Carg19779-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGCGTTTTCCGCCTCGCATTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCCCACGTTTTTCATTTCGATTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA ATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGCGTTTTCCGCCTCGCATTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCCCACGTTTTTCATTTCGATTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA ATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGCGTTTTCCGCCTCGCATTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCCCACGTTTTTCATTTCGATTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA MLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
BLAST of Carg19779-RA vs. NCBI nr
Match: XP_022947864.1 (E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata]) HSP 1 Score: 298.5 bits (763), Expect = 1.2e-77 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
BLAST of Carg19779-RA vs. NCBI nr
Match: XP_023533802.1 (uncharacterized protein LOC111795545, partial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 295.8 bits (756), Expect = 7.8e-77 Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0
BLAST of Carg19779-RA vs. NCBI nr
Match: XP_022971128.1 (RING-H2 finger protein ATL18 [Cucurbita maxima]) HSP 1 Score: 275.4 bits (703), Expect = 1.1e-70 Identity = 129/134 (96.27%), Postives = 129/134 (96.27%), Query Frame = 0
BLAST of Carg19779-RA vs. NCBI nr
Match: XP_023512248.1 (RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57 Identity = 111/139 (79.86%), Postives = 119/139 (85.61%), Query Frame = 0
BLAST of Carg19779-RA vs. NCBI nr
Match: XP_022944066.1 (RING-H2 finger protein ATL18-like [Cucurbita moschata]) HSP 1 Score: 230.3 bits (586), Expect = 4.0e-57 Identity = 110/139 (79.14%), Postives = 119/139 (85.61%), Query Frame = 0
BLAST of Carg19779-RA vs. TAIR10
Match: AT4G38140.1 (RING/U-box superfamily protein) HSP 1 Score: 71.6 bits (174), Expect = 4.3e-13 Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 0
BLAST of Carg19779-RA vs. TAIR10
Match: AT5G43420.1 (RING/U-box superfamily protein) HSP 1 Score: 66.2 bits (160), Expect = 1.8e-11 Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 0
BLAST of Carg19779-RA vs. TAIR10
Match: AT5G66070.2 (RING/U-box superfamily protein) HSP 1 Score: 64.7 bits (156), Expect = 5.3e-11 Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0
BLAST of Carg19779-RA vs. TAIR10
Match: AT1G23980.1 (RING/U-box superfamily protein) HSP 1 Score: 63.9 bits (154), Expect = 9.0e-11 Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0
BLAST of Carg19779-RA vs. TAIR10
Match: AT2G27940.1 (RING/U-box superfamily protein) HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10 Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0
BLAST of Carg19779-RA vs. Swiss-Prot
Match: sp|Q9SZL4|ATL18_ARATH (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 7.8e-12 Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 0
BLAST of Carg19779-RA vs. Swiss-Prot
Match: sp|Q9LSW9|ATL16_ARATH (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 3.3e-10 Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 0
BLAST of Carg19779-RA vs. Swiss-Prot
Match: sp|Q9FKX5|NIPL1_ARATH (NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 9.6e-10 Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0
BLAST of Carg19779-RA vs. Swiss-Prot
Match: sp|Q8GW38|ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.6e-09 Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0
BLAST of Carg19779-RA vs. Swiss-Prot
Match: sp|Q9SJJ7|ATL57_ARATH (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 2.1e-09 Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0
BLAST of Carg19779-RA vs. TrEMBL
Match: tr|A0A0A0KFW5|A0A0A0KFW5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G117180 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 3.1e-37 Identity = 80/138 (57.97%), Postives = 98/138 (71.01%), Query Frame = 0
BLAST of Carg19779-RA vs. TrEMBL
Match: tr|A0A2P4MVW4|A0A2P4MVW4_QUESU (Ring-h2 finger protein atl18 OS=Quercus suber OX=58331 GN=CFP56_26352 PE=4 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 3.1e-21 Identity = 58/123 (47.15%), Postives = 73/123 (59.35%), Query Frame = 0
BLAST of Carg19779-RA vs. TrEMBL
Match: tr|W9QLH5|W9QLH5_9ROSA (RING-H2 finger protein ATL18 OS=Morus notabilis OX=981085 GN=L484_013757 PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 7.6e-20 Identity = 62/148 (41.89%), Postives = 81/148 (54.73%), Query Frame = 0
BLAST of Carg19779-RA vs. TrEMBL
Match: tr|A0A1U8JQC4|A0A1U8JQC4_GOSHI (RING-H2 finger protein ATL18-like OS=Gossypium hirsutum OX=3635 GN=LOC107908195 PE=4 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.7e-19 Identity = 56/127 (44.09%), Postives = 75/127 (59.06%), Query Frame = 0
BLAST of Carg19779-RA vs. TrEMBL
Match: tr|A0A0D2SLB9|A0A0D2SLB9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G215300 PE=4 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.7e-19 Identity = 56/127 (44.09%), Postives = 75/127 (59.06%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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