Csa7G029960 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G029960
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRING finger family protein; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)
LocationChr7 : 1589132 .. 1590873 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAATATGGAAGAGACACCGCCATCTGGCTTTAGAGAGGAGAATGAGAAAGAAATCCCACGTTGCAAGGTACCCGTTTATTTTAAAGCTAAGGCACAACTCATCAGATATATATTGTATTTTGTTTAGAGGAGTATGGATGATTTGGTCGGTATTATTCTATCTTGAACTGCAAGTTTAGTCAAAACCTGGGAAGGGAGGTGGATTCTCTTGTTTCCTTATTGTTAATTGTTATTAGAAGTGAAATATTAAGATATGAATGGAAGATTTTGGTATCTCATGTGAATATTTTAGATACTTGAGGCATTGACTAACTTATGAAGTATTGAGTGCAATGTGGGGTCGGCGCCGGCCCTCCTTTCCAGCCGGAATCATGGTTCTAACACACTAAAATATTAACAAACGCATTGGATTTTAGGAAATCTTCTCCTTACGAGTTTTGAGATCCTTTTTTTCCTTTTTATTTTACAAAAAGTTCAATAACAACATGTGAGAGGTGAGTGAAAGTGGTGATTTAAACCTTTGACTTTTGATCAATAGTTATCTAGTTGAGCTATTGTTGGTAGAATTTTGAGGTTAGTAGAGATATTTTACCTTTCTAATTATTAATTATTAAATTTATAGGCTTTACAAATTTAAGTACATTAAATCAATCATTTGCATTATTGCACACTTGACTTTACAAACAATAAACTCTTTTCTAAGCACAAGCCGATAGGGGTGTTCACATTCATTTTGGTTTGGCAACCAAACCAAACCGAAAATTTTAGTTTTGGATACACACCAAACCGGATCGATTATTTGGTTGGAACCTTAAATATTTTATCTGATTTTCTTCTATTAGCATACAGTAAATTTATGTACTTTGGTTCCACTTTTAGCATCATATAAACAATTCAGTTTGGTTTACAAATCCAAAAACCAATCAAACAAAATTTTGATTTTCTTACAATTTAAAATCTAATTGAACCAACTTCAGTTAAAAATGAATTTCTGATTCGATTCAATTTGATTTGATTGCATGGAGTAAACAACCCTACAAGCAGGTAGATTTATTAGCACAGAGTCAGGTTGTTGGGTACAGCAAGATTAGTCAGTAATATATGGTTTTTCATCTTTACAAATATAAAATTAAGCTTTGCAAACCCAATATTTATAAATCCCATAATATATTATGAGTCAAATATCCTTGATTGGTTATATTCCTCCAAAAGTCAAGGCCTGAAGTCAACCACCACCTGAATATGGTAAGCCAAGTTTGTACTATAAAAATGCCTTTGCTTCTTCCATTTTTCAGAAACCAACAAAAAGGAGAAATAGAAGAAGAAGCTGCTGGTCTTGTGTGTTTTGGCAGAATGATAGGCATGGCATTATGCAGAGGTTCAATGTCCATGGCCACCATTGTCTTCTTAACTTGTGTGTGGATCCCTTTGAGCCAACTGAAGGCAGCCATTTCGAGCATGTTCGACATTCTATCGGGTCGAACGTGTCAGATGCTCACGACAGCGTCGCTGCCATGTGAGGTAAAACTTCTGGTTTGTAGGTTCGAAGAGCTGCAGCGTGCAGTTGGATCAGAGGAGGAAATTTGCTCTGTTTGCTTGACGGAGTTCACCAGAGAGCATTTGGTGAGCCAATTGCATAGATGTAGCCATGTTTTCCACCTAGAATGTATTGAGAGTTGGCTACAAAGAAACCAATTTACCTGCCCTCTCTGCAGATCCTTCATCTTCCAACCATTGTGA

mRNA sequence

ATGAGAAAGAAATCCCACGTTGCAAGAAACCAACAAAAAGGAGAAATAGAAGAAGAAGCTGCTGGTCTTGTGTGTTTTGGCAGAATGATAGGCATGGCATTATGCAGAGGTTCAATGTCCATGGCCACCATTGTCTTCTTAACTTGTGTGTGGATCCCTTTGAGCCAACTGAAGGCAGCCATTTCGAGCATGTTCGACATTCTATCGGGTCGAACGTGTCAGATGCTCACGACAGCGTCGCTGCCATGTGAGGTAAAACTTCTGGTTTGTAGGTTCGAAGAGCTGCAGCGTGCAGTTGGATCAGAGGAGGAAATTTGCTCTGTTTGCTTGACGGAGTTCACCAGAGAGCATTTGGTGAGCCAATTGCATAGATGTAGCCATGTTTTCCACCTAGAATGTATTGAGAGTTGGCTACAAAGAAACCAATTTACCTGCCCTCTCTGCAGATCCTTCATCTTCCAACCATTGTGA

Coding sequence (CDS)

ATGAGAAAGAAATCCCACGTTGCAAGAAACCAACAAAAAGGAGAAATAGAAGAAGAAGCTGCTGGTCTTGTGTGTTTTGGCAGAATGATAGGCATGGCATTATGCAGAGGTTCAATGTCCATGGCCACCATTGTCTTCTTAACTTGTGTGTGGATCCCTTTGAGCCAACTGAAGGCAGCCATTTCGAGCATGTTCGACATTCTATCGGGTCGAACGTGTCAGATGCTCACGACAGCGTCGCTGCCATGTGAGGTAAAACTTCTGGTTTGTAGGTTCGAAGAGCTGCAGCGTGCAGTTGGATCAGAGGAGGAAATTTGCTCTGTTTGCTTGACGGAGTTCACCAGAGAGCATTTGGTGAGCCAATTGCATAGATGTAGCCATGTTTTCCACCTAGAATGTATTGAGAGTTGGCTACAAAGAAACCAATTTACCTGCCCTCTCTGCAGATCCTTCATCTTCCAACCATTGTGA

Protein sequence

MRKKSHVARNQQKGEIEEEAAGLVCFGRMIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLLVCRFEELQRAVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLCRSFIFQPL*
Homology
[Close]
BLAST of Csa7G029960 vs. Swiss-Prot
Match: ATL18_ARATH (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.6e-16
Identity = 49/127 (38.58%), Postives = 59/127 (46.46%), Query Frame = 1 

Query: 29  MIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLL 88
           MI M   R  +  A IVF TCV IPL +LK                    A       L+
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLKKNGGD-------------ADAHDDDGYNLV 60

Query: 89  VCRFEELQRAVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLC 148
              F + ++    EE  C +CL EF  E  V+ L RC+H+FH+ CIE WL R   TCPLC
Sbjct: 61  GVMFGDKEK---EEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLC 111

Query: 149 RSFIFQP 156
           RSF+  P
Sbjct: 121 RSFVLAP 111

[Close]
BLAST of Csa7G029960 vs. Swiss-Prot
Match: ATL46_ARATH (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 1 

Query: 106 CSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLCRSFIFQP 156
           C+VCL EF+ +  +  L  CSH FHL CI++WLQ N  TCPLCR  +F P
Sbjct: 143 CAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNS-TCPLCRGTLFSP 191

[Close]
BLAST of Csa7G029960 vs. Swiss-Prot
Match: RHA1B_ARATH (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 1 

Query: 77  TTASLPCEVKLLVCRFEELQRAVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIES 136
           T+A+L  E+ + V RF +L   +   E+ C+VCL++F  +  + QL +C HVFH  C++ 
Sbjct: 60  TSATLANEL-IPVVRFSDL---LTDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDR 119

Query: 137 WL-QRNQFTCPLCRS 151
           W+   N+ TCP+CR+
Sbjct: 120 WIVDCNKITCPICRN 130

[Close]
BLAST of Csa7G029960 vs. Swiss-Prot
Match: ATL50_ARATH (Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana GN=ATL50 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 1 

Query: 106 CSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLCR 150
           C+VCL EFT E  +  L +CSH FH+ECI++WL  N  TCPLCR
Sbjct: 122 CAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNS-TCPLCR 164

[Close]
BLAST of Csa7G029960 vs. Swiss-Prot
Match: ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-08
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 

Query: 106 CSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLCRSFIF 154
           C+VCL EF+ +  +  L  CSH FH++CI++WL  N  TCPLCR  +F
Sbjct: 144 CAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNS-TCPLCRGTLF 190

[Close]
BLAST of Csa7G029960 vs. TrEMBL
Match: A0A0A0K513_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G029960 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 6.8e-85
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MRKKSHVARNQQKGEIEEEAAGLVCFGRMIGMALCRGSMSMATIVFLTCVWIPLSQLKAA 60
           MRKKSHVARNQQKGEIEEEAAGLVCFGRMIGMALCRGSMSMATIVFLTCVWIPLSQLKAA
Sbjct: 1   MRKKSHVARNQQKGEIEEEAAGLVCFGRMIGMALCRGSMSMATIVFLTCVWIPLSQLKAA 60

Query: 61  ISSMFDILSGRTCQMLTTASLPCEVKLLVCRFEELQRAVGSEEEICSVCLTEFTREHLVS 120
           ISSMFDILSGRTCQMLTTASLPCEVKLLVCRFEELQRAVGSEEEICSVCLTEFTREHLVS
Sbjct: 61  ISSMFDILSGRTCQMLTTASLPCEVKLLVCRFEELQRAVGSEEEICSVCLTEFTREHLVS 120

Query: 121 QLHRCSHVFHLECIESWLQRNQFTCPLCRSFIFQPL 157
           QLHRCSHVFHLECIESWLQRNQFTCPLCRSFIFQPL
Sbjct: 121 QLHRCSHVFHLECIESWLQRNQFTCPLCRSFIFQPL 156

[Close]
BLAST of Csa7G029960 vs. TrEMBL
Match: A0A0B2QNV8_GLYSO (RING-H2 finger protein ATL18 OS=Glycine soja GN=glysoja_030196 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.9e-24
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 1 

Query: 34  LCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLLVCRFE 93
           +C+  + + TIVF TC+ IPL +LK A++SMF + S  T  M      P    L V R+E
Sbjct: 6   VCQSRLWVVTIVFYTCILIPLMKLKRALASMF-LFSCETKGMAKEMEFPEIPSLPVARYE 65

Query: 94  ELQ--RAVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLCRSF 153
           +L+     G ++EICS+CL E+  E  VS+L RC HVFHL CI+ W+ RNQF+CPLCRSF
Sbjct: 66  DLKGHNCDGEKQEICSICLVEYEGEDAVSKLGRCGHVFHLNCIDQWILRNQFSCPLCRSF 125

[Close]
BLAST of Csa7G029960 vs. TrEMBL
Match: K7N2N2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G099800 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.9e-24
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 1 

Query: 34  LCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLLVCRFE 93
           +C+  + + TIVF TC+ IPL +LK A++SMF + S  T  M      P    L V R+E
Sbjct: 6   VCQSRLWVVTIVFYTCILIPLMKLKRALASMF-LFSCETKGMAKEMEFPEIPSLPVARYE 65

Query: 94  ELQ--RAVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLCRSF 153
           +L+     G ++EICS+CL E+  E  VS+L RC HVFHL CI+ W+ RNQF+CPLCRSF
Sbjct: 66  DLKGHNCDGEKQEICSICLVEYEGEDAVSKLGRCGHVFHLNCIDQWILRNQFSCPLCRSF 125

[Close]
BLAST of Csa7G029960 vs. TrEMBL
Match: W9QLH5_9ROSA (RING-H2 finger protein ATL18 OS=Morus notabilis GN=L484_013757 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-23
Identity = 64/132 (48.48%), Postives = 81/132 (61.36%), Query Frame = 1 

Query: 29  MIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILS---GRTCQMLTTASLPCEV 88
           MI + + +    +ATIVF TCVWIPL QLK A+S +  ++S    R    +TT++   E 
Sbjct: 1   MIFLVVSQSHFCVATIVFYTCVWIPLLQLKKALSGILGMVSFIYQRPLMDITTSNTAAEP 60

Query: 89  KLLVCRFEEL------QRAVGSE-EEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWL 148
            L V RF +L      QR  G   EE CS+CL EF  + +VSQL +C HVFH+ CIE WL
Sbjct: 61  WLPVSRFVDLPGRGTCQRRSGQTMEESCSICLAEFEEQDVVSQLSKCGHVFHMNCIEKWL 120

Query: 149 QRNQFTCPLCRS 151
             NQFTCPLCRS
Sbjct: 121 DCNQFTCPLCRS 132

[Close]
BLAST of Csa7G029960 vs. TrEMBL
Match: A0A0B2RYS6_GLYSO (RING-H2 finger protein ATL18 OS=Glycine soja GN=glysoja_013554 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 60/122 (49.18%), Postives = 78/122 (63.93%), Query Frame = 1 

Query: 34  LCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLLVCRFE 93
           +C+  + + +IVF TC+ IPL QLK A++SM  + S  T  M      P    L V RFE
Sbjct: 6   VCQSRLWVVSIVFYTCILIPLMQLKKALASMV-LFSCETKGMAKEMEFPEIPSLPVARFE 65

Query: 94  ELQ--RAVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLCRSF 153
           +L+       +EEICS+CL E+  E  VS+L RC HVFHL CIE W+ RNQF+CPLCRSF
Sbjct: 66  DLKGHNCDEEKEEICSICLVEYEGEDAVSKLGRCGHVFHLNCIEQWILRNQFSCPLCRSF 125

[Close]
BLAST of Csa7G029960 vs. TAIR10
Match: AT4G38140.1 (AT4G38140.1 RING/U-box superfamily protein)

HSP 1 Score: 84.7 bits (208), Expect = 5.4e-17
Identity = 49/127 (38.58%), Postives = 59/127 (46.46%), Query Frame = 1 

Query: 29  MIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLL 88
           MI M   R  +  A IVF TCV IPL +LK                    A       L+
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLKKNGGD-------------ADAHDDDGYNLV 60

Query: 89  VCRFEELQRAVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLC 148
              F + ++    EE  C +CL EF  E  V+ L RC+H+FH+ CIE WL R   TCPLC
Sbjct: 61  GVMFGDKEK---EEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLC 111

Query: 149 RSFIFQP 156
           RSF+  P
Sbjct: 121 RSFVLAP 111

[Close]
BLAST of Csa7G029960 vs. TAIR10
Match: AT3G61460.1 (AT3G61460.1 brassinosteroid-responsive RING-H2)

HSP 1 Score: 65.1 bits (157), Expect = 4.5e-11
Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 1 

Query: 87  LLVCRFEELQRAVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCP 146
           L V +FEEL  +     E C+VCL EF  E  +  L  C H+FH  C++ W+  +Q TCP
Sbjct: 75  LPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHDQKTCP 134

Query: 147 LCRS 151
           LCR+
Sbjct: 135 LCRT 138

[Close]
BLAST of Csa7G029960 vs. TAIR10
Match: AT5G41400.1 (AT5G41400.1 RING/U-box superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 5.8e-11
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1 

Query: 87  LLVCRFEELQR-AVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQ-RNQFT 146
           L V RF EL R   GS  + C+VCL EF  +  + +L  C H+FH  C++ W+   NQ T
Sbjct: 85  LPVIRFSELTRPGFGSGSDCCAVCLHEFENDDEIRRLTNCQHIFHRSCLDRWMMGYNQMT 144

Query: 147 CPLCRS 151
           CPLCR+
Sbjct: 145 CPLCRT 150

[Close]
BLAST of Csa7G029960 vs. TAIR10
Match: AT5G40250.1 (AT5G40250.1 RING/U-box superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 7.6e-11
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 1 

Query: 106 CSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLCRSFIFQP 156
           C+VCL EF+ +  +  L  CSH FHL CI++WLQ N  TCPLCR  +F P
Sbjct: 143 CAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNS-TCPLCRGTLFSP 191

[Close]
BLAST of Csa7G029960 vs. TAIR10
Match: AT5G57750.1 (AT5G57750.1 RING/U-box superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-10
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 1 

Query: 106 CSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLCR 150
           C+VCL EFT E  +  L +CSH FH+ECI++WL  N  TCPLCR
Sbjct: 122 CAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNS-TCPLCR 164

[Close]
BLAST of Csa7G029960 vs. NCBI nr
Match: gi|700188149|gb|KGN43382.1| (hypothetical protein Csa_7G029960 [Cucumis sativus])

HSP 1 Score: 321.2 bits (822), Expect = 9.8e-85
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MRKKSHVARNQQKGEIEEEAAGLVCFGRMIGMALCRGSMSMATIVFLTCVWIPLSQLKAA 60
           MRKKSHVARNQQKGEIEEEAAGLVCFGRMIGMALCRGSMSMATIVFLTCVWIPLSQLKAA
Sbjct: 1   MRKKSHVARNQQKGEIEEEAAGLVCFGRMIGMALCRGSMSMATIVFLTCVWIPLSQLKAA 60

Query: 61  ISSMFDILSGRTCQMLTTASLPCEVKLLVCRFEELQRAVGSEEEICSVCLTEFTREHLVS 120
           ISSMFDILSGRTCQMLTTASLPCEVKLLVCRFEELQRAVGSEEEICSVCLTEFTREHLVS
Sbjct: 61  ISSMFDILSGRTCQMLTTASLPCEVKLLVCRFEELQRAVGSEEEICSVCLTEFTREHLVS 120

Query: 121 QLHRCSHVFHLECIESWLQRNQFTCPLCRSFIFQPL 157
           QLHRCSHVFHLECIESWLQRNQFTCPLCRSFIFQPL
Sbjct: 121 QLHRCSHVFHLECIESWLQRNQFTCPLCRSFIFQPL 156

[Close]
BLAST of Csa7G029960 vs. NCBI nr
Match: gi|659124152|ref|XP_008462008.1| (PREDICTED: RING-H2 finger protein ATL18-like [Cucumis melo])

HSP 1 Score: 243.0 bits (619), Expect = 3.4e-61
Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 29  MIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLL 88
           MIGMALCRGSMSMAT+VFLTCVWIPLSQLKAAI+SMFDILSGRTC MLTT  +PCEVKLL
Sbjct: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT--IPCEVKLL 60

Query: 89  VCRFEELQRAVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLC 148
           VCRFEELQR VGSEEEICSVCLTEFTREHLVSQ+HRCSHVFHLECIESWLQRN+FTCPLC
Sbjct: 61  VCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLC 120

Query: 149 RSFIFQPL 157
           RSFI Q L
Sbjct: 121 RSFIVQVL 126

[Close]
BLAST of Csa7G029960 vs. NCBI nr
Match: gi|702457888|ref|XP_010027388.1| (PREDICTED: RING-H2 finger protein ATL18 [Eucalyptus grandis])

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 58/132 (43.94%), Postives = 85/132 (64.39%), Query Frame = 1 

Query: 29  MIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLL 88
           M  +   +  +S A ++F TC+W+PL QL+ A+S    +L+   C+     S  C  +L 
Sbjct: 1   MYCLVYAQSGVSTAMLIFYTCMWLPLMQLRIAVSR---VLAFVFCKYQPQES-SCSFQLP 60

Query: 89  VCRFEELQRAVGSEEE-------ICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRN 148
           V RF++LQ++ G EE+        CS+CL ++  EHLVS+LHRC HVFH++CIE WL+R+
Sbjct: 61  VGRFQDLQKSGGEEEKEDGDHEKTCSICLVDYEGEHLVSKLHRCGHVFHMDCIERWLERS 120

Query: 149 QFTCPLCRSFIF 154
           QFTCPLCR  +F
Sbjct: 121 QFTCPLCRKLVF 128

[Close]
BLAST of Csa7G029960 vs. NCBI nr
Match: gi|734381234|gb|KHN23136.1| (RING-H2 finger protein ATL18 [Glycine soja])

HSP 1 Score: 119.4 bits (298), Expect = 5.6e-24
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 1 

Query: 34  LCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLLVCRFE 93
           +C+  + + TIVF TC+ IPL +LK A++SMF + S  T  M      P    L V R+E
Sbjct: 6   VCQSRLWVVTIVFYTCILIPLMKLKRALASMF-LFSCETKGMAKEMEFPEIPSLPVARYE 65

Query: 94  ELQ--RAVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLCRSF 153
           +L+     G ++EICS+CL E+  E  VS+L RC HVFHL CI+ W+ RNQF+CPLCRSF
Sbjct: 66  DLKGHNCDGEKQEICSICLVEYEGEDAVSKLGRCGHVFHLNCIDQWILRNQFSCPLCRSF 125

[Close]
BLAST of Csa7G029960 vs. NCBI nr
Match: gi|645260631|ref|XP_008235919.1| (PREDICTED: RING-H2 finger protein ATL18 [Prunus mume])

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 59/131 (45.04%), Postives = 83/131 (63.36%), Query Frame = 1 

Query: 29  MIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLL 88
           MI + + + S+SMATI F TC WIPL ++K A++ +   +   TC++       C   L 
Sbjct: 1   MICLMVSQSSLSMATIFFYTCFWIPLLRMKRALARLVGFVFFFTCKVEQEEDQMC---LP 60

Query: 89  VCRFEELQR----AVGSE--EEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQ 148
           V RF++LQ       G E  EE CS+CL EF +E +VSQL +C HVFH++CIE W++R+ 
Sbjct: 61  VARFQDLQDHGCLRCGQEALEETCSICLVEFEKEDVVSQLSKCGHVFHMDCIERWIERSH 120

Query: 149 FTCPLCRSFIF 154
           FTCP+CRS  F
Sbjct: 121 FTCPICRSLFF 128

The following BLAST results are available for this feature:
BLAST of Csa7G029960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL18_ARATH9.6e-1638.58RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1[more]
ATL46_ARATH1.3e-0954.00RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1[more]
RHA1B_ARATH1.5e-0838.67E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1[more]
ATL50_ARATH1.5e-0859.09Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana GN=ATL50 PE=3 SV=1[more]
ATL47_ARATH3.3e-0850.00RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1[more]
BLAST of Csa7G029960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K513_CUCSA6.8e-85100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G029960 PE=4 SV=1[more]
A0A0B2QNV8_GLYSO3.9e-2448.36RING-H2 finger protein ATL18 OS=Glycine soja GN=glysoja_030196 PE=4 SV=1[more]
K7N2N2_SOYBN3.9e-2448.36Uncharacterized protein OS=Glycine max GN=GLYMA_20G099800 PE=4 SV=1[more]
W9QLH5_9ROSA1.5e-2348.48RING-H2 finger protein ATL18 OS=Morus notabilis GN=L484_013757 PE=4 SV=1[more]
A0A0B2RYS6_GLYSO2.0e-2349.18RING-H2 finger protein ATL18 OS=Glycine soja GN=glysoja_013554 PE=4 SV=1[more]
BLAST of Csa7G029960 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38140.15.4e-1738.58 RING/U-box superfamily protein[more]
AT3G61460.14.5e-1143.75 brassinosteroid-responsive RING-H2[more]
AT5G41400.15.8e-1145.45 RING/U-box superfamily protein[more]
AT5G40250.17.6e-1154.00 RING/U-box superfamily protein[more]
AT5G57750.18.4e-1059.09 RING/U-box superfamily protein[more]
BLAST of Csa7G029960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188149|gb|KGN43382.1|9.8e-85100.00hypothetical protein Csa_7G029960 [Cucumis sativus][more]
gi|659124152|ref|XP_008462008.1|3.4e-6191.41PREDICTED: RING-H2 finger protein ATL18-like [Cucumis melo][more]
gi|702457888|ref|XP_010027388.1|1.1e-2443.94PREDICTED: RING-H2 finger protein ATL18 [Eucalyptus grandis][more]
gi|734381234|gb|KHN23136.1|5.6e-2448.36RING-H2 finger protein ATL18 [Glycine soja][more]
gi|645260631|ref|XP_008235919.1|1.3e-2345.04PREDICTED: RING-H2 finger protein ATL18 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0015031 protein transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0030117 membrane coat
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0008565 protein transporter activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G029960.1Csa7G029960.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 106..149
score: 3.0
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 106..148
score: 4.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 106..149
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 102..150
score: 9.6
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 89..155
score: 2.6
NoneNo IPR availablePANTHERPTHR14155:SF128RING-H2 FINGER PROTEIN ATL46coord: 89..155
score: 2.6
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 99..155
score: 3.81

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G029960Cla015716Watermelon (97103) v1cuwmB604
Csa7G029960MELO3C013477Melon (DHL92) v3.5.1cumeB517
Csa7G029960MELO3C024166Melon (DHL92) v3.5.1cumeB530
Csa7G029960Lsi10G000170Bottle gourd (USVL1VR-Ls)culsiB488
Csa7G029960MELO3C013477.2Melon (DHL92) v3.6.1cumedB496
Csa7G029960MELO3C024166.2Melon (DHL92) v3.6.1cumedB509
Csa7G029960Cla97C02G029670Watermelon (97103) v2cuwmbB529
Csa7G029960Bhi10G000988Wax gourdcuwgoB685
Csa7G029960CSPI06G09520Wild cucumber (PI 183967)cpicuB320
Csa7G029960CSPI07G02390Wild cucumber (PI 183967)cpicuB354
Csa7G029960Cucsa.120020Cucumber (Gy14) v1cgycuB156
Csa7G029960CmaCh20G006910Cucurbita maxima (Rimu)cmacuB571
Csa7G029960CmaCh11G012960Cucurbita maxima (Rimu)cmacuB148
Csa7G029960CmoCh19G008450Cucurbita moschata (Rifu)cmocuB518
Csa7G029960Cp4.1LG04g04240Cucurbita pepo (Zucchini)cpecuB697
Csa7G029960Carg19779Silver-seed gourdcarcuB0872
Csa7G029960Carg18080Silver-seed gourdcarcuB1080
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa7G029960Csa6G117180Cucumber (Chinese Long) v2cucuB171
The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G029960Silver-seed gourdcarcuB1081
Csa7G029960Watermelon (97103) v2cuwmbB533
Csa7G029960Wax gourdcuwgoB670
Csa7G029960Cucumber (Gy14) v1cgycuB111
Csa7G029960Cucurbita maxima (Rimu)cmacuB527
Csa7G029960Cucurbita maxima (Rimu)cmacuB576
Csa7G029960Cucurbita moschata (Rifu)cmocuB132
Csa7G029960Cucurbita moschata (Rifu)cmocuB140
Csa7G029960Cucurbita moschata (Rifu)cmocuB565
Csa7G029960Watermelon (Charleston Gray)cuwcgB546
Csa7G029960Watermelon (Charleston Gray)cuwcgB550
Csa7G029960Cucurbita pepo (Zucchini)cpecuB257
Csa7G029960Cucurbita pepo (Zucchini)cpecuB298
Csa7G029960Cucurbita pepo (Zucchini)cpecuB690
Csa7G029960Bottle gourd (USVL1VR-Ls)culsiB494
Csa7G029960Cucumber (Gy14) v2cgybcuB291
Csa7G029960Cucumber (Gy14) v2cgybcuB324
Csa7G029960Silver-seed gourdcarcuB0228
Csa7G029960Silver-seed gourdcarcuB0384