Cp4.1LG05g13300 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g13300
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING-H2 finger protein ATL18
LocationCp4.1LG05 : 9353506 .. 9355586 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGTGGAGAGTTGGCAAGCCATGTATTTCAATGTGGATAAGAATAAGGTTAGGGAAATGGTTACTACGATTCCTCGGCTTAAGGGTTCGATGCAAGACCGTCGTGGAGCAAGAGGAACGGTCGAGAAGTGTGGTCGGGTAGCTGGTGCTGCTGCTCGTGTTATCATCTCTGCCATTCTTGGTGACCCTACTGCTATCGTAGCGGCTGTGGTTGGTGGCATCATATCGAAGTAAGATGTCTTTGAATGCATGCACGTGCAAACATGTTCTTTTTTTTTATTTTTCGGGATGTGTGTTACTTTTATATACATAATTTCGTGTACATTGATTTCATGCATATGAATCCACTAGACGAGCGTTGCTTTTGTACTCTCTAAGTCTGACTTTCGGGTATGCATCATTTTCATGCGTAAGCGTTATCACTTTCATACATACATCACGTAGAAACAAGGTAAAAAACATGACTAGAAGATCACCGATGCGTACAAACATCACGGAGGAAGAGAGGTAGACTAAGAGGGAGGTATACGAGGCTCGTTTGCATGAAGAAGAATGCTTTGACGGTGTATTTTAGGGTTTTCGTTCTTTTTTCAAAAATATCTTTGAACTTTTTTACGTGATTCTGTTAAAAAAATTTAAAAAAACTAAAAAAAAAAAAAGTTCGAATTTTTTAAAATAACATTAATATCCTTAACATTATATATATATTTTTTTAATTAAAGAATGAAATAAGAAAATTAAAAGGATATTCAAGAAATCTAAATTTCTTGTCCCGAACGAGTGTTCGAAGGACCCGAGAACCTGATCAACCTGGATTACCCAACCAAAACCATAAAGATTGGGTTGAATTAGATTTCGAAAAACCGAAAATTCGAGTCGGTTTGTAGGTTAACATGTTTCTAGTCAGGCTAACTCGACCAGTACTCTTGAATATAAAATTACAACATTTAACTATGTTAGTCTTGAGTTGTAACTCGTGAATATTTGATATTTGAGTTTTATGAGATTTTAGTTAGTATCGTTGTATTATGGATAAATAAATTTTTTCTAAAAAGAAATAACCCAACCTCTATTTTCCGGCTGTGAACTCTATTGGGGTTAGGTTAACTCGACAACCCAGCCCGAAAATAGAGGTTAGGTTGGATTGGGTTGTGAGCTCTGCTCGAGTCTAGTTGATAAATAGAAAGAAACTCATAATTATTAAATCAAAATTAACAAAGTTTTGACATTGTTATTCCAATAATTTCTCCATAGTGTCGACATGCGAAAAGCTACTTTAAAGCTTTTCAAATAATTGAGTTTAAGCTATGGAAACAATAAATATGCCAAAAACCAGCAATCGCCGCCGGCCGCCCGGCCCTTCTTCTCCGCCGGAATCATCGCTCAATCAGGAGAGCAGTTGAAAAGTTCCAAAGTCGCAGAGCACACACTGATCGATATAATACTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATCGCTCTAGAAATTCCAGAAGTGAATCGATATGCCCCACGCTTTCCCCAAAACTCAGATTTCTCGGACTTCAATGGCGAAATCGACGATGTAATCCTCCTCTTTACTCCTTCAATAGTCCTATTTTAACACCGATTTCCTTCAATCCTTCAATCGCAACATCGTCATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGTGTTTTCCGCCTCGCGTTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCGCACGTTTTTCATTTCGGTTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA

mRNA sequence

ATGTTGGTTAGGGAAATGGTTACTACGATTCCTCGGCTTAAGGGTTCGATGCAAGACCGTCGTGGAGCAAGAGGAACGGTCGAGAAGTGTGGTCGGGTAGCTGGTGCTGCTGCTCGTGTTATCATCTCTGCCATTCTTGGTGACCCTACTGCTATCGTAGCGGCTGTGCAATCGCCGCCGGCCGCCCGGCCCTTCTTCTCCGCCGGAATCATCGCTCAATCAGGAGAGCAGTTGAAAAGTTCCAAAGTCGCAGAGCACACACTGATCGATATAATACTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATCGCTCTAGAAATTCCAGAAGTGAATCGATATGCCCCACGCTTTCCCCAAAACTCAGATTTCTCGGACTTCAATGGCGAAATCGACGATTCCTATTTTAACACCGATTTCCTTCAATCCTTCAATCGCAACATCGTCATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGTGTTTTCCGCCTCGCGTTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCGCACGTTTTTCATTTCGGTTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA

Coding sequence (CDS)

ATGTTGGTTAGGGAAATGGTTACTACGATTCCTCGGCTTAAGGGTTCGATGCAAGACCGTCGTGGAGCAAGAGGAACGGTCGAGAAGTGTGGTCGGGTAGCTGGTGCTGCTGCTCGTGTTATCATCTCTGCCATTCTTGGTGACCCTACTGCTATCGTAGCGGCTGTGCAATCGCCGCCGGCCGCCCGGCCCTTCTTCTCCGCCGGAATCATCGCTCAATCAGGAGAGCAGTTGAAAAGTTCCAAAGTCGCAGAGCACACACTGATCGATATAATACTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATCGCTCTAGAAATTCCAGAAGTGAATCGATATGCCCCACGCTTTCCCCAAAACTCAGATTTCTCGGACTTCAATGGCGAAATCGACGATTCCTATTTTAACACCGATTTCCTTCAATCCTTCAATCGCAACATCGTCATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGTGTTTTCCGCCTCGCGTTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCGCACGTTTTTCATTTCGGTTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA

Protein sequence

MLVREMVTTIPRLKGSMQDRRGARGTVEKCGRVAGAAARVIISAILGDPTAIVAAVQSPPAARPFFSAGIIAQSGEQLKSSKVAEHTLIDIILLLLLLLLLLLQIALEIPEVNRYAPRFPQNSDFSDFNGEIDDSYFNTDFLQSFNRNIVMLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ
Homology
[Close]
BLAST of Cp4.1LG05g13300 vs. Swiss-Prot
Match: ATL18_ARATH (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-11
Identity = 35/70 (50.00%), Postives = 40/70 (57.14%), Query Frame = 1 

Query: 211 DDRAEEEICS-ICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFF-- 270
           D   EEEIC  ICL+EF   D+V  LP C+H+FH  CIE WL R   TCPLCR F     
Sbjct: 53  DKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFVLAPT 112

Query: 271 ----NIRNRH 274
               N+ N H
Sbjct: 113 PPTQNVNNAH 122

[Close]
BLAST of Cp4.1LG05g13300 vs. Swiss-Prot
Match: NIPL1_ARATH (NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-09
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1 

Query: 191 SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKW 250
           S G +G +L   R  +++ +D   E   CS+CL +F  G++V  LP C H+FH  CI+KW
Sbjct: 150 SKGLTGDSL--NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKW 209

Query: 251 LERNRFTCPLCR 263
           L R+  +CPLCR
Sbjct: 210 LRRHA-SCPLCR 218

[Close]
BLAST of Cp4.1LG05g13300 vs. Swiss-Prot
Match: ATL46_ARATH (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-09
Identity = 36/96 (37.50%), Postives = 47/96 (48.96%), Query Frame = 1 

Query: 172 LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEI-CSICLMEFARGD 231
           L  A I  + VF    +  S G  GG             +  A+E   C++CL EF+  D
Sbjct: 108 LDQAFIDALPVFHYKEIVGSAGGGGG-------------NGAAQEPFDCAVCLCEFSEKD 167

Query: 232 SVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFF 267
            + +LP CSH FH  CI+ WL+ N  TCPLCR   F
Sbjct: 168 KLRLLPMCSHAFHLNCIDTWLQSNS-TCPLCRGTLF 189

[Close]
BLAST of Cp4.1LG05g13300 vs. Swiss-Prot
Match: ATL16_ARATH (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-09
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = 1 

Query: 165 VWIPLLR---LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSI 224
           V+ P LR   L +++I  + +F+  F    D + G        EE +RS +      CS+
Sbjct: 89  VYSPELRSRGLDESVIRAIPIFK--FKKRYDQNDGVFTGEGEEEEEKRSQE------CSV 148

Query: 225 CLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCR 263
           CL EF   + + ++P+CSH+FH  CI+ WL+ N   CPLCR
Sbjct: 149 CLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNA-NCPLCR 180

[Close]
BLAST of Cp4.1LG05g13300 vs. Swiss-Prot
Match: ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-08
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 1 

Query: 219 CSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFF 267
           C++CL EF+  D + +LP+CSH FH  CI+ WL  N  TCPLCR   F
Sbjct: 144 CAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNS-TCPLCRGTLF 190

[Close]
BLAST of Cp4.1LG05g13300 vs. TrEMBL
Match: A0A0A0KFW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G117180 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.4e-37
Identity = 80/138 (57.97%), Postives = 97/138 (70.29%), Query Frame = 1 

Query: 158 ISFFNTYVWIPLLRLKDAIIGGVS-VFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEE 217
           I FFNT++WIPL R+  AI+G V+ VF L   P S       L+VR Y+E    D  + E
Sbjct: 5   ILFFNTFLWIPLFRINQAILGVVATVFGL---PSSPEHGTDLLVVRSYDE----DGGSSE 64

Query: 218 EICSICLMEFAR-GDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRHER 277
           EICSICL EF R GDSVC LP+C H+FHF CI++W++RNRFTCPLCRCFFFF    + + 
Sbjct: 65  EICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFFEDNRKMDT 124

Query: 278 KLQFVVPDNPSCLYYFLQ 294
           K  F+VPDNPS LYYFLQ
Sbjct: 125 KWSFLVPDNPSSLYYFLQ 135

[Close]
BLAST of Cp4.1LG05g13300 vs. TrEMBL
Match: W9QLH5_9ROSA (RING-H2 finger protein ATL18 OS=Morus notabilis GN=L484_013757 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.4e-20
Identity = 62/148 (41.89%), Postives = 80/148 (54.05%), Query Frame = 1 

Query: 154 FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAF------VPESDGSSGGTLLVRRYEEL 213
           F +A   F T VWIPLL+LK A+ G + +    +      +  S+ ++   L V R+ +L
Sbjct: 11  FCVATIVFYTCVWIPLLQLKKALSGILGMVSFIYQRPLMDITTSNTAAEPWLPVSRFVDL 70

Query: 214 ------QRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLC 273
                 QR   +  EE CSICL EF   D V  L  C HVFH  CIEKWL+ N+FTCPLC
Sbjct: 71  PGRGTCQRRSGQTMEESCSICLAEFEEQDVVSQLSKCGHVFHMNCIEKWLDCNQFTCPLC 130

Query: 274 RCFFFFNIR-NRHERKLQFVVPDNPSCL 289
           R  F  N+  N HE+ L  + P  PS L
Sbjct: 131 RSSFLDNVNANSHEKPLDEINPYIPSYL 158

[Close]
BLAST of Cp4.1LG05g13300 vs. TrEMBL
Match: A0A0D2SLB9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G215300 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-19
Identity = 56/127 (44.09%), Postives = 74/127 (58.27%), Query Frame = 1 

Query: 153 GFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFV-PESDGSSGGTLLVRRYEELQRSD 212
           G   A   F T VWIP ++ K  ++       L FV P S G+   +L V R+E+L+ S 
Sbjct: 10  GSCTAALIFYTCVWIPFIQFKIFVLS-----LLGFVFPRSCGTINVSLPVARFEDLKFSA 69

Query: 213 ---DRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFN 272
              + AEEE+CSICL+EF   D+V  +  C HVFH  CIEKW+ER  FTCPLCR   F N
Sbjct: 70  GCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFTCPLCRSVLFNN 129

Query: 273 IRNRHER 276
           + + H +
Sbjct: 130 VISAHTK 131

[Close]
BLAST of Cp4.1LG05g13300 vs. TrEMBL
Match: A0A0A0K513_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G029960 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.9e-18
Identity = 56/114 (49.12%), Postives = 67/114 (58.77%), Query Frame = 1 

Query: 156 LAISFFNTYVWIPLLRLKDAIIGGVSVFR---LAFVPESDGSSGGTLLVRRYEELQRSDD 215
           +A   F T VWIPL +LK AI     +        +  +       LLV R+EELQR+  
Sbjct: 41  MATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLLVCRFEELQRAVG 100

Query: 216 RAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFF 267
            +EEEICS+CL EF R   V  L  CSHVFH  CIE WL+RN+FTCPLCR F F
Sbjct: 101 -SEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLCRSFIF 153

[Close]
BLAST of Cp4.1LG05g13300 vs. TrEMBL
Match: M5VWY7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015164mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-17
Identity = 55/130 (42.31%), Postives = 74/130 (56.92%), Query Frame = 1 

Query: 156 LAISFFNTYVWIPLLRLKDAI---IGGVSVFRLAFVPESD--GSSGGTLLVRRYEELQ-- 215
           +A  FF T  WIPLL++K A+   +G V  F      E D  G +   L V R+++LQ  
Sbjct: 13  MATIFFYTCFWIPLLQMKRALARLVGFVFFFTCQVEQEEDQMGCNQMCLPVARFQDLQDH 72

Query: 216 ---RSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFF 275
              R    A EE CSICL+EF + D V  L  C HVFH  CIE+W+E + FTCP+CR   
Sbjct: 73  GSLRCGQEALEETCSICLVEFEKEDVVSQLSKCGHVFHMDCIERWIESSHFTCPICRS-L 132

[Close]
BLAST of Cp4.1LG05g13300 vs. TAIR10
Match: AT4G38140.1 (AT4G38140.1 RING/U-box superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 8.9e-13
Identity = 35/70 (50.00%), Postives = 40/70 (57.14%), Query Frame = 1 

Query: 211 DDRAEEEICS-ICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFF-- 270
           D   EEEIC  ICL+EF   D+V  LP C+H+FH  CIE WL R   TCPLCR F     
Sbjct: 53  DKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFVLAPT 112

Query: 271 ----NIRNRH 274
               N+ N H
Sbjct: 113 PPTQNVNNAH 122

[Close]
BLAST of Cp4.1LG05g13300 vs. TAIR10
Match: AT5G41400.1 (AT5G41400.1 RING/U-box superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 6.4e-11
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1 

Query: 187 FVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGC 246
           F P +   +G  L V R+ EL R    +  + C++CL EF   D +  L +C H+FH  C
Sbjct: 73  FFPVAARLAGEILPVIRFSELTRPGFGSGSDCCAVCLHEFENDDEIRRLTNCQHIFHRSC 132

Query: 247 IEKW-LERNRFTCPLCRCFF 266
           +++W +  N+ TCPLCR  F
Sbjct: 133 LDRWMMGYNQMTCPLCRTPF 152

[Close]
BLAST of Cp4.1LG05g13300 vs. TAIR10
Match: AT5G66070.2 (AT5G66070.2 RING/U-box superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-10
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1 

Query: 191 SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKW 250
           S G +G +L   R  +++ +D   E   CS+CL +F  G++V  LP C H+FH  CI+KW
Sbjct: 174 SKGLTGDSL--NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKW 233

Query: 251 LERNRFTCPLCR 263
           L R+  +CPLCR
Sbjct: 234 LRRHA-SCPLCR 242

[Close]
BLAST of Cp4.1LG05g13300 vs. TAIR10
Match: AT1G63840.1 (AT1G63840.1 RING/U-box superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-10
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 189 PESDGSSGGTLL-VRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCI 248
           P+S     G +L V R+ ++    +R E E C++CL +F   D +  L +C H+FH GC+
Sbjct: 62  PDSAAILAGEMLPVVRFSDI----NRPESECCAVCLYDFENDDEIRRLTNCRHIFHRGCL 121

Query: 249 EKW-LERNRFTCPLCRCFF 266
           ++W +  N+ TCPLCR  F
Sbjct: 122 DRWMMGYNQMTCPLCRTQF 136

[Close]
BLAST of Cp4.1LG05g13300 vs. TAIR10
Match: AT5G40250.1 (AT5G40250.1 RING/U-box superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-10
Identity = 36/96 (37.50%), Postives = 47/96 (48.96%), Query Frame = 1 

Query: 172 LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEI-CSICLMEFARGD 231
           L  A I  + VF    +  S G  GG             +  A+E   C++CL EF+  D
Sbjct: 108 LDQAFIDALPVFHYKEIVGSAGGGGG-------------NGAAQEPFDCAVCLCEFSEKD 167

Query: 232 SVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFF 267
            + +LP CSH FH  CI+ WL+ N  TCPLCR   F
Sbjct: 168 KLRLLPMCSHAFHLNCIDTWLQSNS-TCPLCRGTLF 189

[Close]
BLAST of Cp4.1LG05g13300 vs. NCBI nr
Match: gi|700191432|gb|KGN46636.1| (hypothetical protein Csa_6G117180 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 6.4e-37
Identity = 80/138 (57.97%), Postives = 97/138 (70.29%), Query Frame = 1 

Query: 158 ISFFNTYVWIPLLRLKDAIIGGVS-VFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEE 217
           I FFNT++WIPL R+  AI+G V+ VF L   P S       L+VR Y+E    D  + E
Sbjct: 5   ILFFNTFLWIPLFRINQAILGVVATVFGL---PSSPEHGTDLLVVRSYDE----DGGSSE 64

Query: 218 EICSICLMEFAR-GDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRHER 277
           EICSICL EF R GDSVC LP+C H+FHF CI++W++RNRFTCPLCRCFFFF    + + 
Sbjct: 65  EICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFFEDNRKMDT 124

Query: 278 KLQFVVPDNPSCLYYFLQ 294
           K  F+VPDNPS LYYFLQ
Sbjct: 125 KWSFLVPDNPSSLYYFLQ 135

[Close]
BLAST of Cp4.1LG05g13300 vs. NCBI nr
Match: gi|778722093|ref|XP_011658403.1| (PREDICTED: uncharacterized protein LOC105435989 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 9.5e-25
Identity = 69/138 (50.00%), Postives = 83/138 (60.14%), Query Frame = 1 

Query: 158 ISFFNTYVWIPLLRLKDAIIGGVS-VFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEE 217
           I FFNT++WIPL R+  AI+G V+ VF L   P S       L+VR Y+E    D  + E
Sbjct: 5   ILFFNTFLWIPLFRINQAILGVVATVFGL---PSSPEHGTDLLVVRSYDE----DGGSSE 64

Query: 218 EICSICLMEFAR-GDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRHER 277
           EICSICL EF R GDS                 +W++RNRFTCPLCRCFFFF    + + 
Sbjct: 65  EICSICLTEFGRSGDS-----------------EWIDRNRFTCPLCRCFFFFEDNRKMDT 118

Query: 278 KLQFVVPDNPSCLYYFLQ 294
           K  F+VPDNPS LYYFLQ
Sbjct: 125 KWSFLVPDNPSSLYYFLQ 118

[Close]
BLAST of Cp4.1LG05g13300 vs. NCBI nr
Match: gi|1009165804|ref|XP_015901241.1| (PREDICTED: RING-H2 finger protein ATL18-like [Ziziphus jujuba])

HSP 1 Score: 107.8 bits (268), Expect = 3.2e-20
Identity = 55/136 (40.44%), Postives = 79/136 (58.09%), Query Frame = 1 

Query: 161 FNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEI-- 220
           F T +WIP LRLK A++  + +  LA+  + +  +  +L V R+ +LQ   DR  EE+  
Sbjct: 18  FYTCIWIPCLRLKRALLRILGIISLAY--DEEFGTEPSLPVGRFVDLQSCRDRKNEELME 77

Query: 221 ---CSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRHER 280
              CS+CL+EF + D V  LP C HVFHF CIE W+  N+FTCPLCR  F  N++  H +
Sbjct: 78  ESCCSVCLVEFDKEDLVSKLPKCGHVFHFDCIESWVNCNQFTCPLCRS-FLLNVKPSHAK 137

Query: 281 KLQFVVPDNPSCLYYF 292
               +  + PS  + F
Sbjct: 138 CTHGLFSNTPSSYFAF 150

[Close]
BLAST of Cp4.1LG05g13300 vs. NCBI nr
Match: gi|703077977|ref|XP_010090735.1| (RING-H2 finger protein ATL18 [Morus notabilis])

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 62/148 (41.89%), Postives = 80/148 (54.05%), Query Frame = 1 

Query: 154 FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAF------VPESDGSSGGTLLVRRYEEL 213
           F +A   F T VWIPLL+LK A+ G + +    +      +  S+ ++   L V R+ +L
Sbjct: 11  FCVATIVFYTCVWIPLLQLKKALSGILGMVSFIYQRPLMDITTSNTAAEPWLPVSRFVDL 70

Query: 214 ------QRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLC 273
                 QR   +  EE CSICL EF   D V  L  C HVFH  CIEKWL+ N+FTCPLC
Sbjct: 71  PGRGTCQRRSGQTMEESCSICLAEFEEQDVVSQLSKCGHVFHMNCIEKWLDCNQFTCPLC 130

Query: 274 RCFFFFNIR-NRHERKLQFVVPDNPSCL 289
           R  F  N+  N HE+ L  + P  PS L
Sbjct: 131 RSSFLDNVNANSHEKPLDEINPYIPSYL 158

[Close]
BLAST of Cp4.1LG05g13300 vs. NCBI nr
Match: gi|823162649|ref|XP_012481249.1| (PREDICTED: RING-H2 finger protein ATL18-like [Gossypium raimondii])

HSP 1 Score: 104.4 bits (259), Expect = 3.5e-19
Identity = 56/127 (44.09%), Postives = 74/127 (58.27%), Query Frame = 1 

Query: 153 GFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFV-PESDGSSGGTLLVRRYEELQRSD 212
           G   A   F T VWIP ++ K  ++       L FV P S G+   +L V R+E+L+ S 
Sbjct: 10  GSCTAALIFYTCVWIPFIQFKIFVLS-----LLGFVFPRSCGTINVSLPVARFEDLKFSA 69

Query: 213 ---DRAEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFN 272
              + AEEE+CSICL+EF   D+V  +  C HVFH  CIEKW+ER  FTCPLCR   F N
Sbjct: 70  GCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFTCPLCRSVLFNN 129

Query: 273 IRNRHER 276
           + + H +
Sbjct: 130 VISAHTK 131

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g13300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL18_ARATH1.6e-1150.00RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1[more]
NIPL1_ARATH1.9e-0943.06NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27 PE=2 SV=1[more]
ATL46_ARATH2.5e-0937.50RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1[more]
ATL16_ARATH3.3e-0935.64RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1[more]
ATL47_ARATH1.6e-0852.08RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1[more]
BLAST of Cp4.1LG05g13300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFW5_CUCSA4.4e-3757.97Uncharacterized protein OS=Cucumis sativus GN=Csa_6G117180 PE=4 SV=1[more]
W9QLH5_9ROSA8.4e-2041.89RING-H2 finger protein ATL18 OS=Morus notabilis GN=L484_013757 PE=4 SV=1[more]
A0A0D2SLB9_GOSRA2.4e-1944.09Uncharacterized protein OS=Gossypium raimondii GN=B456_005G215300 PE=4 SV=1[more]
A0A0A0K513_CUCSA7.9e-1849.12Uncharacterized protein OS=Cucumis sativus GN=Csa_7G029960 PE=4 SV=1[more]
M5VWY7_PRUPE1.0e-1742.31Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015164mg PE=4 SV=1[more]
BLAST of Cp4.1LG05g13300 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38140.18.9e-1350.00 RING/U-box superfamily protein[more]
AT5G41400.16.4e-1137.50 RING/U-box superfamily protein[more]
AT5G66070.21.1e-1043.06 RING/U-box superfamily protein[more]
AT1G63840.11.4e-1037.97 RING/U-box superfamily protein[more]
AT5G40250.11.4e-1037.50 RING/U-box superfamily protein[more]
BLAST of Cp4.1LG05g13300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191432|gb|KGN46636.1|6.4e-3757.97hypothetical protein Csa_6G117180 [Cucumis sativus][more]
gi|778722093|ref|XP_011658403.1|9.5e-2550.00PREDICTED: uncharacterized protein LOC105435989 [Cucumis sativus][more]
gi|1009165804|ref|XP_015901241.1|3.2e-2040.44PREDICTED: RING-H2 finger protein ATL18-like [Ziziphus jujuba][more]
gi|703077977|ref|XP_010090735.1|1.2e-1941.89RING-H2 finger protein ATL18 [Morus notabilis][more]
gi|823162649|ref|XP_012481249.1|3.5e-1944.09PREDICTED: RING-H2 finger protein ATL18-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0035556 intracellular signal transduction
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0047134 protein-disulfide reductase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g13300.1Cp4.1LG05g13300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 219..262
score: 6.6
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 219..261
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 219..262
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 215..263
score: 1.4
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 193..262
score: 7.3E-19coord: 87..153
score: 7.3
NoneNo IPR availablePANTHERPTHR14155:SF167SUBFAMILY NOT NAMEDcoord: 87..153
score: 7.3E-19coord: 193..262
score: 7.3
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 208..276
score: 8.97

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g13300Cucsa.120020Cucumber (Gy14) v1cgycpeB0304
Cp4.1LG05g13300CmaCh20G006910Cucurbita maxima (Rimu)cmacpeB591
Cp4.1LG05g13300CmaCh02G003080Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g13300CmoCh02G003030Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g13300Cla015716Watermelon (97103) v1cpewmB737
Cp4.1LG05g13300Csa6G117180Cucumber (Chinese Long) v2cpecuB746
Cp4.1LG05g13300MELO3C013477Melon (DHL92) v3.5.1cpemeB659
Cp4.1LG05g13300CSPI06G09520Wild cucumber (PI 183967)cpecpiB748
Cp4.1LG05g13300Lsi10G000170Bottle gourd (USVL1VR-Ls)cpelsiB603
Cp4.1LG05g13300MELO3C013477.2Melon (DHL92) v3.6.1cpemedB789
Cp4.1LG05g13300CsaV3_6G009950Cucumber (Chinese Long) v3cpecucB0925
Cp4.1LG05g13300Bhi10G000988Wax gourdcpewgoB0951
Cp4.1LG05g13300CsGy6G009610Cucumber (Gy14) v2cgybcpeB850
Cp4.1LG05g13300Carg19778Silver-seed gourdcarcpeB1194
Cp4.1LG05g13300Carg16111Silver-seed gourdcarcpeB0491
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g13300Cp4.1LG15g06670Cucurbita pepo (Zucchini)cpecpeB280
Cp4.1LG05g13300Cp4.1LG16g03700Cucurbita pepo (Zucchini)cpecpeB314
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g13300Wax gourdcpewgoB0934
Cp4.1LG05g13300Wax gourdcpewgoB0963
Cp4.1LG05g13300Cucurbita pepo (Zucchini)cpecpeB495
Cp4.1LG05g13300Cucumber (Gy14) v1cgycpeB0210
Cp4.1LG05g13300Cucurbita maxima (Rimu)cmacpeB552
Cp4.1LG05g13300Cucurbita maxima (Rimu)cmacpeB579
Cp4.1LG05g13300Cucurbita moschata (Rifu)cmocpeB135
Cp4.1LG05g13300Cucurbita moschata (Rifu)cmocpeB528
Cp4.1LG05g13300Bottle gourd (USVL1VR-Ls)cpelsiB607
Cp4.1LG05g13300Watermelon (Charleston Gray)cpewcgB649
Cp4.1LG05g13300Watermelon (Charleston Gray)cpewcgB652
Cp4.1LG05g13300Silver-seed gourdcarcpeB0488