CmoCh19G008440 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G008440
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPentatricopeptide repeat superfamily protein, putative
LocationCmo_Chr19 : 8217615 .. 8218709 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCGTTGCAGATGCAATTACAATCTCGCCTTCGAGTTTCGAAGATTTTGTCTTCAACAATTCGGAATTGGGAAAGAGGCTTTCCTCTGCTCCATGATCCATTGCGAACGCCGGATTTGTCACTCTCGCCGGTGGAATCTCGCTGTTTTAGCTCCAATTCCATGGATGACGATTGGAACTTCTCAAGGTCCGAGCCGAGAAGCAGCCCGCCGCAACGACGTTCTCCCCCGGATCCTCGGGAAGCTCGTCGAGTTCCTAAATTCGCCGGGGAAGTATCTGCTCCTTACCCTGAGGATAATCGGAATCAACGGTTTAATAGGCATTCGGAAGGTTCCTCGTCCCGATTCGCAAACGATGGGCCGATGTCGCGGCCAAGGAATGAGTCTTTGTCTCAGAAGGATTTTAGCTTTCTTGAAAAATTCAAGCTGAACACTGACAATCAGAGCACTAGTACAGAGAAAATCGAGCCGAGCTCTTCTGCTCAGATTTCTGAATCAATGCAGGGGAAGCAATCGCAACCACAGTGTCCTCCAGAAGCGGATGAGATATTCAGGAAAATGAAGGAAACTGGTCTAATTCCCAACGCTGTTGCTATGCTAGATGGGCTTTGCAAAGATGGGCTTATCCAAGAAGCAATGAAACTATTTGGTTTGATTCGTGAGAAGGGTACAATTCCAGAAGTTGTGGTTTACACTGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGCTTGATGAAGCAATTAGGATTTTCAGGAAAATGCAGAATAATGGCATTTCTCCCAATGCCTTCAGTTACGGCATCTTGATACAGGGACTGTACAAATCCAAACAATTAGAGGATGCCGTATCATTTTGCATTGAGATGTTAGAATCTGGGCATTCTCCAAATCTAACGACTTTTGTCGGCCTAATTGATGAGTTATGCAAAGAAAAGGGGGTGGACGAAGCTCATACTGTCATAGAAACCTTAAAACAAAAGGGATTCTTGATTAATGAGAAAGATTTAAGAGACTTCTTGAATAAAAGAGCCCCATTTTCTCCACATATCTGGGAACTAATCTTCGGGAAGAAAACGAAGGAATTTTTCTGA

mRNA sequence

ATGGGAGCGTTGCAGATGCAATTACAATCTCGCCTTCGAGTTTCGAAGATTTTGTCTTCAACAATTCGGAATTGGGAAAGAGGCTTTCCTCTGCTCCATGATCCATTGCGAACGCCGGATTTGTCACTCTCGCCGGTGGAATCTCGCTGTTTTAGCTCCAATTCCATGGATGACGATTGGAACTTCTCAAGGTCCGAGCCGAGAAGCAGCCCGCCGCAACGACGTTCTCCCCCGGATCCTCGGGAAGCTCGTCGAGTTCCTAAATTCGCCGGGGAAGTATCTGCTCCTTACCCTGAGGATAATCGGAATCAACGGTTTAATAGGCATTCGGAAGGTTCCTCGTCCCGATTCGCAAACGATGGGCCGATGTCGCGGCCAAGGAATGAGTCTTTGTCTCAGAAGGATTTTAGCTTTCTTGAAAAATTCAAGCTGAACACTGACAATCAGAGCACTAGTACAGAGAAAATCGAGCCGAGCTCTTCTGCTCAGATTTCTGAATCAATGCAGGGGAAGCAATCGCAACCACAGTGTCCTCCAGAAGCGGATGAGATATTCAGGAAAATGAAGGAAACTGGTCTAATTCCCAACGCTGTTGCTATGCTAGATGGGCTTTGCAAAGATGGGCTTATCCAAGAAGCAATGAAACTATTTGGTTTGATTCGTGAGAAGGGTACAATTCCAGAAGTTGTGGTTTACACTGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGCTTGATGAAGCAATTAGGATTTTCAGGAAAATGCAGAATAATGGCATTTCTCCCAATGCCTTCAGTTACGGCATCTTGATACAGGGACTGTACAAATCCAAACAATTAGAGGATGCCGTATCATTTTGCATTGAGATGTTAGAATCTGGGCATTCTCCAAATCTAACGACTTTTGTCGGCCTAATTGATGAGTTATGCAAAGAAAAGGGGGTGGACGAAGCTCATACTGTCATAGAAACCTTAAAACAAAAGGGATTCTTGATTAATGAGAAAGATTTAAGAGACTTCTTGAATAAAAGAGCCCCATTTTCTCCACATATCTGGGAACTAATCTTCGGGAAGAAAACGAAGGAATTTTTCTGA

Coding sequence (CDS)

ATGGGAGCGTTGCAGATGCAATTACAATCTCGCCTTCGAGTTTCGAAGATTTTGTCTTCAACAATTCGGAATTGGGAAAGAGGCTTTCCTCTGCTCCATGATCCATTGCGAACGCCGGATTTGTCACTCTCGCCGGTGGAATCTCGCTGTTTTAGCTCCAATTCCATGGATGACGATTGGAACTTCTCAAGGTCCGAGCCGAGAAGCAGCCCGCCGCAACGACGTTCTCCCCCGGATCCTCGGGAAGCTCGTCGAGTTCCTAAATTCGCCGGGGAAGTATCTGCTCCTTACCCTGAGGATAATCGGAATCAACGGTTTAATAGGCATTCGGAAGGTTCCTCGTCCCGATTCGCAAACGATGGGCCGATGTCGCGGCCAAGGAATGAGTCTTTGTCTCAGAAGGATTTTAGCTTTCTTGAAAAATTCAAGCTGAACACTGACAATCAGAGCACTAGTACAGAGAAAATCGAGCCGAGCTCTTCTGCTCAGATTTCTGAATCAATGCAGGGGAAGCAATCGCAACCACAGTGTCCTCCAGAAGCGGATGAGATATTCAGGAAAATGAAGGAAACTGGTCTAATTCCCAACGCTGTTGCTATGCTAGATGGGCTTTGCAAAGATGGGCTTATCCAAGAAGCAATGAAACTATTTGGTTTGATTCGTGAGAAGGGTACAATTCCAGAAGTTGTGGTTTACACTGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGCTTGATGAAGCAATTAGGATTTTCAGGAAAATGCAGAATAATGGCATTTCTCCCAATGCCTTCAGTTACGGCATCTTGATACAGGGACTGTACAAATCCAAACAATTAGAGGATGCCGTATCATTTTGCATTGAGATGTTAGAATCTGGGCATTCTCCAAATCTAACGACTTTTGTCGGCCTAATTGATGAGTTATGCAAAGAAAAGGGGGTGGACGAAGCTCATACTGTCATAGAAACCTTAAAACAAAAGGGATTCTTGATTAATGAGAAAGATTTAAGAGACTTCTTGAATAAAAGAGCCCCATTTTCTCCACATATCTGGGAACTAATCTTCGGGAAGAAAACGAAGGAATTTTTCTGA
Homology
[Close]
BLAST of CmoCh19G008440 vs. Swiss-Prot
Match: PP356_ARATH (Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 9.5e-75
Identity = 152/268 (56.72%), Postives = 185/268 (69.03%), Query Frame = 1 

Query: 96  PYPEDNRNQRFNRHSEGSSSRFANDGPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEK 155
           P P  NR  R  R S       A         + +LS  D  FLE+FKL  +  S  T K
Sbjct: 46  PEPLPNRPLRGERSSNSHREPPARQAHNLGKSDTTLS--DDGFLEQFKLGVNQDSRETPK 105

Query: 156 IEPSSSAQISESMQGKQSQPQCPPE-ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAM 215
            E                +P  PPE +DEIF+KMKE GLIPNAVAMLDGLCKDGL+QEAM
Sbjct: 106 PEQYPQ------------EPLPPPEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQEAM 165

Query: 216 KLFGLIREKGTIPEVVVYTAVVDGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGL 275
           KLFGL+R+KGTIPEVV+YTAVV+ FCKA K+++A RIFRKMQNNGI+PNAFSYG+L+QGL
Sbjct: 166 KLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGL 225

Query: 276 YKSKQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGVDEAHTVIETLKQKGFLINE 335
           Y    L+DAV+FC EMLESGHSPN+ TFV L+D LC+ KGV++A + I+TL QKGF +N 
Sbjct: 226 YNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKGFAVNV 285

Query: 336 KDLRDFLNKRAPFSPHIWELIFGKKTKE 363
           K +++F++KRAPF    WE IF KK  E
Sbjct: 286 KAVKEFMDKRAPFPSLAWEAIFKKKPTE 299

[Close]
BLAST of CmoCh19G008440 vs. Swiss-Prot
Match: PPR12_ARATH (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-22
Identity = 54/157 (34.39%), Postives = 92/157 (58.60%), Query Frame = 1 

Query: 180 EADEIFRKMKETGLIPNAVA---MLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVV 239
           EA+E F +M   G++P+ V    ++DG CK G I+ A K F  +  +   P+V+ YTA++
Sbjct: 334 EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 393

Query: 240 DGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHS 299
            GFC+   + EA ++F +M   G+ P++ ++  LI G  K+  ++DA      M+++G S
Sbjct: 394 SGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS 453

Query: 300 PNLTTFVGLIDELCKEKGVDEAHTVIETLKQKGFLIN 334
           PN+ T+  LID LCKE  +D A+ ++  + + G   N
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 490

[Close]
BLAST of CmoCh19G008440 vs. Swiss-Prot
Match: PPR39_ARATH (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.5e-22
Identity = 53/152 (34.87%), Postives = 85/152 (55.92%), Query Frame = 1 

Query: 181 ADEIFRKMKETGLIPNAVA---MLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVD 240
           A E+ RKM+E  +  +AV    ++DGLCKDG +  A  LF  +  KG   +++ Y  ++ 
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG 306

Query: 241 GFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSP 300
           GFC A + D+  ++ R M    ISPN  ++ +LI    K  +L +A     EM++ G +P
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP 366

Query: 301 NLTTFVGLIDELCKEKGVDEAHTVIETLKQKG 330
           N  T+  LID  CKE  ++EA  +++ +  KG
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398

[Close]
BLAST of CmoCh19G008440 vs. Swiss-Prot
Match: PP418_ARATH (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.2e-22
Identity = 54/150 (36.00%), Postives = 88/150 (58.67%), Query Frame = 1 

Query: 183 EIFRKMKETGLIPNAVA---MLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGF 242
           +IF +M + G  P++     ++ GLC+ G I EA KLF  + EK   P VV YT++++G 
Sbjct: 178 KIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGL 237

Query: 243 CKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNL 302
           C ++ +DEA+R   +M++ GI PN F+Y  L+ GL K  +   A+     M+  G  PN+
Sbjct: 238 CGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNM 297

Query: 303 TTFVGLIDELCKEKGVDEAHTVIETLKQKG 330
            T+  LI  LCKE+ + EA  +++ +  +G
Sbjct: 298 VTYTTLITGLCKEQKIQEAVELLDRMNLQG 327

[Close]
BLAST of CmoCh19G008440 vs. Swiss-Prot
Match: PP247_ARATH (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.5e-22
Identity = 46/151 (30.46%), Postives = 93/151 (61.59%), Query Frame = 1 

Query: 180 EADEIFRKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVV 239
           EA E++ +M   G+ P+ +   +++DG CK+  + EA ++F L+  KG  P++V Y+ ++
Sbjct: 333 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILI 392

Query: 240 DGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHS 299
           + +CKA+++D+ +R+FR++ + G+ PN  +Y  L+ G  +S +L  A     EM+  G  
Sbjct: 393 NSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP 452

Query: 300 PNLTTFVGLIDELCKEKGVDEAHTVIETLKQ 328
           P++ T+  L+D LC    +++A  + E +++
Sbjct: 453 PSVVTYGILLDGLCDNGELNKALEIFEKMQK 483

[Close]
BLAST of CmoCh19G008440 vs. TrEMBL
Match: A0A0A0K6C0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G029950 PE=4 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 7.7e-148
Identity = 285/366 (77.87%), Postives = 312/366 (85.25%), Query Frame = 1 

Query: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60
           MGA Q  LQSRL+VSKILSSTIR WE  FPLLH+PLRTPD SL P +SR F+SNSMDDD 
Sbjct: 1   MGAFQ--LQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDH 60

Query: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFAND 120
            FS SEP ++PPQRR PPD REARRVP+  G V+A Y  DNRNQRFNRHSEGSSSRF N+
Sbjct: 61  AFSDSEPINTPPQRRFPPDHREARRVPR--GGVTASY--DNRNQRFNRHSEGSSSRFTNE 120

Query: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEP-SSSAQISESMQGKQ-SQPQCP 180
           G  S  R+ESLSQKDFSFLEKFKLNTDNQS+  EK E  SSSA +SESM  KQ S+PQ P
Sbjct: 121 GSTSPQRSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRP 180

Query: 181 PEADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDG 240
           PEADEIF KMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVV+YTAVVDG
Sbjct: 181 PEADEIFGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTAVVDG 240

Query: 241 FCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPN 300
           FCKAEK DEAIRIFRKMQ+NGI PNAFS+G+LIQGLYK K+L+DAV+FC EMLESGH PN
Sbjct: 241 FCKAEKFDEAIRIFRKMQHNGIPPNAFSFGVLIQGLYKCKKLDDAVAFCNEMLESGHLPN 300

Query: 301 LTTFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLRDFLNKRAPFSPHIWELIFGK 360
           LTTFVGLID LC EKGVDEAH+V+ET KQKGFLI+EK LR+ LNKRAPFSP IW++ FG 
Sbjct: 301 LTTFVGLIDALCNEKGVDEAHSVVETFKQKGFLIDEKALREVLNKRAPFSPDIWKVFFGN 360

Query: 361 KTKEFF 365
           +   FF
Sbjct: 361 RKPPFF 360

[Close]
BLAST of CmoCh19G008440 vs. TrEMBL
Match: A0A061E1M4_THECC (Pentatricopeptide repeat superfamily protein, putative OS=Theobroma cacao GN=TCM_007614 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 7.8e-84
Identity = 184/335 (54.93%), Postives = 232/335 (69.25%), Query Frame = 1 

Query: 33  HDPLRTPDLSLSPVESRCFSSNSMDDDWNFSRSEPRS--SPPQRRSPPDPREARRVPKFA 92
           H P+     SLS +++R FS    D    F  ++P S  S      PP+P     +P  +
Sbjct: 21  HHPILGSPPSLSLLQTRLFS----DMRGPFRDNDPISFNSNGDGDKPPEP-----IPNRS 80

Query: 93  GEVSAPY-PEDNRNQRFNRHSEGSSSRFANDGPMSRP-RNESLSQKDFSFLEKFKLNTDN 152
            E   P+ P     +    +S GSS +  N    S P R    SQ D +FLEKFKL  DN
Sbjct: 81  LEGQRPFNPSFRETKGATLNSNGSSFQSFNTKFASDPNRKREDSQSDENFLEKFKLGLDN 140

Query: 153 QSTSTEKIEPSSSAQISESMQGKQSQPQCPPE-ADEIFRKMKETGLIPNAVAMLDGLCKD 212
           +       +PS S   +   + +Q +   PP+ ADEIF+KMKETGLIPNAVAMLDGLCKD
Sbjct: 141 KRGK----QPSDSEAAALLRRKEQEEKPSPPQDADEIFKKMKETGLIPNAVAMLDGLCKD 200

Query: 213 GLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKLDEAIRIFRKMQNNGISPNAFSY 272
           GLIQEAMKLFG +REKGTIPEVV+YTAVVDGFCKA KLD+A RIFRKMQ+ G++PN+FSY
Sbjct: 201 GLIQEAMKLFGSMREKGTIPEVVIYTAVVDGFCKAHKLDDAKRIFRKMQSKGVTPNSFSY 260

Query: 273 GILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGVDEAHTVIETLKQ 332
            +LIQGLY+  +L+DA+ FC+EMLE+GHSPN+TTFVGL+D LCKEKGV+EA +VI TLKQ
Sbjct: 261 IVLIQGLYRCNKLDDAIEFCLEMLEAGHSPNVTTFVGLVDGLCKEKGVEEAQSVIGTLKQ 320

Query: 333 KGFLINEKDLRDFLNKRAPFSPHIWELIFGKKTKE 363
           KGF++N+K +R FL+K+APFSP +WE IFGKK  +
Sbjct: 321 KGFVLNDKAVRQFLDKKAPFSPLVWEAIFGKKPSQ 342

[Close]
BLAST of CmoCh19G008440 vs. TrEMBL
Match: V4S9S2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028759mg PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 2.3e-83
Identity = 169/295 (57.29%), Postives = 219/295 (74.24%), Query Frame = 1 

Query: 76  SPPDPREARRVPKFAGEVSAPYPEDNRNQR-----FNRHSEGSSSRFANDGPMSRPRNES 135
           +PP+P     +P        P+   N+N+R     FN + +    +  +    +RPR +S
Sbjct: 54  NPPEP-----IPDRPLRGERPFTNQNQNRRSFQPRFNNYQQQQRPQQQSFQSPNRPRPKS 113

Query: 136 LS--QKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQISESMQGKQ-SQPQCPPEADEIFRK 195
               Q D +FL++FKL  D +  + ++ E     Q  +  + +  S+P  P EADEIF+K
Sbjct: 114 PDGVQSDENFLDQFKLAIDKKPDNPQQNESLGERQEQKPNRNEPISEP--PQEADEIFKK 173

Query: 196 MKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKLDE 255
           MKETGLIPNAVAMLDGLCKDGLIQEAMKLFGL+REKGTIPEVV+YTAVVDGFCKA+K D+
Sbjct: 174 MKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDD 233

Query: 256 AIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFVGLID 315
           A RIFRKMQ+NGI+PNAFSY +LIQGLYK  +LE+AV +CIEMLE+GHSPN+TTFVGL+D
Sbjct: 234 AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 293

Query: 316 ELCKEKGVDEAHTVIETLKQKGFLINEKDLRDFLNKRAPFSPHIWELIFGKKTKE 363
            LC+EKGV++A +VI TLK+KGFL+N+K +R+FL+K+APFS  +WE IFGKKT +
Sbjct: 294 GLCREKGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSSSVWEAIFGKKTSQ 341

[Close]
BLAST of CmoCh19G008440 vs. TrEMBL
Match: A0A0D2S9H9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G065500 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 3.0e-83
Identity = 184/334 (55.09%), Postives = 225/334 (67.37%), Query Frame = 1 

Query: 33  HDPLRTPDLSLSPVESRCFSSNSMDDDWNFS-RSEPRSSPPQRRSPPDPREARRV--PKF 92
           H P+     S   +++R FS        N S RS           P  P   RR   P F
Sbjct: 22  HHPVSRAAPSSCVLQTRFFSDIKRPITENESIRSNEDDDGATEHIPKRPLRGRRPFNPSF 81

Query: 93  AGEVSAPYPEDNRNQRFNRHS-EGSSSRFANDGPMSRPRNESLSQKDFSFLEKFKLNTDN 152
                A +         NR S +  +++FA+D    R      SQ D +FLEKFKL  +N
Sbjct: 82  RETEGASFDR-------NRSSFQSPNAKFASDPTKKRED----SQSDVNFLEKFKLGLEN 141

Query: 153 QSTSTEKIEPSSSAQISESMQGKQSQPQCPPEADEIFRKMKETGLIPNAVAMLDGLCKDG 212
           +    E++   S A   +  + K S P+   +ADEIF+KMKETGLIPNAVAMLDGLCKDG
Sbjct: 142 KR---ERVPSESEAMHRKEHEEKLSPPE---DADEIFKKMKETGLIPNAVAMLDGLCKDG 201

Query: 213 LIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKLDEAIRIFRKMQNNGISPNAFSYG 272
           LIQEAMKLFGL+REKGTIPEVV+YTAVVDGFCKA KL++A RIFRKMQ+ G+ PNAFSY 
Sbjct: 202 LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAHKLEDAKRIFRKMQSKGVIPNAFSYT 261

Query: 273 ILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGVDEAHTVIETLKQK 332
           +LIQGLYK K L+DA+ FC+EM+E+GHSPN+TTFVGL+D LCKEKGV+EA  VI TLKQK
Sbjct: 262 VLIQGLYKCKHLDDAIEFCLEMVEAGHSPNVTTFVGLVDGLCKEKGVEEAVNVIGTLKQK 321

Query: 333 GFLINEKDLRDFLNKRAPFSPHIWELIFGKKTKE 363
           GFL+N+K +R FL+KRAPFSP +WE IFGKKT +
Sbjct: 322 GFLVNDKAVRQFLDKRAPFSPLVWEAIFGKKTSQ 338

[Close]
BLAST of CmoCh19G008440 vs. TrEMBL
Match: A0A067FYZ4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047934mg PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.9e-82
Identity = 169/296 (57.09%), Postives = 220/296 (74.32%), Query Frame = 1 

Query: 75  RSPPDPREARRVPKFAGEVSAPYPEDNRNQR-----FNRHSEGS----SSRFANDGPMSR 134
           ++PP+P     +P        P+   N+N+R     FN + +       S  + +GP  R
Sbjct: 53  QNPPEP-----IPDRPLRGERPFTNQNQNRRSFQPRFNNYQQQQRPQQQSFQSPNGP--R 112

Query: 135 PRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQISESMQGKQ-SQPQCPPEADEI 194
           P++    Q D +FL++FKL  D +  + ++ E     Q  +  + +  S+P  P EADEI
Sbjct: 113 PKSPDGVQSDENFLDQFKLAIDKKPGNPQQNESLGQRQEQKPNRNEPISEP--PQEADEI 172

Query: 195 FRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEK 254
           F+KMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGL+REKGTIPEVV+YTAVVDGFCKA+K
Sbjct: 173 FKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK 232

Query: 255 LDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFVG 314
            D+A RIFRKMQ+NGI+PNAFSY +LIQGLYK  +LE+AV +CIEMLE+GHSPN+TTFVG
Sbjct: 233 FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVG 292

Query: 315 LIDELCKEKGVDEAHTVIETLKQKGFLINEKDLRDFLNKRAPFSPHIWELIFGKKT 361
           L+D LC+E+GV++A +VI TLK+KGFL+N+K +R+FL+K+APFS  +WE IFGKKT
Sbjct: 293 LVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSSSVWEAIFGKKT 339

[Close]
BLAST of CmoCh19G008440 vs. TAIR10
Match: AT4G38150.1 (AT4G38150.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 282.0 bits (720), Expect = 5.4e-76
Identity = 152/268 (56.72%), Postives = 185/268 (69.03%), Query Frame = 1 

Query: 96  PYPEDNRNQRFNRHSEGSSSRFANDGPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEK 155
           P P  NR  R  R S       A         + +LS  D  FLE+FKL  +  S  T K
Sbjct: 46  PEPLPNRPLRGERSSNSHREPPARQAHNLGKSDTTLS--DDGFLEQFKLGVNQDSRETPK 105

Query: 156 IEPSSSAQISESMQGKQSQPQCPPE-ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAM 215
            E                +P  PPE +DEIF+KMKE GLIPNAVAMLDGLCKDGL+QEAM
Sbjct: 106 PEQYPQ------------EPLPPPEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQEAM 165

Query: 216 KLFGLIREKGTIPEVVVYTAVVDGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGL 275
           KLFGL+R+KGTIPEVV+YTAVV+ FCKA K+++A RIFRKMQNNGI+PNAFSYG+L+QGL
Sbjct: 166 KLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGL 225

Query: 276 YKSKQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGVDEAHTVIETLKQKGFLINE 335
           Y    L+DAV+FC EMLESGHSPN+ TFV L+D LC+ KGV++A + I+TL QKGF +N 
Sbjct: 226 YNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKGFAVNV 285

Query: 336 KDLRDFLNKRAPFSPHIWELIFGKKTKE 363
           K +++F++KRAPF    WE IF KK  E
Sbjct: 286 KAVKEFMDKRAPFPSLAWEAIFKKKPTE 299

[Close]
BLAST of CmoCh19G008440 vs. TAIR10
Match: AT5G03560.2 (AT5G03560.2 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-29
Identity = 97/325 (29.85%), Postives = 156/325 (48.00%), Query Frame = 1 

Query: 49  RCFSSNSMDDDWNFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPY----PEDNRNQ 108
           R F+  S    W        SSP    +    +E +   +F+  + A +    P + R +
Sbjct: 46  RAFAFYSSSSSW-------WSSPDDLTASSKRKEKKTTERFSAVIDAVHDRKLPPELRGR 105

Query: 109 R-FNRHSEGSSSRFANDGPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTE--------K 168
           R F R    S+S F         R  S   K  +    F L+ D+    TE        K
Sbjct: 106 RDFVRSKRNSNSLFPWFCGGVFARQFSSETKRVNTKVNFSLSDDDSDEETETQVTEDSKK 165

Query: 169 IEPSSSAQISESMQGKQSQPQCPPEADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMK 228
            EP        S +    +P+ P    EIF KM+  G    AV M D L KDG   EA++
Sbjct: 166 QEPPPPPYDPFSKKPAIEEPEDPKNLQEIFHKMRTEGFTNEAVKMFDALSKDGRTHEALE 225

Query: 229 LFGLIREKGTIPEVVVYTAVVDGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGL- 288
           LF  I++K  +P+VV +TA+V+ +  A +  E +++F +M  +G+SPNA++Y +LI+GL 
Sbjct: 226 LFSQIKDKNRMPDVVAHTAIVEAYANAGQAKETLKVFMRMLASGVSPNAYTYSVLIKGLA 285

Query: 289 YKSKQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGVDEAHTVIETLKQKGFLINE 348
              K  +DA  + +EM+ +G SPN  T+  + +   +E   + A  +++ +K KGF+ +E
Sbjct: 286 ADGKTHKDAKKYLLEMMGNGMSPNAATYTAVFEAFVREGKEESARELLQEMKGKGFVPDE 345

Query: 349 KDLRDFLN-KRAPFSPHIWELIFGK 359
           K +R+ L  KR      +  L+F K
Sbjct: 346 KAVREALEYKRGQVFRTVINLLFDK 363

[Close]
BLAST of CmoCh19G008440 vs. TAIR10
Match: AT1G05670.1 (AT1G05670.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 108.6 bits (270), Expect = 8.2e-24
Identity = 54/157 (34.39%), Postives = 92/157 (58.60%), Query Frame = 1 

Query: 180 EADEIFRKMKETGLIPNAVA---MLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVV 239
           EA+E F +M   G++P+ V    ++DG CK G I+ A K F  +  +   P+V+ YTA++
Sbjct: 334 EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 393

Query: 240 DGFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHS 299
            GFC+   + EA ++F +M   G+ P++ ++  LI G  K+  ++DA      M+++G S
Sbjct: 394 SGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS 453

Query: 300 PNLTTFVGLIDELCKEKGVDEAHTVIETLKQKGFLIN 334
           PN+ T+  LID LCKE  +D A+ ++  + + G   N
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 490

[Close]
BLAST of CmoCh19G008440 vs. TAIR10
Match: AT1G12775.1 (AT1G12775.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-23
Identity = 53/152 (34.87%), Postives = 85/152 (55.92%), Query Frame = 1 

Query: 181 ADEIFRKMKETGLIPNAVA---MLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVD 240
           A E+ RKM+E  +  +AV    ++DGLCKDG +  A  LF  +  KG   +++ Y  ++ 
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG 306

Query: 241 GFCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSP 300
           GFC A + D+  ++ R M    ISPN  ++ +LI    K  +L +A     EM++ G +P
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP 366

Query: 301 NLTTFVGLIDELCKEKGVDEAHTVIETLKQKG 330
           N  T+  LID  CKE  ++EA  +++ +  KG
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398

[Close]
BLAST of CmoCh19G008440 vs. TAIR10
Match: AT5G46100.1 (AT5G46100.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-23
Identity = 54/150 (36.00%), Postives = 88/150 (58.67%), Query Frame = 1 

Query: 183 EIFRKMKETGLIPNAVA---MLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGF 242
           +IF +M + G  P++     ++ GLC+ G I EA KLF  + EK   P VV YT++++G 
Sbjct: 178 KIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGL 237

Query: 243 CKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNL 302
           C ++ +DEA+R   +M++ GI PN F+Y  L+ GL K  +   A+     M+  G  PN+
Sbjct: 238 CGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNM 297

Query: 303 TTFVGLIDELCKEKGVDEAHTVIETLKQKG 330
            T+  LI  LCKE+ + EA  +++ +  +G
Sbjct: 298 VTYTTLITGLCKEQKIQEAVELLDRMNLQG 327

[Close]
BLAST of CmoCh19G008440 vs. NCBI nr
Match: gi|659124148|ref|XP_008462006.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis melo])

HSP 1 Score: 536.2 bits (1380), Expect = 4.5e-149
Identity = 285/360 (79.17%), Postives = 308/360 (85.56%), Query Frame = 1 

Query: 7   QLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDWNFSRSE 66
           Q QSRL+VSKILSS+IR WE  FPLLH+PLRTPD SLSP  SR FSSNSMDDD  FS SE
Sbjct: 5   QFQSRLQVSKILSSSIRKWEIDFPLLHNPLRTPDFSLSPAPSRRFSSNSMDDDRAFSESE 64

Query: 67  PRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANDGPMSRP 126
           PR++PPQRR PPD REARRVP+  G V+  Y  DNRNQRFNRHSEGSSSRF N+G  SR 
Sbjct: 65  PRNTPPQRRFPPDHREARRVPR--GGVTDSY--DNRNQRFNRHSEGSSSRFTNEGSTSRQ 124

Query: 127 RNESLSQKDFSFLEKFKLNTDNQSTSTEKIEP-SSSAQISESMQGKQ-SQPQCPPEADEI 186
           R+ESLSQKDFSFLEKFKLNTDNQS+  EK E  SSSA +SESMQ KQ SQ Q PP ADEI
Sbjct: 125 RSESLSQKDFSFLEKFKLNTDNQSSGNEKTEENSSSAPVSESMQEKQQSQHQRPPAADEI 184

Query: 187 FRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEK 246
           FRKMKE+GLIPNAVAMLDGLCKDGLIQEAMKLF LIREKGTIPEVV+YTAVVDGFCKAEK
Sbjct: 185 FRKMKESGLIPNAVAMLDGLCKDGLIQEAMKLFALIREKGTIPEVVIYTAVVDGFCKAEK 244

Query: 247 LDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFVG 306
            DEAIRIFRKMQN GISPNAFS+G+LIQGLYK K+L+DAV+FC EMLESGH PNLTTFVG
Sbjct: 245 FDEAIRIFRKMQNKGISPNAFSFGVLIQGLYKCKKLDDAVAFCNEMLESGHLPNLTTFVG 304

Query: 307 LIDELCKEKGVDEAHTVIETLKQKGFLINEKDLRDFLNKRAPFSPHIWELIFGKKTKEFF 365
           LID LC EKGVDEAH V+ET KQKGFLI+EK LR+FLNKRAPFSP IW++ FG K   FF
Sbjct: 305 LIDVLCSEKGVDEAHNVVETFKQKGFLIDEKALREFLNKRAPFSPDIWKVFFGNKKAPFF 360

[Close]
BLAST of CmoCh19G008440 vs. NCBI nr
Match: gi|449453638|ref|XP_004144563.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis sativus])

HSP 1 Score: 531.6 bits (1368), Expect = 1.1e-147
Identity = 285/366 (77.87%), Postives = 312/366 (85.25%), Query Frame = 1 

Query: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60
           MGA Q  LQSRL+VSKILSSTIR WE  FPLLH+PLRTPD SL P +SR F+SNSMDDD 
Sbjct: 1   MGAFQ--LQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDH 60

Query: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFAND 120
            FS SEP ++PPQRR PPD REARRVP+  G V+A Y  DNRNQRFNRHSEGSSSRF N+
Sbjct: 61  AFSDSEPINTPPQRRFPPDHREARRVPR--GGVTASY--DNRNQRFNRHSEGSSSRFTNE 120

Query: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEP-SSSAQISESMQGKQ-SQPQCP 180
           G  S  R+ESLSQKDFSFLEKFKLNTDNQS+  EK E  SSSA +SESM  KQ S+PQ P
Sbjct: 121 GSTSPQRSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRP 180

Query: 181 PEADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDG 240
           PEADEIF KMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVV+YTAVVDG
Sbjct: 181 PEADEIFGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTAVVDG 240

Query: 241 FCKAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPN 300
           FCKAEK DEAIRIFRKMQ+NGI PNAFS+G+LIQGLYK K+L+DAV+FC EMLESGH PN
Sbjct: 241 FCKAEKFDEAIRIFRKMQHNGIPPNAFSFGVLIQGLYKCKKLDDAVAFCNEMLESGHLPN 300

Query: 301 LTTFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLRDFLNKRAPFSPHIWELIFGK 360
           LTTFVGLID LC EKGVDEAH+V+ET KQKGFLI+EK LR+ LNKRAPFSP IW++ FG 
Sbjct: 301 LTTFVGLIDALCNEKGVDEAHSVVETFKQKGFLIDEKALREVLNKRAPFSPDIWKVFFGN 360

Query: 361 KTKEFF 365
           +   FF
Sbjct: 361 RKPPFF 360

[Close]
BLAST of CmoCh19G008440 vs. NCBI nr
Match: gi|590689066|ref|XP_007043123.1| (Pentatricopeptide repeat superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 318.9 bits (816), Expect = 1.1e-83
Identity = 184/335 (54.93%), Postives = 232/335 (69.25%), Query Frame = 1 

Query: 33  HDPLRTPDLSLSPVESRCFSSNSMDDDWNFSRSEPRS--SPPQRRSPPDPREARRVPKFA 92
           H P+     SLS +++R FS    D    F  ++P S  S      PP+P     +P  +
Sbjct: 21  HHPILGSPPSLSLLQTRLFS----DMRGPFRDNDPISFNSNGDGDKPPEP-----IPNRS 80

Query: 93  GEVSAPY-PEDNRNQRFNRHSEGSSSRFANDGPMSRP-RNESLSQKDFSFLEKFKLNTDN 152
            E   P+ P     +    +S GSS +  N    S P R    SQ D +FLEKFKL  DN
Sbjct: 81  LEGQRPFNPSFRETKGATLNSNGSSFQSFNTKFASDPNRKREDSQSDENFLEKFKLGLDN 140

Query: 153 QSTSTEKIEPSSSAQISESMQGKQSQPQCPPE-ADEIFRKMKETGLIPNAVAMLDGLCKD 212
           +       +PS S   +   + +Q +   PP+ ADEIF+KMKETGLIPNAVAMLDGLCKD
Sbjct: 141 KRGK----QPSDSEAAALLRRKEQEEKPSPPQDADEIFKKMKETGLIPNAVAMLDGLCKD 200

Query: 213 GLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKLDEAIRIFRKMQNNGISPNAFSY 272
           GLIQEAMKLFG +REKGTIPEVV+YTAVVDGFCKA KLD+A RIFRKMQ+ G++PN+FSY
Sbjct: 201 GLIQEAMKLFGSMREKGTIPEVVIYTAVVDGFCKAHKLDDAKRIFRKMQSKGVTPNSFSY 260

Query: 273 GILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGVDEAHTVIETLKQ 332
            +LIQGLY+  +L+DA+ FC+EMLE+GHSPN+TTFVGL+D LCKEKGV+EA +VI TLKQ
Sbjct: 261 IVLIQGLYRCNKLDDAIEFCLEMLEAGHSPNVTTFVGLVDGLCKEKGVEEAQSVIGTLKQ 320

Query: 333 KGFLINEKDLRDFLNKRAPFSPHIWELIFGKKTKE 363
           KGF++N+K +R FL+K+APFSP +WE IFGKK  +
Sbjct: 321 KGFVLNDKAVRQFLDKKAPFSPLVWEAIFGKKPSQ 342

[Close]
BLAST of CmoCh19G008440 vs. NCBI nr
Match: gi|567859442|ref|XP_006422375.1| (hypothetical protein CICLE_v10028759mg [Citrus clementina])

HSP 1 Score: 317.4 bits (812), Expect = 3.3e-83
Identity = 169/295 (57.29%), Postives = 219/295 (74.24%), Query Frame = 1 

Query: 76  SPPDPREARRVPKFAGEVSAPYPEDNRNQR-----FNRHSEGSSSRFANDGPMSRPRNES 135
           +PP+P     +P        P+   N+N+R     FN + +    +  +    +RPR +S
Sbjct: 54  NPPEP-----IPDRPLRGERPFTNQNQNRRSFQPRFNNYQQQQRPQQQSFQSPNRPRPKS 113

Query: 136 LS--QKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQISESMQGKQ-SQPQCPPEADEIFRK 195
               Q D +FL++FKL  D +  + ++ E     Q  +  + +  S+P  P EADEIF+K
Sbjct: 114 PDGVQSDENFLDQFKLAIDKKPDNPQQNESLGERQEQKPNRNEPISEP--PQEADEIFKK 173

Query: 196 MKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKLDE 255
           MKETGLIPNAVAMLDGLCKDGLIQEAMKLFGL+REKGTIPEVV+YTAVVDGFCKA+K D+
Sbjct: 174 MKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDD 233

Query: 256 AIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFVGLID 315
           A RIFRKMQ+NGI+PNAFSY +LIQGLYK  +LE+AV +CIEMLE+GHSPN+TTFVGL+D
Sbjct: 234 AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 293

Query: 316 ELCKEKGVDEAHTVIETLKQKGFLINEKDLRDFLNKRAPFSPHIWELIFGKKTKE 363
            LC+EKGV++A +VI TLK+KGFL+N+K +R+FL+K+APFS  +WE IFGKKT +
Sbjct: 294 GLCREKGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSSSVWEAIFGKKTSQ 341

[Close]
BLAST of CmoCh19G008440 vs. NCBI nr
Match: gi|823259209|ref|XP_012462310.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g38150 isoform X1 [Gossypium raimondii])

HSP 1 Score: 317.0 bits (811), Expect = 4.3e-83
Identity = 184/334 (55.09%), Postives = 225/334 (67.37%), Query Frame = 1 

Query: 33  HDPLRTPDLSLSPVESRCFSSNSMDDDWNFS-RSEPRSSPPQRRSPPDPREARRV--PKF 92
           H P+     S   +++R FS        N S RS           P  P   RR   P F
Sbjct: 22  HHPVSRAAPSSCVLQTRFFSDIKRPITENESIRSNEDDDGATEHIPKRPLRGRRPFNPSF 81

Query: 93  AGEVSAPYPEDNRNQRFNRHS-EGSSSRFANDGPMSRPRNESLSQKDFSFLEKFKLNTDN 152
                A +         NR S +  +++FA+D    R      SQ D +FLEKFKL  +N
Sbjct: 82  RETEGASFDR-------NRSSFQSPNAKFASDPTKKRED----SQSDVNFLEKFKLGLEN 141

Query: 153 QSTSTEKIEPSSSAQISESMQGKQSQPQCPPEADEIFRKMKETGLIPNAVAMLDGLCKDG 212
           +    E++   S A   +  + K S P+   +ADEIF+KMKETGLIPNAVAMLDGLCKDG
Sbjct: 142 KR---ERVPSESEAMHRKEHEEKLSPPE---DADEIFKKMKETGLIPNAVAMLDGLCKDG 201

Query: 213 LIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKLDEAIRIFRKMQNNGISPNAFSYG 272
           LIQEAMKLFGL+REKGTIPEVV+YTAVVDGFCKA KL++A RIFRKMQ+ G+ PNAFSY 
Sbjct: 202 LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAHKLEDAKRIFRKMQSKGVIPNAFSYT 261

Query: 273 ILIQGLYKSKQLEDAVSFCIEMLESGHSPNLTTFVGLIDELCKEKGVDEAHTVIETLKQK 332
           +LIQGLYK K L+DA+ FC+EM+E+GHSPN+TTFVGL+D LCKEKGV+EA  VI TLKQK
Sbjct: 262 VLIQGLYKCKHLDDAIEFCLEMVEAGHSPNVTTFVGLVDGLCKEKGVEEAVNVIGTLKQK 321

Query: 333 GFLINEKDLRDFLNKRAPFSPHIWELIFGKKTKE 363
           GFL+N+K +R FL+KRAPFSP +WE IFGKKT +
Sbjct: 322 GFLVNDKAVRQFLDKRAPFSPLVWEAIFGKKTSQ 338

The following BLAST results are available for this feature:
BLAST of CmoCh19G008440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP356_ARATH9.5e-7556.72Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN... [more]
PPR12_ARATH1.4e-2234.39Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop... [more]
PPR39_ARATH2.5e-2234.87Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidop... [more]
PP418_ARATH3.2e-2236.00Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN... [more]
PP247_ARATH5.5e-2230.46Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop... [more]
BLAST of CmoCh19G008440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6C0_CUCSA7.7e-14877.87Uncharacterized protein OS=Cucumis sativus GN=Csa_7G029950 PE=4 SV=1[more]
A0A061E1M4_THECC7.8e-8454.93Pentatricopeptide repeat superfamily protein, putative OS=Theobroma cacao GN=TCM... [more]
V4S9S2_9ROSI2.3e-8357.29Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028759mg PE=4 SV=1[more]
A0A0D2S9H9_GOSRA3.0e-8355.09Uncharacterized protein OS=Gossypium raimondii GN=B456_013G065500 PE=4 SV=1[more]
A0A067FYZ4_CITSI1.9e-8257.09Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047934mg PE=4 SV=1[more]
BLAST of CmoCh19G008440 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38150.15.4e-7656.72 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G03560.22.2e-2929.85 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G05670.18.2e-2434.39 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT1G12775.11.4e-2334.87 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G46100.11.8e-2336.00 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CmoCh19G008440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659124148|ref|XP_008462006.1|4.5e-14979.17PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis melo][more]
gi|449453638|ref|XP_004144563.1|1.1e-14777.87PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis sativu... [more]
gi|590689066|ref|XP_007043123.1|1.1e-8354.93Pentatricopeptide repeat superfamily protein, putative [Theobroma cacao][more]
gi|567859442|ref|XP_006422375.1|3.3e-8357.29hypothetical protein CICLE_v10028759mg [Citrus clementina][more]
gi|823259209|ref|XP_012462310.1|4.3e-8355.09PREDICTED: pentatricopeptide repeat-containing protein At4g38150 isoform X1 [Gos... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0030117 membrane coat
molecular_function GO:0003674 molecular_function
molecular_function GO:0008565 protein transporter activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G008440.1CmoCh19G008440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 199..224
score: 5.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 227..276
score: 7.8
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 265..298
score: 1.0E-5coord: 230..264
score: 1.7E-10coord: 199..227
score: 7.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 193..227
score: 8.583coord: 228..262
score: 13.154coord: 298..332
score: 8.583coord: 263..297
score: 10
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 64..342
score: 2.2E
NoneNo IPR availablePANTHERPTHR24015:SF337SUBFAMILY NOT NAMEDcoord: 64..342
score: 2.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G008440Cucsa.100010Cucumber (Gy14) v1cgycmoB0210
CmoCh19G008440CmaCh11G012940Cucurbita maxima (Rimu)cmacmoB144
CmoCh19G008440CmaCh19G008270Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G008440Cla015717Watermelon (97103) v1cmowmB496
CmoCh19G008440Csa7G029950Cucumber (Chinese Long) v2cmocuB518
CmoCh19G008440MELO3C024165Melon (DHL92) v3.5.1cmomeB452
CmoCh19G008440ClCG02G003160Watermelon (Charleston Gray)cmowcgB459
CmoCh19G008440CSPI07G02380Wild cucumber (PI 183967)cmocpiB524
CmoCh19G008440Lsi11G013190Bottle gourd (USVL1VR-Ls)cmolsiB457
CmoCh19G008440Cp4.1LG15g06670Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G008440Cp4.1LG04g04250Cucurbita pepo (Zucchini)cmocpeB497
CmoCh19G008440MELO3C024165.2Melon (DHL92) v3.6.1cmomedB521
CmoCh19G008440CsaV3_7G002250Cucumber (Chinese Long) v3cmocucB0622
CmoCh19G008440Cla97C02G029680Watermelon (97103) v2cmowmbB512
CmoCh19G008440Bhi05G001326Wax gourdcmowgoB0653
CmoCh19G008440CsGy7G002090Cucumber (Gy14) v2cgybcmoB927
CmoCh19G008440Carg04123Silver-seed gourdcarcmoB0286
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G008440Cucurbita maxima (Rimu)cmacmoB145
CmoCh19G008440Cucurbita maxima (Rimu)cmacmoB549
CmoCh19G008440Cucurbita maxima (Rimu)cmacmoB596
CmoCh19G008440Wild cucumber (PI 183967)cmocpiB520
CmoCh19G008440Cucumber (Chinese Long) v2cmocuB513
CmoCh19G008440Melon (DHL92) v3.5.1cmomeB443
CmoCh19G008440Watermelon (Charleston Gray)cmowcgB461
CmoCh19G008440Cucurbita pepo (Zucchini)cmocpeB483
CmoCh19G008440Cucurbita pepo (Zucchini)cmocpeB492
CmoCh19G008440Bottle gourd (USVL1VR-Ls)cmolsiB452
CmoCh19G008440Cucumber (Gy14) v2cgybcmoB763
CmoCh19G008440Melon (DHL92) v3.6.1cmomedB514
CmoCh19G008440Silver-seed gourdcarcmoB0471
CmoCh19G008440Silver-seed gourdcarcmoB1152
CmoCh19G008440Silver-seed gourdcarcmoB1429
CmoCh19G008440Silver-seed gourdcarcmoB1430
CmoCh19G008440Cucumber (Chinese Long) v3cmocucB0617
CmoCh19G008440Cucurbita moschata (Rifu)cmocmoB108
CmoCh19G008440Cucurbita moschata (Rifu)cmocmoB113
CmoCh19G008440Cucurbita moschata (Rifu)cmocmoB381
CmoCh19G008440Cucurbita moschata (Rifu)cmocmoB386
CmoCh19G008440Cucumber (Gy14) v1cgycmoB0294