Carg19779 (gene) Silver-seed gourd

Overview
NameCarg19779
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRing-h2 finger protein atl18
LocationCucurbita_argyrosperma_scaffold_143 : 277529 .. 277960 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGCGTTTTCCGCCTCGCATTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCCCACGTTTTTCATTTCGATTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA

mRNA sequence

ATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGCGTTTTCCGCCTCGCATTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCCCACGTTTTTCATTTCGATTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA

Coding sequence (CDS)

ATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGCGTTTTCCGCCTCGCATTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCCCACGTTTTTCATTTCGATTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA

Protein sequence

MLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
Homology
[Close]
BLAST of Carg19779 vs. NCBI nr
Match: XP_022947864.1 (E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata])

HSP 1 Score: 298.5 bits (763), Expect = 1.2e-77
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 4   FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 63
           FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR
Sbjct: 90  FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 149

Query: 64  AEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRH 123
           AEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRH
Sbjct: 150 AEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRH 209

Query: 124 ERKLQFVVPDNPSCLYYFLQ 144
           ERKLQFVVPDNPSCLYYFLQ
Sbjct: 210 ERKLQFVVPDNPSCLYYFLQ 229

[Close]
BLAST of Carg19779 vs. NCBI nr
Match: XP_023533802.1 (uncharacterized protein LOC111795545, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.8 bits (756), Expect = 7.8e-77
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0 

Query: 4   FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 63
           FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR
Sbjct: 83  FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 142

Query: 64  AEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRH 123
           AEEEICSICLMEFARGDSVCVLPDCSHVFHF CIEKWLERNRFTCPLCRCFFFFNIRNRH
Sbjct: 143 AEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRH 202

Query: 124 ERKLQFVVPDNPSCLYYFLQ 144
           ERKLQFVVPDNPSCLYYFLQ
Sbjct: 203 ERKLQFVVPDNPSCLYYFLQ 222

[Close]
BLAST of Carg19779 vs. NCBI nr
Match: XP_022971128.1 (RING-H2 finger protein ATL18 [Cucurbita maxima])

HSP 1 Score: 275.4 bits (703), Expect = 1.1e-70
Identity = 129/134 (96.27%), Postives = 129/134 (96.27%), Query Frame = 0 

Query: 10  FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEIC 69
           FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQR  DRAEEEIC
Sbjct: 7   FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRRYDRAEEEIC 66

Query: 70  SICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHERKLQF 129
           SICLMEFARGDSVCVL DCSHVFHF CIEKWLERNRFTCPLCRCFFFFNI NRHERKLQF
Sbjct: 67  SICLMEFARGDSVCVLLDCSHVFHFSCIEKWLERNRFTCPLCRCFFFFNIGNRHERKLQF 126

Query: 130 VVPDNPSCLYYFLQ 144
           VVPDNPSCLYYFLQ
Sbjct: 127 VVPDNPSCLYYFLQ 140

[Close]
BLAST of Carg19779 vs. NCBI nr
Match: XP_023512248.1 (RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57
Identity = 111/139 (79.86%), Postives = 119/139 (85.61%), Query Frame = 0 

Query: 6   LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRA- 65
           LAI FFNT+VWIPL R+K+AI+G  SVFRLA +PE D S GGTLLVRRYEELQRSDDR  
Sbjct: 13  LAIIFFNTFVWIPLFRVKEAILGVASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTE 72

Query: 66  EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHE 125
           EEE+CSICL EFAR DSVC LPDC+HVFHFDCIEKW ERNRFTCPLCRC  FFNI   HE
Sbjct: 73  EEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCRC--FFNIEKHHE 132

Query: 126 RKLQFVVPDNPSCLYYFLQ 144
           RKL+FVVPDNPS LYYFLQ
Sbjct: 133 RKLRFVVPDNPSSLYYFLQ 149

[Close]
BLAST of Carg19779 vs. NCBI nr
Match: XP_022944066.1 (RING-H2 finger protein ATL18-like [Cucurbita moschata])

HSP 1 Score: 230.3 bits (586), Expect = 4.0e-57
Identity = 110/139 (79.14%), Postives = 119/139 (85.61%), Query Frame = 0 

Query: 6   LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRA- 65
           LAI FFNT+VWIPL R+K+AI+G  SVFRL  +PE D S GGTLLVRRYEELQRSDDRA 
Sbjct: 13  LAIIFFNTFVWIPLFRVKEAILGVASVFRLVSLPEMDSSRGGTLLVRRYEELQRSDDRAE 72

Query: 66  EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHE 125
           EEE+CSICL EFAR DSVC LPDC+HVFHFDCIEKW ERNRFTCPLCRC  FFNI   HE
Sbjct: 73  EEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCRC--FFNIEKHHE 132

Query: 126 RKLQFVVPDNPSCLYYFLQ 144
           +KL+FVVPDNPS LYYFLQ
Sbjct: 133 KKLRFVVPDNPSSLYYFLQ 149

[Close]
BLAST of Carg19779 vs. TAIR10
Match: AT4G38140.1 (RING/U-box superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 4.3e-13
Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 0 

Query: 61  DDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFF-- 120
           D   EEEI C ICL+EF   D+V  LP C+H+FH +CIE WL R   TCPLCR F     
Sbjct: 53  DKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFVLAPT 112

Query: 121 ----NIRNRH 124
               N+ N H
Sbjct: 113 PPTQNVNNAH 122

[Close]
BLAST of Carg19779 vs. TAIR10
Match: AT5G43420.1 (RING/U-box superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-11
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 0 

Query: 15  VWIPLLR---LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSI 74
           V+ P LR   L +++I  + +F+  F    D + G        EE +RS +      CS+
Sbjct: 89  VYSPELRSRGLDESVIRAIPIFK--FKKRYDQNDGVFTGEGEEEEEKRSQE------CSV 148

Query: 75  CLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCR 113
           CL EF   + + ++P+CSH+FH DCI+ WL+ N   CPLCR
Sbjct: 149 CLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNA-NCPLCR 180

[Close]
BLAST of Carg19779 vs. TAIR10
Match: AT5G66070.2 (RING/U-box superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 5.3e-11
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0 

Query: 41  SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKW 100
           S G +G +L   R  +++ +D   E   CS+CL +F  G++V  LP C H+FH  CI+KW
Sbjct: 174 SKGLTGDSL--NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKW 233

Query: 101 LERNRFTCPLCR 113
           L R+  +CPLCR
Sbjct: 234 LRRHA-SCPLCR 242

[Close]
BLAST of Carg19779 vs. TAIR10
Match: AT1G23980.1 (RING/U-box superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 9.0e-11
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0 

Query: 69  CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFF 117
           C++CL EF+  D + +LP+CSH FH DCI+ WL  N  TCPLCR   F
Sbjct: 144 CAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNS-TCPLCRGTLF 190

[Close]
BLAST of Carg19779 vs. TAIR10
Match: AT2G27940.1 (RING/U-box superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 42  DGSSGGTLLVRRYEEL--QRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEK 101
           D  +  +L V RY +   QR++D      C ICL +F  G++V V+P C HVFH DC++ 
Sbjct: 117 DSQAVRSLPVYRYTKAAKQRNED------CVICLSDFEEGETVKVIPHCGHVFHVDCVDT 176

Query: 102 WLERNRFTCPLCR 113
           WL  +  TCPLCR
Sbjct: 177 WLS-SYVTCPLCR 182

[Close]
BLAST of Carg19779 vs. Swiss-Prot
Match: sp|Q9SZL4|ATL18_ARATH (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-12
Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 0 

Query: 61  DDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFF-- 120
           D   EEEI C ICL+EF   D+V  LP C+H+FH +CIE WL R   TCPLCR F     
Sbjct: 53  DKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFVLAPT 112

Query: 121 ----NIRNRH 124
               N+ N H
Sbjct: 113 PPTQNVNNAH 122

[Close]
BLAST of Carg19779 vs. Swiss-Prot
Match: sp|Q9LSW9|ATL16_ARATH (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-10
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 0 

Query: 15  VWIPLLR---LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSI 74
           V+ P LR   L +++I  + +F+  F    D + G        EE +RS +      CS+
Sbjct: 89  VYSPELRSRGLDESVIRAIPIFK--FKKRYDQNDGVFTGEGEEEEEKRSQE------CSV 148

Query: 75  CLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCR 113
           CL EF   + + ++P+CSH+FH DCI+ WL+ N   CPLCR
Sbjct: 149 CLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNA-NCPLCR 180

[Close]
BLAST of Carg19779 vs. Swiss-Prot
Match: sp|Q9FKX5|NIPL1_ARATH (NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.6e-10
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0 

Query: 41  SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKW 100
           S G +G +L   R  +++ +D   E   CS+CL +F  G++V  LP C H+FH  CI+KW
Sbjct: 150 SKGLTGDSL--NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKW 209

Query: 101 LERNRFTCPLCR 113
           L R+  +CPLCR
Sbjct: 210 LRRHA-SCPLCR 218

[Close]
BLAST of Carg19779 vs. Swiss-Prot
Match: sp|Q8GW38|ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-09
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0 

Query: 69  CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFF 117
           C++CL EF+  D + +LP+CSH FH DCI+ WL  N  TCPLCR   F
Sbjct: 144 CAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNS-TCPLCRGTLF 190

[Close]
BLAST of Carg19779 vs. Swiss-Prot
Match: sp|Q9SJJ7|ATL57_ARATH (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-09
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 42  DGSSGGTLLVRRYEEL--QRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEK 101
           D  +  +L V RY +   QR++D      C ICL +F  G++V V+P C HVFH DC++ 
Sbjct: 117 DSQAVRSLPVYRYTKAAKQRNED------CVICLSDFEEGETVKVIPHCGHVFHVDCVDT 176

Query: 102 WLERNRFTCPLCR 113
           WL  +  TCPLCR
Sbjct: 177 WLS-SYVTCPLCR 182

[Close]
BLAST of Carg19779 vs. TrEMBL
Match: tr|A0A0A0KFW5|A0A0A0KFW5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G117180 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.1e-37
Identity = 80/138 (57.97%), Postives = 98/138 (71.01%), Query Frame = 0 

Query: 8   ISFFNTYVWIPLLRLKDAIIGGV-SVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEE 67
           I FFNT++WIPL R+  AI+G V +VF L   P S       L+VR Y+E    D  + E
Sbjct: 5   ILFFNTFLWIPLFRINQAILGVVATVFGL---PSSPEHGTDLLVVRSYDE----DGGSSE 64

Query: 68  EICSICLMEFAR-GDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHER 127
           EICSICL EF R GDSVC LP+C H+FHF+CI++W++RNRFTCPLCRCFFFF    + + 
Sbjct: 65  EICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFFEDNRKMDT 124

Query: 128 KLQFVVPDNPSCLYYFLQ 144
           K  F+VPDNPS LYYFLQ
Sbjct: 125 KWSFLVPDNPSSLYYFLQ 135

[Close]
BLAST of Carg19779 vs. TrEMBL
Match: tr|A0A2P4MVW4|A0A2P4MVW4_QUESU (Ring-h2 finger protein atl18 OS=Quercus suber OX=58331 GN=CFP56_26352 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.1e-21
Identity = 58/123 (47.15%), Postives = 73/123 (59.35%), Query Frame = 0 

Query: 4   FLLAISFFNTYVWIPLLRLKDAIIG--GVSVFRLAFVPESDGSSGGTLLVRRYEELQRSD 63
           F +A   F T  WIP L+LK A++G  G+ +F     P  +  + G L V R+EELQ  D
Sbjct: 11  FCMATIVFYTCFWIPFLQLKQALLGIMGLLMFTTHDEPVVESFNEGYLPVTRFEELQNVD 70

Query: 64  DRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRN 123
                E+CSICL+EF + D V  L  C HVFH  CIE WL+RN+FTCPLCR F F  +  
Sbjct: 71  -----EMCSICLVEFEKEDVVSQLSRCGHVFHVHCIESWLDRNQFTCPLCRSFLFSAVNT 128

Query: 124 RHE 125
            HE
Sbjct: 131 CHE 128

[Close]
BLAST of Carg19779 vs. TrEMBL
Match: tr|W9QLH5|W9QLH5_9ROSA (RING-H2 finger protein ATL18 OS=Morus notabilis OX=981085 GN=L484_013757 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.6e-20
Identity = 62/148 (41.89%), Postives = 81/148 (54.73%), Query Frame = 0 

Query: 4   FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAF------VPESDGSSGGTLLVRRYEEL 63
           F +A   F T VWIPLL+LK A+ G + +    +      +  S+ ++   L V R+ +L
Sbjct: 11  FCVATIVFYTCVWIPLLQLKKALSGILGMVSFIYQRPLMDITTSNTAAEPWLPVSRFVDL 70

Query: 64  ------QRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLC 123
                 QR   +  EE CSICL EF   D V  L  C HVFH +CIEKWL+ N+FTCPLC
Sbjct: 71  PGRGTCQRRSGQTMEESCSICLAEFEEQDVVSQLSKCGHVFHMNCIEKWLDCNQFTCPLC 130

Query: 124 RCFFFFNIR-NRHERKLQFVVPDNPSCL 139
           R  F  N+  N HE+ L  + P  PS L
Sbjct: 131 RSSFLDNVNANSHEKPLDEINPYIPSYL 158

[Close]
BLAST of Carg19779 vs. TrEMBL
Match: tr|A0A1U8JQC4|A0A1U8JQC4_GOSHI (RING-H2 finger protein ATL18-like OS=Gossypium hirsutum OX=3635 GN=LOC107908195 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-19
Identity = 56/127 (44.09%), Postives = 75/127 (59.06%), Query Frame = 0 

Query: 3   GFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFV-PESDGSSGGTLLVRRYEELQRSD 62
           G   A   F T VWIP ++ K  ++       L FV P S G+   +L V R+E+L+ S 
Sbjct: 10  GSCTAALIFYTCVWIPFIQFKIFVLS-----LLGFVFPRSCGTINVSLPVARFEDLKFSA 69

Query: 63  ---DRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFN 122
              + AEEE+CSICL+EF   D+V  +  C HVFH +CIEKW+ER  FTCPLCR   F N
Sbjct: 70  GCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFTCPLCRSVLFNN 129

Query: 123 IRNRHER 126
           + + H +
Sbjct: 130 VISAHTK 131

[Close]
BLAST of Carg19779 vs. TrEMBL
Match: tr|A0A0D2SLB9|A0A0D2SLB9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G215300 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-19
Identity = 56/127 (44.09%), Postives = 75/127 (59.06%), Query Frame = 0 

Query: 3   GFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFV-PESDGSSGGTLLVRRYEELQRSD 62
           G   A   F T VWIP ++ K  ++       L FV P S G+   +L V R+E+L+ S 
Sbjct: 10  GSCTAALIFYTCVWIPFIQFKIFVLS-----LLGFVFPRSCGTINVSLPVARFEDLKFSA 69

Query: 63  ---DRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFN 122
              + AEEE+CSICL+EF   D+V  +  C HVFH +CIEKW+ER  FTCPLCR   F N
Sbjct: 70  GCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFTCPLCRSVLFNN 129

Query: 123 IRNRHER 126
           + + H +
Sbjct: 130 VISAHTK 131

The following BLAST results are available for this feature:
BLAST of Carg19779 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022947864.11.2e-77100.00E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata][more]
XP_023533802.17.8e-7799.29uncharacterized protein LOC111795545, partial [Cucurbita pepo subsp. pepo][more]
XP_022971128.11.1e-7096.27RING-H2 finger protein ATL18 [Cucurbita maxima][more]
XP_023512248.11.8e-5779.86RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo][more]
XP_022944066.14.0e-5779.14RING-H2 finger protein ATL18-like [Cucurbita moschata][more]
BLAST of Carg19779 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38140.14.3e-1350.00RING/U-box superfamily protein[more]
AT5G43420.11.8e-1136.63RING/U-box superfamily protein[more]
AT5G66070.25.3e-1143.06RING/U-box superfamily protein[more]
AT1G23980.19.0e-1154.17RING/U-box superfamily protein[more]
AT2G27940.11.2e-1043.84RING/U-box superfamily protein[more]
BLAST of Carg19779 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SZL4|ATL18_ARATH7.8e-1250.00RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1[more]
sp|Q9LSW9|ATL16_ARATH3.3e-1036.63RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1[more]
sp|Q9FKX5|NIPL1_ARATH9.6e-1043.06NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV... [more]
sp|Q8GW38|ATL47_ARATH1.6e-0954.17RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1[more]
sp|Q9SJJ7|ATL57_ARATH2.1e-0943.84RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1[more]
BLAST of Carg19779 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KFW5|A0A0A0KFW5_CUCSA3.1e-3757.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G117180 PE=4 SV=1[more]
tr|A0A2P4MVW4|A0A2P4MVW4_QUESU3.1e-2147.15Ring-h2 finger protein atl18 OS=Quercus suber OX=58331 GN=CFP56_26352 PE=4 SV=1[more]
tr|W9QLH5|W9QLH5_9ROSA7.6e-2041.89RING-H2 finger protein ATL18 OS=Morus notabilis OX=981085 GN=L484_013757 PE=4 SV... [more]
tr|A0A1U8JQC4|A0A1U8JQC4_GOSHI1.7e-1944.09RING-H2 finger protein ATL18-like OS=Gossypium hirsutum OX=3635 GN=LOC107908195 ... [more]
tr|A0A0D2SLB9|A0A0D2SLB9_GOSRA1.7e-1944.09Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G215300 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19779-RACarg19779-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 69..111
e-value: 1.6E-7
score: 41.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 69..112
e-value: 2.1E-14
score: 53.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 69..112
score: 12.976
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 46..115
e-value: 6.6E-19
score: 69.4
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 54..112
NoneNo IPR availablePANTHERPTHR14155:SF429RING-H2 FINGER PROTEIN ATL57coord: 54..112
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 69..112
e-value: 1.74146E-15
score: 65.4009
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 57..127

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19779Cla015716Watermelon (97103) v1carwmB0854
Carg19779Csa6G117180Cucumber (Chinese Long) v2carcuB0871
Carg19779Csa7G029960Cucumber (Chinese Long) v2carcuB0872
Carg19779MELO3C013477Melon (DHL92) v3.5.1carmeB0843
Carg19779ClCG02G003160Watermelon (Charleston Gray)carwcgB0828
Carg19779CSPI07G02390Wild cucumber (PI 183967)carcpiB0892
Carg19779CSPI06G09520Wild cucumber (PI 183967)carcpiB0891
Carg19779Cucsa.120020Cucumber (Gy14) v1carcgyB0974
Carg19779CmaCh20G006910Cucurbita maxima (Rimu)carcmaB1184
Carg19779CmoCh19G008450Cucurbita moschata (Rifu)carcmoB1152
Carg19779Lsi10G000170Bottle gourd (USVL1VR-Ls)carlsiB776
Carg19779Cp4.1LG16g03700Cucurbita pepo (Zucchini)carcpeB1192
Carg19779CsGy6G009610Cucumber (Gy14) v2carcgybB0845
Carg19779MELO3C013477.2Melon (DHL92) v3.6.1carmedB0854
Carg19779CsaV3_6G009950Cucumber (Chinese Long) v3carcucB0896
Carg19779Cla97C02G029670Watermelon (97103) v2carwmbB0892
Carg19779Bhi10G000988Wax gourdcarwgoB0999
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19779Carg16111Silver-seed gourdcarcarB375
The following block(s) are covering this gene:
GeneOrganismBlock
Carg19779Silver-seed gourdcarcarB376
Carg19779Silver-seed gourdcarcarB631
Carg19779Cucumber (Gy14) v2carcgybB0846
Carg19779Cucumber (Gy14) v1carcgyB0973
Carg19779Cucurbita maxima (Rimu)carcmaB1181
Carg19779Cucurbita maxima (Rimu)carcmaB1183
Carg19779Cucurbita maxima (Rimu)carcmaB1186
Carg19779Cucurbita maxima (Rimu)carcmaB1187
Carg19779Cucurbita moschata (Rifu)carcmoB1150
Carg19779Cucurbita moschata (Rifu)carcmoB1155
Carg19779Cucurbita moschata (Rifu)carcmoB1156
Carg19779Cucurbita pepo (Zucchini)carcpeB1190
Carg19779Cucurbita pepo (Zucchini)carcpeB1189
Carg19779Cucurbita pepo (Zucchini)carcpeB1193
Carg19779Cucurbita pepo (Zucchini)carcpeB1194
Carg19779Bottle gourd (USVL1VR-Ls)carlsiB779
Carg19779Watermelon (Charleston Gray)carwcgB0827
Carg19779Watermelon (97103) v2carwmbB0890
Carg19779Watermelon (97103) v2carwmbB0891
Carg19779Wax gourdcarwgoB0995
Carg19779Wax gourdcarwgoB0998
Carg19779Silver-seed gourdcarcarB237