MELO3C024166 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024166
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ring finger protein, putative
Location	chr1 : 4532883 .. 4533335 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAACCAACAAAAAAAAGAAATAGAAGAAGGGGGCTGCTGGTCTTGAGTTTTTGGCAGAATAATGATAGGTATGGCATTATGTAGAGGTTCAATGTCCATGGCCACCGTTGTCTTCTTAACTTGTGTGTGGATCCCTTTGAGCCAACTGAAGGCAGCCATTGCGAGCATGTTTGACATTCTATCGGGTCGAACATGTCCGATGCTCACGACAATACCGTGTGAGGTGAAACTTCTGGTTTGTAGGTTCGAAGAGCTGCAGCGTGGGGTTGGATCGGAGGAGGAAATTTGCTCCGTTTGCTTGACGGAGTTCACCAGAGAACATTTGGTGAGCCAAATGCATAGATGTAGCCATGTTTTCCATCTAGAATGTATTGAGAGTTGGCTACAAAGAAACCGATTTACCTGCCCTCTCTGCAGATCCTTCATTGTCCAAGTATTGTGAATCTTTTAG

mRNA sequence

AGAAACCAACAAAAAAAAGAAATAGAAGAAGGGGGCTGCTGGTCTTGAGTTTTTGGCAGAATAATGATAGGTATGGCATTATGTAGAGGTTCAATGTCCATGGCCACCGTTGTCTTCTTAACTTGTGTGTGGATCCCTTTGAGCCAACTGAAGGCAGCCATTGCGAGCATGTTTGACATTCTATCGGGTCGAACATGTCCGATGCTCACGACAATACCGTGTGAGGTGAAACTTCTGGTTTGTAGGTTCGAAGAGCTGCAGCGTGGGGTTGGATCGGAGGAGGAAATTTGCTCCGTTTGCTTGACGGAGTTCACCAGAGAACATTTGGTGAGCCAAATGCATAGATGTAGCCATGTTTTCCATCTAGAATGTATTGAGAGTTGGCTACAAAGAAACCGATTTACCTGCCCTCTCTGCAGATCCTTCATTGTCCAAGTATTGTGAATCTTTTAG

Coding sequence (CDS)

ATGATAGGTATGGCATTATGTAGAGGTTCAATGTCCATGGCCACCGTTGTCTTCTTAACTTGTGTGTGGATCCCTTTGAGCCAACTGAAGGCAGCCATTGCGAGCATGTTTGACATTCTATCGGGTCGAACATGTCCGATGCTCACGACAATACCGTGTGAGGTGAAACTTCTGGTTTGTAGGTTCGAAGAGCTGCAGCGTGGGGTTGGATCGGAGGAGGAAATTTGCTCCGTTTGCTTGACGGAGTTCACCAGAGAACATTTGGTGAGCCAAATGCATAGATGTAGCCATGTTTTCCATCTAGAATGTATTGAGAGTTGGCTACAAAGAAACCGATTTACCTGCCCTCTCTGCAGATCCTTCATTGTCCAAGTATTGTGA

Protein sequence

MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFIVQVL*

Homology

[Close]

BLAST of MELO3C024166 vs. Swiss-Prot
Match: ATL18_ARATH (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.1e-15
Identity = 47/125 (37.60%), Postives = 60/125 (48.00%), Query Frame = 1


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLK--AAIASMFDILSGRTCPMLTTIPCEVKLL 60
           MI M   R  +  A +VF TCV IPL +LK     A   D                  L+
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLKKNGGDADAHD-------------DDGYNLV 60

Query: 61  VCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLC 120
              F + ++    EE  C +CL EF  E  V+ + RC+H+FH+ CIE WL R   TCPLC
Sbjct: 61  GVMFGDKEK---EEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLC 109

Query: 121 RSFIV 124
           RSF++
Sbjct: 121 RSFVL 109

[Close]

BLAST of MELO3C024166 vs. Swiss-Prot
Match: ATL16_ARATH (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 1


Query: 68  GVGSEEEI-----CSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS 121
           G G EEE      CSVCL+EF  E  +  +  CSH+FH++CI+ WLQ N   CPLCR+
Sbjct: 125 GEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNA-NCPLCRT 181

[Close]

BLAST of MELO3C024166 vs. Swiss-Prot
Match: ATL46_ARATH (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-08
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 1


Query: 68  GVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCR 120
           G   E   C+VCL EF+ +  +  +  CSH FHL CI++WLQ N  TCPLCR
Sbjct: 135 GAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNS-TCPLCR 185

[Close]

BLAST of MELO3C024166 vs. Swiss-Prot
Match: ATL50_ARATH (Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana GN=ATL50 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-08
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 1


Query: 76  CSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCR 120
           C+VCL EFT E  +  + +CSH FH+ECI++WL  N  TCPLCR
Sbjct: 122 CAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNS-TCPLCR 164

[Close]

BLAST of MELO3C024166 vs. Swiss-Prot
Match: ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-08
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 1


Query: 72  EEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFIV 124
           E   CSVCL+EF     +  + +C+H FH+ CI++WL ++   CPLCR+FIV
Sbjct: 155 ESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWL-KSHSNCPLCRAFIV 205

[Close]

BLAST of MELO3C024166 vs. TrEMBL
Match: A0A0A0K513_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G029960 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.6e-61
Identity = 116/128 (90.62%), Postives = 122/128 (95.31%), Query Frame = 1


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLT--TIPCEVKLL 60
           MIGMALCRGSMSMAT+VFLTCVWIPLSQLKAAI+SMFDILSGRTC MLT  ++PCEVKLL
Sbjct: 29  MIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLL 88

Query: 61  VCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLC 120
           VCRFEELQR VGSEEEICSVCLTEFTREHLVSQ+HRCSHVFHLECIESWLQRN+FTCPLC
Sbjct: 89  VCRFEELQRAVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLC 148

Query: 121 RSFIVQVL 127
           RSFI Q L
Sbjct: 149 RSFIFQPL 156

[Close]

BLAST of MELO3C024166 vs. TrEMBL
Match: A0A0D2SLB9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G215300 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-22
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 1


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVC 60
           MI +         A ++F TCVWIP  Q K  + S+   +  R+C  +      V L V 
Sbjct: 1   MISLVCSNSGSCTAALIFYTCVWIPFIQFKIFVLSLLGFVFPRSCGTIN-----VSLPVA 60

Query: 61  RFEELQRGVG----SEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCP 120
           RFE+L+   G    +EEE+CS+CL EF  +  VSQ+ +C HVFH+ CIE W++R  FTCP
Sbjct: 61  RFEDLKFSAGCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFTCP 120

Query: 121 LCRSFI 123
           LCRS +
Sbjct: 121 LCRSVL 121

[Close]

BLAST of MELO3C024166 vs. TrEMBL
Match: I3T767_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 57/124 (45.97%), Postives = 75/124 (60.48%), Query Frame = 1


Query: 7   CRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQ 66
           C+  + + T+VF TC+ IPL +LK A+AS+F + S      L  I     L V RFE+L+
Sbjct: 7   CQSQLWVVTIVFYTCILIPLKELKGALASLFGLFSKDVVEFLAVIS---SLPVARFEDLR 66

Query: 67  RGVGSE--------EEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLC 123
           R    E        E+ICS+CL EF  E  VS++ R  HVFHL CIE WL R +F+CPLC
Sbjct: 67  RQCCCEGGDDDELREKICSICLVEFEGEDAVSKLERRGHVFHLNCIEQWLDRCQFSCPLC 126

[Close]

BLAST of MELO3C024166 vs. TrEMBL
Match: A0A0B2QNV8_GLYSO (RING-H2 finger protein ATL18 OS=Glycine soja GN=glysoja_030196 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 56/121 (46.28%), Postives = 80/121 (66.12%), Query Frame = 1


Query: 6   LCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTI--PCEVKLLVCRFE 65
           +C+  + + T+VF TC+ IPL +LK A+ASMF + S  T  M   +  P    L V R+E
Sbjct: 6   VCQSRLWVVTIVFYTCILIPLMKLKRALASMF-LFSCETKGMAKEMEFPEIPSLPVARYE 65

Query: 66  ELQ--RGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSF 123
           +L+     G ++EICS+CL E+  E  VS++ RC HVFHL CI+ W+ RN+F+CPLCRSF
Sbjct: 66  DLKGHNCDGEKQEICSICLVEYEGEDAVSKLGRCGHVFHLNCIDQWILRNQFSCPLCRSF 125

[Close]

BLAST of MELO3C024166 vs. TrEMBL
Match: K7N2N2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G099800 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 56/121 (46.28%), Postives = 80/121 (66.12%), Query Frame = 1


Query: 6   LCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTI--PCEVKLLVCRFE 65
           +C+  + + T+VF TC+ IPL +LK A+ASMF + S  T  M   +  P    L V R+E
Sbjct: 6   VCQSRLWVVTIVFYTCILIPLMKLKRALASMF-LFSCETKGMAKEMEFPEIPSLPVARYE 65

Query: 66  ELQ--RGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSF 123
           +L+     G ++EICS+CL E+  E  VS++ RC HVFHL CI+ W+ RN+F+CPLCRSF
Sbjct: 66  DLKGHNCDGEKQEICSICLVEYEGEDAVSKLGRCGHVFHLNCIDQWILRNQFSCPLCRSF 125

[Close]

BLAST of MELO3C024166 vs. TAIR10
Match: AT4G38140.1 (AT4G38140.1 RING/U-box superfamily protein)

HSP 1 Score: 82.0 bits (201), Expect = 2.9e-16
Identity = 47/125 (37.60%), Postives = 60/125 (48.00%), Query Frame = 1


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLK--AAIASMFDILSGRTCPMLTTIPCEVKLL 60
           MI M   R  +  A +VF TCV IPL +LK     A   D                  L+
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLKKNGGDADAHD-------------DDGYNLV 60

Query: 61  VCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLC 120
              F + ++    EE  C +CL EF  E  V+ + RC+H+FH+ CIE WL R   TCPLC
Sbjct: 61  GVMFGDKEK---EEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLC 109

Query: 121 RSFIV 124
           RSF++
Sbjct: 121 RSFVL 109

[Close]

BLAST of MELO3C024166 vs. TAIR10
Match: AT3G61460.1 (AT3G61460.1 brassinosteroid-responsive RING-H2)

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-10
Identity = 26/64 (40.62%), Postives = 35/64 (54.69%), Query Frame = 1


Query: 57  LLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCP 116
           L V +FEEL        E C+VCL EF  E  +  +  C H+FH  C++ W+  ++ TCP
Sbjct: 75  LPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHDQKTCP 134

Query: 117 LCRS 121
           LCR+
Sbjct: 135 LCRT 138

[Close]

BLAST of MELO3C024166 vs. TAIR10
Match: AT4G33565.1 (AT4G33565.1 RING/U-box superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 5.2e-10
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 1


Query: 43  RTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLE 102
           RT  +  T+   +K  VC++ +    V   +  CSVCL+EF  E  +  + +C H FHL 
Sbjct: 188 RTIGLNPTVISSIK--VCQYSKKDGVVEGTD--CSVCLSEFEEEETLRLLPKCKHAFHLY 247

Query: 103 CIESWLQRNRFTCPLCRSFIVQ 125
           CI++WL R+   CPLCR+ IV+
Sbjct: 248 CIDTWL-RSHTNCPLCRAPIVE 264

[Close]

BLAST of MELO3C024166 vs. TAIR10
Match: AT5G43420.1 (AT5G43420.1 RING/U-box superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 8.9e-10
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 1


Query: 68  GVGSEEEI-----CSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS 121
           G G EEE      CSVCL+EF  E  +  +  CSH+FH++CI+ WLQ N   CPLCR+
Sbjct: 125 GEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNA-NCPLCRT 181

[Close]

BLAST of MELO3C024166 vs. TAIR10
Match: AT4G00305.1 (AT4G00305.1 RING/U-box superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 31/83 (37.35%), Postives = 44/83 (53.01%), Query Frame = 1


Query: 41  SGRTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFH 100
           SG T  ++  IP +  L   +FE++   V   E  C +C  EF     V  +  C HV+H
Sbjct: 39  SGST--IIDKIPMDDMLPATKFEDISSRVNPPES-CRICQDEFDGGDEVRCLRNCVHVYH 98

Query: 101 LECIESWLQRNRFTCPLCRSFIV 124
             CI+ W+Q ++ TCPLCR+ IV
Sbjct: 99  KTCIDRWIQDDKMTCPLCRTPIV 118

[Close]

BLAST of MELO3C024166 vs. NCBI nr
Match: gi|659124152|ref|XP_008462008.1| (PREDICTED: RING-H2 finger protein ATL18-like [Cucumis melo])

HSP 1 Score: 262.7 bits (670), Expect = 3.3e-67
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVC 60
           MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVC
Sbjct: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVC 60

Query: 61  RFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS 120
           RFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS
Sbjct: 61  RFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS 120

Query: 121 FIVQVL 127
           FIVQVL
Sbjct: 121 FIVQVL 126

[Close]

BLAST of MELO3C024166 vs. NCBI nr
Match: gi|700188149|gb|KGN43382.1| (hypothetical protein Csa_7G029960 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 8.0e-61
Identity = 116/128 (90.62%), Postives = 122/128 (95.31%), Query Frame = 1


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLT--TIPCEVKLL 60
           MIGMALCRGSMSMAT+VFLTCVWIPLSQLKAAI+SMFDILSGRTC MLT  ++PCEVKLL
Sbjct: 29  MIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLL 88

Query: 61  VCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLC 120
           VCRFEELQR VGSEEEICSVCLTEFTREHLVSQ+HRCSHVFHLECIESWLQRN+FTCPLC
Sbjct: 89  VCRFEELQRAVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLC 148

Query: 121 RSFIVQVL 127
           RSFI Q L
Sbjct: 149 RSFIFQPL 156

[Close]

BLAST of MELO3C024166 vs. NCBI nr
Match: gi|702457888|ref|XP_010027388.1| (PREDICTED: RING-H2 finger protein ATL18 [Eucalyptus grandis])

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-23
Identity = 53/132 (40.15%), Postives = 84/132 (63.64%), Query Frame = 1


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVC 60
           M  +   +  +S A ++F TC+W+PL QL+ A++ +   +  +  P  ++  C  +L V 
Sbjct: 1   MYCLVYAQSGVSTAMLIFYTCMWLPLMQLRIAVSRVLAFVFCKYQPQESS--CSFQLPVG 60

Query: 61  RFEELQRGVGSEEE-------ICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRF 120
           RF++LQ+  G EE+        CS+CL ++  EHLVS++HRC HVFH++CIE WL+R++F
Sbjct: 61  RFQDLQKSGGEEEKEDGDHEKTCSICLVDYEGEHLVSKLHRCGHVFHMDCIERWLERSQF 120

Query: 121 TCPLCRSFIVQV 126
           TCPLCR  +  V
Sbjct: 121 TCPLCRKLVFDV 130

[Close]

BLAST of MELO3C024166 vs. NCBI nr
Match: gi|823162649|ref|XP_012481249.1| (PREDICTED: RING-H2 finger protein ATL18-like [Gossypium raimondii])

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-22
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 1


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVC 60
           MI +         A ++F TCVWIP  Q K  + S+   +  R+C  +      V L V 
Sbjct: 1   MISLVCSNSGSCTAALIFYTCVWIPFIQFKIFVLSLLGFVFPRSCGTIN-----VSLPVA 60

Query: 61  RFEELQRGVG----SEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCP 120
           RFE+L+   G    +EEE+CS+CL EF  +  VSQ+ +C HVFH+ CIE W++R  FTCP
Sbjct: 61  RFEDLKFSAGCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFTCP 120

Query: 121 LCRSFI 123
           LCRS +
Sbjct: 121 LCRSVL 121

[Close]

BLAST of MELO3C024166 vs. NCBI nr
Match: gi|502121374|ref|XP_004497292.1| (PREDICTED: RING-H2 finger protein ATL18-like [Cicer arietinum])

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-22
Identity = 57/134 (42.54%), Postives = 80/134 (59.70%), Query Frame = 1


Query: 6   LCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLL------- 65
           +C+  M + T+VF TCV IPL QLK ++A+MF ++      ++    CE K +       
Sbjct: 6   VCKSRMWILTIVFYTCVLIPLMQLKMSLANMFGVI------LMFLFSCETKCIAKEMEFP 65

Query: 66  ------VCRFEELQR----GVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWL 123
                 V RF +L+     G G  +EICS+CL EF   + VS++ RC HVFH  CIE WL
Sbjct: 66  EISSLPVARFNDLRGHGGDGDGDGDEICSICLVEFEGGNAVSKLRRCGHVFHFNCIEQWL 125

The following BLAST results are available for this feature:

BLAST of MELO3C024166 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL18_ARATH	5.1e-15	37.60	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1	[more]
ATL16_ARATH	1.6e-08	50.00	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1	[more]
ATL46_ARATH	2.7e-08	50.00	RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1	[more]
ATL50_ARATH	2.7e-08	56.82	Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana GN=ATL50 PE=3 SV=1	[more]
ATL51_ARATH	3.5e-08	46.15	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2	[more]

BLAST of MELO3C024166 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K513_CUCSA	5.6e-61	90.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G029960 PE=4 SV=1	[more]
A0A0D2SLB9_GOSRA	1.0e-22	42.06	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G215300 PE=4 SV=1	[more]
I3T767_LOTJA	1.1e-21	45.97	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A0B2QNV8_GLYSO	1.9e-21	46.28	RING-H2 finger protein ATL18 OS=Glycine soja GN=glysoja_030196 PE=4 SV=1	[more]
K7N2N2_SOYBN	1.9e-21	46.28	Uncharacterized protein OS=Glycine max GN=GLYMA_20G099800 PE=4 SV=1	[more]

BLAST of MELO3C024166 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38140.1	2.9e-16	37.60	RING/U-box superfamily protein	[more]
AT3G61460.1	2.3e-10	40.63	brassinosteroid-responsive RING-H2	[more]
AT4G33565.1	5.2e-10	39.02	RING/U-box superfamily protein	[more]
AT5G43420.1	8.9e-10	50.00	RING/U-box superfamily protein	[more]
AT4G00305.1	1.2e-09	37.35	RING/U-box superfamily protein	[more]

BLAST of MELO3C024166 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124152\|ref\|XP_008462008.1\|	3.3e-67	100.00	PREDICTED: RING-H2 finger protein ATL18-like [Cucumis melo]	[more]
gi\|700188149\|gb\|KGN43382.1\|	8.0e-61	90.63	hypothetical protein Csa_7G029960 [Cucumis sativus]	[more]
gi\|702457888\|ref\|XP_010027388.1\|	1.3e-23	40.15	PREDICTED: RING-H2 finger protein ATL18 [Eucalyptus grandis]	[more]
gi\|823162649\|ref\|XP_012481249.1\|	1.5e-22	42.06	PREDICTED: RING-H2 finger protein ATL18-like [Gossypium raimondii]	[more]
gi\|502121374\|ref\|XP_004497292.1\|	1.9e-22	42.54	PREDICTED: RING-H2 finger protein ATL18-like [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024166T1	MELO3C024166T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 76..119 score: 1.7
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 76..118 score: 7.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 76..119 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 72..120 score: 5.8
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 57..123 score: 1.2
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 70..124 score: 2.31

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C024166	Csa6G117180	Cucumber (Chinese Long) v2	cumeB461
MELO3C024166	Csa7G029960	Cucumber (Chinese Long) v2	cumeB530
MELO3C024166	Cla015716	Watermelon (97103) v1	mewmB241
MELO3C024166	ClCG02G003160	Watermelon (Charleston Gray)	mewcgB195
MELO3C024166	Cla97C02G029670	Watermelon (97103) v2	mewmbB178
MELO3C024166	CSPI07G02390	Wild cucumber (PI 183967)	cpimeB538
MELO3C024166	CSPI06G09520	Wild cucumber (PI 183967)	cpimeB457
MELO3C024166	Cucsa.120020	Cucumber (Gy14) v1	cgymeB183
MELO3C024166	CmaCh20G006910	Cucurbita maxima (Rimu)	cmameB516
MELO3C024166	CmaCh11G012960	Cucurbita maxima (Rimu)	cmameB100
MELO3C024166	CmoCh19G008450	Cucurbita moschata (Rifu)	cmomeB452
MELO3C024166	Lsi10G000170	Bottle gourd (USVL1VR-Ls)	lsimeB067
MELO3C024166	Cp4.1LG15g06670	Cucurbita pepo (Zucchini)	cpemeB223
MELO3C024166	Carg16111	Silver-seed gourd	carmeB0355

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
MELO3C024166	MELO3C013477	Melon (DHL92) v3.5.1	memeB041

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024166	Wax gourd	mewgoB212
MELO3C024166	Cucumber (Gy14) v1	cgymeB121
MELO3C024166	Cucurbita maxima (Rimu)	cmameB461
MELO3C024166	Cucurbita pepo (Zucchini)	cpemeB606
MELO3C024166	Silver-seed gourd	carmeB0199
MELO3C024166	Cucumber (Chinese Long) v3	cucmeB548