4.1LG15g06670	Lsi11G013190	Bottle gourd (USVL1VR-Ls)	cpelsiB199
Cp4.1LG15g06670	MELO3C024166.2	Melon (DHL92) v3.6.1	cpemedB261
Cp4.1LG15g06670	CsaV3_7G002250	Cucumber (Chinese Long) v3	cpecucB0322
Cp4.1LG15g06670	Bhi05G001326	Wax gourd	cpewgoB0326
Cp4.1LG15g06670	CsGy7G002090	Cucumber (Gy14) v2	cgybcpeB910
Cp4.1LG15g06670	Carg18080	Silver-seed gourd	carcpeB1480
Cp4.1LG15g06670	Carg04123	Silver-seed gourd	carcpeB0281

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG15g06670	Cp4.1LG04g04240	Cucurbita pepo (Zucchini)	cpecpeB272
Cp4.1LG15g06670	Cp4.1LG05g13300	Cucurbita pepo (Zucchini)	cpecpeB280

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG15g06670	Cucumber (Gy14) v2	cgybcpeB751
Cp4.1LG15g06670	Silver-seed gourd	carcpeB0484
Cp4.1LG15g06670	Silver-seed gourd	carcpeB1189
Cp4.1LG15g06670	Silver-seed gourd	carcpeB1481
Cp4.1LG15g06670	Cucumber (Chinese Long) v3	cpecucB0316
Cp4.1LG15g06670	Wax gourd	cpewgoB0336
Cp4.1LG15g06670	Cucurbita pepo (Zucchini)	cpecpeB255
Cp4.1LG15g06670	Cucurbita pepo (Zucchini)	cpecpeB267
Cp4.1LG15g06670	Cucurbita maxima (Rimu)	cmacpeB118
Cp4.1LG15g06670	Cucurbita maxima (Rimu)	cmacpeB560
Cp4.1LG15g06670	Cucurbita maxima (Rimu)	cmacpeB613
Cp4.1LG15g06670	Cucurbita moschata (Rifu)	cmocpeB098
Cp4.1LG15g06670	Cucurbita moschata (Rifu)	cmocpeB093
Cp4.1LG15g06670	Cucurbita moschata (Rifu)	cmocpeB513
Cp4.1LG15g06670	Cucurbita moschata (Rifu)	cmocpeB562