CsaV3_7G002250 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G002250
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	pentatricopeptide repeat-containing protein At4g38150
Location	chr7 : 1777269 .. 1780028 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGTCACTTGGCTAAAACCCTACTCCCATCCCCTCTCCTCCCAACCCCATTTGAACTTTCATCAAATACCCTCTCGTACCAATATTTCTTCATAATTTCTTGGTTTAAATTTCTCATGGGGGCGTTTCAACTTCAATCTCGTCTTCAAGTTTCGAAGATTTTGTCTTCAACTATTCGGAAATGGGAAATAGATTTTCCTCTCCTCCACAACCCATTGCGAACGCCGGATTTCTCACTCTACCCTGCGCAATCTCGTCGTTTTGCCTCCAATTCCATGGATGACGATCATGCCTTCTCGGATTCCGAGCCGATAAACACTCCGCCGCAACGTCGTTTTCCTCCAGATCATCGCGAAGCTCGTCGTGTTCCCAGAGGGGGAGTAACTGCTTCTTACGATAATCGAAATCAACGCTTTAATAGGCATTCAGAAGGTTCCTCTTCTCGATTCACAAATGAAGGGTCGACTTCGCCACAAAGGAGTGAGTCTTTATCTCAGAAAGATTTTAGCTTTCTTGAAAAATTCAAGCTGAATACTGATAATCAGAGTAGTGGTAAAGAGAAAACTGAGGAGAACTCTTCTTCTGCTCCGGTGTCTGAATCAATGCTGGAGAAGCAGCAGTCGGAACCGCAGCGTCCTCCAGAAGCTGATGAGATATTCGGGAAAATGAAGGAGACTGGTTTAATTCCCAATGCTGTTGCTATGCTTGATGGGCTTTGTAAAGATGGACTTATACAAGAAGCAATGAAGCTTTTTGGTTTGATTCGTGAGAAAGGTACAATTCCAGAAGTTGTGATTTACACTGCTGTTGTTGATGGGTTTTGCAAGGCGGAGAAGTTTGATGAAGCGATTAGGATTTTCAGGAAAATGCAGCATAACGGTATTCCTCCAAATGCCTTCAGTTTTGGTGTCTTGATTCAGGGATTGTACAAATGCAAAAAGTTAGATGATGCTGTAGCATTTTGCAATGAGATGTTAGAATCTGGGCATTTACCAAATCTTACCACTTTTGTTGGCCTAATTGATGCGTTATGCAATGAGAAGGGTGTGGATGAAGCTCATAGTGTTGTAGAAACCTTTAAACAAAAGGGATTCTTGATTGATGAGAAAGCTTTAAGGGAAGTTTTGAATAAAAGAGCCCCATTTTCACCAGATATCTGGAAAGTGTTCTTTGGTAATAGAAAACCCCCATTTTTCTGAGATTGCTGTCGTAGTGTTGTAAGTCTTCTCTCTTTTCCCTTTTATGTAATTTCTTAGATAATTCAAGTTATGTTCACTATAGATTATATGGAGTAATTTGAGTAGTTGACCGATATGTTTGCAACCAAAATTGCCTTCAATCTTTTGATAGCTTCTATAAGTTTTCACGAATGGGTACAAATATTATAAGATACGAAACAAGGAAAAGGAGAATATAGCCCGTTTGTTACCTTGGTATTTACAATCTTTACAATTTATCATATACTATTTAGTTTCATCAATCTCACTTTTTTTTTTAATATTTTCATTAGAATTCTGGGATGGTTGTGATTTATAAAAGAGGAAAAACAACCTTTCATTAGAAAAAAAAATGAAGAAATACACGGAAATCCAAAAAAAACCATGCACACAAAAAGGAGTGCCACTAGAGAAACGGTGTCTAGTTGTAAAATGATCCCTAACGAATAATTACACACAACCTCCTTATGCTTGTGTATTTTTTTGAATGAGAAACACAACTTTAATTGAGAAAGAATGAGAGAATAGAATGCATGGGTACAGAAAAACCAAACCCACAAAAAGAAGGAATCTCATTATAAGAAGGGACTCCAACTATACAAAATTATGTTCATATAATAATTACAAAAGATCTTTGATATTGAGGGCAAGCGAAGAAGAGAACATAAGCCTTCGCTTCCCATCTGAACACCCCACTATTTCTCTTGTCCCCAAGCACCACAGAATAGCACAAACGCTGGCACATCAGAGAAAGCGGCCTGCCTTTCTTACCAAACGGAGGAACTCCTTGATCATATCTTTATCAACTCTGGGACAAACACTGCTCAAGCCAAAAGTCTGGAAGAAGAAAGAGTCCCAAACACTCGTTCTCATTGTTATCTTCATTCAGGAATATCGTTACCCAAGCTTATTTTGATTTCTTCCCATCAAGCTTACTGCACTAGTTTACAAGTTTTAGAATCACTCAACAAAAAGATAGCCCAACCTATAACCTGTCATACGATAAGTGCACACTTTAAATTAAGTTAAAAGCTTCCAAAATCTTACTAAGCATAAACGTACAAGAACATACAAGAAGTCACATAAGCATAAACATACAAGAACTTAGGTGTAAATCTTACTTAGCGTTGCTGCTTCCCCCTCCCTCTCTTTCTGCTCCTTACTCATCTTCTTCTTCTTATCAACACCAGCTGGAAGTGCGAAAGTTTACATGGATAAATACCATTTTGGGCTTAACCAGTTGAAAAGGTTCAATTTTCCTTTTAAAAATGATACACAAAATTCAAATTTCTGGTCTGCATCAGCATATTCATCACTTTTATCACAAACTAAGCATTATGTGTGCATTTCTCACTACATCATTGATTACATTTCAATCCAGACAATGTTTTATATTGAACTCATGGGACAACCCGCCTTAAGGAAACTTGTAGGAAATTAATTCATGGACAGATTGTCACCATGGTTTGAACTCATGACCTCTTAGTTAGATATTGAGAACTCTTTTTTATCACTAGAGCAATTCATTCCTTGATGTTTTTC

mRNA sequence

ATGGGGGCGTTTCAACTTCAATCTCGTCTTCAAGTTTCGAAGATTTTGTCTTCAACTATTCGGAAATGGGAAATAGATTTTCCTCTCCTCCACAACCCATTGCGAACGCCGGATTTCTCACTCTACCCTGCGCAATCTCGTCGTTTTGCCTCCAATTCCATGGATGACGATCATGCCTTCTCGGATTCCGAGCCGATAAACACTCCGCCGCAACGTCGTTTTCCTCCAGATCATCGCGAAGCTCGTCGTGTTCCCAGAGGGGGAGTAACTGCTTCTTACGATAATCGAAATCAACGCTTTAATAGGCATTCAGAAGGTTCCTCTTCTCGATTCACAAATGAAGGGTCGACTTCGCCACAAAGGAGTGAGTCTTTATCTCAGAAAGATTTTAGCTTTCTTGAAAAATTCAAGCTGAATACTGATAATCAGAGTAGTGGTAAAGAGAAAACTGAGGAGAACTCTTCTTCTGCTCCGGTGTCTGAATCAATGCTGGAGAAGCAGCAGTCGGAACCGCAGCGTCCTCCAGAAGCTGATGAGATATTCGGGAAAATGAAGGAGACTGGTTTAATTCCCAATGCTGTTGCTATGCTTGATGGGCTTTGTAAAGATGGACTTATACAAGAAGCAATGAAGCTTTTTGGTTTGATTCGTGAGAAAGGTACAATTCCAGAAGTTGTGATTTACACTGCTGTTGTTGATGGGTTTTGCAAGGCGGAGAAGTTTGATGAAGCGATTAGGATTTTCAGGAAAATGCAGCATAACGGTATTCCTCCAAATGCCTTCAGTTTTGGTGTCTTGATTCAGGGATTGTACAAATGCAAAAAGTTAGATGATGCTGTAGCATTTTGCAATGAGATGTTAGAATCTGGGCATTTACCAAATCTTACCACTTTTGTTGGCCTAATTGATGCGTTATGCAATGAGAAGGGTGTGGATGAAGCTCATAGTGTTGTAGAAACCTTTAAACAAAAGGGATTCTTGATTGATGAGAAAGCTTTAAGGGAAGTTTTGAATAAAAGAGCCCCATTTTCACCAGATATCTGGAAAGTGTTCTTTGGTAATAGAAAACCCCCATTTTTCTGA

Coding sequence (CDS)

ATGGGGGCGTTTCAACTTCAATCTCGTCTTCAAGTTTCGAAGATTTTGTCTTCAACTATTCGGAAATGGGAAATAGATTTTCCTCTCCTCCACAACCCATTGCGAACGCCGGATTTCTCACTCTACCCTGCGCAATCTCGTCGTTTTGCCTCCAATTCCATGGATGACGATCATGCCTTCTCGGATTCCGAGCCGATAAACACTCCGCCGCAACGTCGTTTTCCTCCAGATCATCGCGAAGCTCGTCGTGTTCCCAGAGGGGGAGTAACTGCTTCTTACGATAATCGAAATCAACGCTTTAATAGGCATTCAGAAGGTTCCTCTTCTCGATTCACAAATGAAGGGTCGACTTCGCCACAAAGGAGTGAGTCTTTATCTCAGAAAGATTTTAGCTTTCTTGAAAAATTCAAGCTGAATACTGATAATCAGAGTAGTGGTAAAGAGAAAACTGAGGAGAACTCTTCTTCTGCTCCGGTGTCTGAATCAATGCTGGAGAAGCAGCAGTCGGAACCGCAGCGTCCTCCAGAAGCTGATGAGATATTCGGGAAAATGAAGGAGACTGGTTTAATTCCCAATGCTGTTGCTATGCTTGATGGGCTTTGTAAAGATGGACTTATACAAGAAGCAATGAAGCTTTTTGGTTTGATTCGTGAGAAAGGTACAATTCCAGAAGTTGTGATTTACACTGCTGTTGTTGATGGGTTTTGCAAGGCGGAGAAGTTTGATGAAGCGATTAGGATTTTCAGGAAAATGCAGCATAACGGTATTCCTCCAAATGCCTTCAGTTTTGGTGTCTTGATTCAGGGATTGTACAAATGCAAAAAGTTAGATGATGCTGTAGCATTTTGCAATGAGATGTTAGAATCTGGGCATTTACCAAATCTTACCACTTTTGTTGGCCTAATTGATGCGTTATGCAATGAGAAGGGTGTGGATGAAGCTCATAGTGTTGTAGAAACCTTTAAACAAAAGGGATTCTTGATTGATGAGAAAGCTTTAAGGGAAGTTTTGAATAAAAGAGCCCCATTTTCACCAGATATCTGGAAAGTGTTCTTTGGTAATAGAAAACCCCCATTTTTCTGA

Protein sequence

MGAFQLQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDHAFSDSEPINTPPQRRFPPDHREARRVPRGGVTASYDNRNQRFNRHSEGSSSRFTNEGSTSPQRSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRPPEADEIFGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTAVVDGFCKAEKFDEAIRIFRKMQHNGIPPNAFSFGVLIQGLYKCKKLDDAVAFCNEMLESGHLPNLTTFVGLIDALCNEKGVDEAHSVVETFKQKGFLIDEKALREVLNKRAPFSPDIWKVFFGNRKPPFF

Homology

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BLAST of CsaV3_7G002250 vs. NCBI nr
Match: XP_004144563.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis sativus] >KGN43381.1 hypothetical protein Csa_7G029950 [Cucumis sativus])

HSP 1 Score: 480.3 bits (1235), Expect = 5.6e-132
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0


Query: 1   MGAFQLQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDHAF 60
           MGAFQLQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDHAF
Sbjct: 1   MGAFQLQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDHAF 60

Query: 61  SDSEPINTPPQRRFPPDHREARRVPRGGVTASYDNRNQRFNRHSEGSSSRFTNEGSTSPQ 120
           SDSEPINTPPQRRFPPDHREARRVPRGGVTASYDNRNQRFNRHSEGSSSRFTNEGSTSPQ
Sbjct: 61  SDSEPINTPPQRRFPPDHREARRVPRGGVTASYDNRNQRFNRHSEGSSSRFTNEGSTSPQ 120

Query: 121 RSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRPPEADEI 180
           RSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRPPEADEI
Sbjct: 121 RSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRPPEADEI 180

Query: 181 FGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTXXXXXXXXXXX 240
           FGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTXXXXXXXXXXX
Sbjct: 181 FGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXFLIDEKALREVLNKRAPFSPDIWKVFFGNRKPPFF 360
           XXXXXXXXXXXXXXXXXXXXXXXXXFLIDEKALREVLNKRAPFSPDIWKVFFGNRKPPFF
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXFLIDEKALREVLNKRAPFSPDIWKVFFGNRKPPFF 360

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BLAST of CsaV3_7G002250 vs. NCBI nr
Match: XP_008462006.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis melo] >XP_008462007.1 PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis melo])

HSP 1 Score: 377.1 bits (967), Expect = 6.7e-101
Identity = 307/360 (85.28%), Postives = 313/360 (86.94%), Query Frame = 0


Query: 1   MGAFQLQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDHAF 60
           M AFQ QSRLQVSKILSS+IRKWEIDFPLLHNPLRTPDFSL PA SRRF+SNSMDDD AF
Sbjct: 1   MAAFQFQSRLQVSKILSSSIRKWEIDFPLLHNPLRTPDFSLSPAPSRRFSSNSMDDDRAF 60

Query: 61  SDSEPINTPPQRRFPPDHREARRVPRGGVTASYDNRNQRFNRHSEGSSSRFTNEGSTSPQ 120
           S+SEP NTPPQRRFPPDHREARRVPRGGVT SYDNRNQRFNRHSEGSSSRFTNEGSTS Q
Sbjct: 61  SESEPRNTPPQRRFPPDHREARRVPRGGVTDSYDNRNQRFNRHSEGSSSRFTNEGSTSRQ 120

Query: 121 RSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRPPEADEI 180
           RSESLSQKDFSFLEKFKLNTDNQS                         + QRPP ADEI
Sbjct: 121 RSESLSQKDFSFLEKFKLNTDNQSXXXXXXXXXXXXXXXXXXXXXXXXXQHQRPPAADEI 180

Query: 181 FGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTXXXXXXXXXXX 240
           F KMKE+GLIPNAVAMLDGLCKDGLIQEAMKLF LIREKGTIPEVVIY XXXXXXXXXXX
Sbjct: 181 FRKMKESGLIPNAVAMLDGLCKDGLIQEAMKLFALIREKGTIPEVVIYXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXFLIDEKALREVLNKRAPFSPDIWKVFFGNRKPPFF 360
           XXXXXXXXXXXXXXXXXX       FLIDEKALRE LNKRAPFSPDIWKVFFGN+K PFF
Sbjct: 301 XXXXXXXXXXXXXXXXXXETFKQKGFLIDEKALREFLNKRAPFSPDIWKVFFGNKKAPFF 360

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BLAST of CsaV3_7G002250 vs. NCBI nr
Match: XP_023554525.1 (pentatricopeptide repeat-containing protein At4g38150-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554526.1 pentatricopeptide repeat-containing protein At4g38150-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.4 bits (838), Expect = 6.1e-86
Identity = 292/366 (79.78%), Postives = 311/366 (84.97%), Query Frame = 0


Query: 1   MGA--FQLQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDH 60
           MGA   QLQSRL+VSKILSSTIR WE  FPLLH+PLRTPD SL P +SR F+SNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSDSEPINTPPQRRFPPDHREARRVPR--GGVTASY--DNRNQRFNRHSEGSSSRFTNE 120
            FS SEP ++PPQRR PPD REARRVP+  G  +A Y  DNRNQRFNRHSEGSSSRF NE
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEGSAPYPEDNRNQRFNRHSEGSSSRFANE 120

Query: 121 GSTSPQRSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRP 180
           G  S +R+ESLSQKDFSFLEKFKLNTDNQS+  EK E  SSSA  SESM + +QS+PQ P
Sbjct: 121 GPMSRRRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEP-SSSAQFSESM-QGEQSQPQCP 180

Query: 181 PEADEIFGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTXXXXX 240
           PEADEIF KMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVV+Y XXXXX
Sbjct: 181 PEADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLIDEKALREVLNKRAPFSPDIWKVFFGN 360
           XXXXXXXXXXXXXXXXXXXXXX         FLI+EKALRE LNKRAPFSP IW++ FG 
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXVIETLKQKGFLINEKALREFLNKRAPFSPHIWELIFGK 360

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BLAST of CsaV3_7G002250 vs. NCBI nr
Match: XP_022952706.1 (pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita moschata] >XP_022952707.1 pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita moschata])

HSP 1 Score: 325.9 bits (834), Expect = 1.8e-85
Identity = 292/366 (79.78%), Postives = 313/366 (85.52%), Query Frame = 0


Query: 1   MGA--FQLQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDH 60
           MGA   QLQSRL+VSKILSSTIR WE  FPLLH+PLRTPD SL P +SR F+SNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSDSEPINTPPQRRFPPDHREARRVPR--GGVTASY--DNRNQRFNRHSEGSSSRFTNE 120
            FS SEP ++PPQRR PPD REARRVP+  G V+A Y  DNRNQRFNRHSEGSSSRF N+
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFAND 120

Query: 121 GSTSPQRSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRP 180
           G  S  R+ESLSQKDFSFLEKFKLNTDNQS+  EK E  SSSA +SESM + +QS+PQ P
Sbjct: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEP-SSSAQISESM-QGKQSQPQCP 180

Query: 181 PEADEIFGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTXXXXX 240
           PEADEIF KMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVV+Y XXXXX
Sbjct: 181 PEADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLIDEKALREVLNKRAPFSPDIWKVFFGN 360
           XXXXXXXXXXXXXXXXXXXXXXXX       FLI+EK LR+ LNKRAPFSP IW++ FG 
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXETLKQKGFLINEKDLRDFLNKRAPFSPHIWELIFGK 360

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BLAST of CsaV3_7G002250 vs. NCBI nr
Match: XP_022969144.1 (pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita maxima] >XP_022969146.1 pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita maxima])

HSP 1 Score: 323.9 bits (829), Expect = 6.7e-85
Identity = 292/366 (79.78%), Postives = 310/366 (84.70%), Query Frame = 0


Query: 1   MGA--FQLQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDH 60
           MGA   QLQSRL+VSKIL STIR WE  FPLLH+PLRTPD SL P +SR F+SNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILFSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSDSEPINTPPQRRFPPDHREARRVPR--GGVTASY--DNRNQRFNRHSEGSSSRFTNE 120
            FS SEP ++PPQRR PPD REARRVP+  G V+A Y  DNRNQRFNRH EGS SRF NE
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHWEGSESRFANE 120

Query: 121 GSTSPQRSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRP 180
           G  S +RSESLSQKDFSFLEKFKLNTDN S+  EKTE  SSSA  SESM + +QS+PQ P
Sbjct: 121 GPMSRRRSESLSQKDFSFLEKFKLNTDNLSTSTEKTEP-SSSAQFSESM-QGKQSQPQCP 180

Query: 181 PEADEIFGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTXXXXX 240
           PEADEIF KMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVV+Y XXXXX
Sbjct: 181 PEADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLIDEKALREVLNKRAPFSPDIWKVFFGN 360
           XXXXXXXXXXXXXXXXXXXXXXX        FLI+EKALRE LNKRAPFSP IW++ FG 
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXIETLKQKGFLINEKALREFLNKRAPFSPHIWELIFGK 360

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BLAST of CsaV3_7G002250 vs. TAIR10
Match: AT4G38150.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 5.8e-22
Identity = 68/130 (52.31%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 101 NRHSEGSSSRFTNEGSTSPQRSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVS 160
           N H E  + +  N G +    S      D  FLE+FKL  +  S    K E+        
Sbjct: 61  NSHREPPARQAHNLGKSDTTLS------DDGFLEQFKLGVNQDSRETPKPEQ-------- 120

Query: 161 ESMLEKQQSEPQRPPE-ADEIFGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREK 220
                    EP  PPE +DEIF KMKE GLIPNAVAMLDGLCKDGL+QEAMKLFGL+R+K
Sbjct: 121 ------YPQEPLPPPEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQEAMKLFGLMRDK 170

Query: 221 GTIPEVVIYT 230
           GTIPEVVIYT
Sbjct: 181 GTIPEVVIYT 170

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BLAST of CsaV3_7G002250 vs. Swiss-Prot
Match: sp|Q9SZL5|PP356_ARATH (Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana OX=3702 GN=At4g38150 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-20
Identity = 68/130 (52.31%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 101 NRHSEGSSSRFTNEGSTSPQRSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVS 160
           N H E  + +  N G +    S      D  FLE+FKL  +  S    K E+        
Sbjct: 61  NSHREPPARQAHNLGKSDTTLS------DDGFLEQFKLGVNQDSRETPKPEQ-------- 120

Query: 161 ESMLEKQQSEPQRPPE-ADEIFGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREK 220
                    EP  PPE +DEIF KMKE GLIPNAVAMLDGLCKDGL+QEAMKLFGL+R+K
Sbjct: 121 ------YPQEPLPPPEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQEAMKLFGLMRDK 170

Query: 221 GTIPEVVIYT 230
           GTIPEVVIYT
Sbjct: 181 GTIPEVVIYT 170

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BLAST of CsaV3_7G002250 vs. TrEMBL
Match: tr|A0A0A0K6C0|A0A0A0K6C0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G029950 PE=4 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 3.7e-132
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0


Query: 1   MGAFQLQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDHAF 60
           MGAFQLQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDHAF
Sbjct: 1   MGAFQLQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDHAF 60

Query: 61  SDSEPINTPPQRRFPPDHREARRVPRGGVTASYDNRNQRFNRHSEGSSSRFTNEGSTSPQ 120
           SDSEPINTPPQRRFPPDHREARRVPRGGVTASYDNRNQRFNRHSEGSSSRFTNEGSTSPQ
Sbjct: 61  SDSEPINTPPQRRFPPDHREARRVPRGGVTASYDNRNQRFNRHSEGSSSRFTNEGSTSPQ 120

Query: 121 RSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRPPEADEI 180
           RSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRPPEADEI
Sbjct: 121 RSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRPPEADEI 180

Query: 181 FGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTXXXXXXXXXXX 240
           FGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTXXXXXXXXXXX
Sbjct: 181 FGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXFLIDEKALREVLNKRAPFSPDIWKVFFGNRKPPFF 360
           XXXXXXXXXXXXXXXXXXXXXXXXXFLIDEKALREVLNKRAPFSPDIWKVFFGNRKPPFF
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXFLIDEKALREVLNKRAPFSPDIWKVFFGNRKPPFF 360

[Close]

BLAST of CsaV3_7G002250 vs. TrEMBL
Match: tr|A0A1S3CFW0|A0A1S3CFW0_CUCME (pentatricopeptide repeat-containing protein At4g38150 OS=Cucumis melo OX=3656 GN=LOC103500481 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.4e-101
Identity = 307/360 (85.28%), Postives = 313/360 (86.94%), Query Frame = 0


Query: 1   MGAFQLQSRLQVSKILSSTIRKWEIDFPLLHNPLRTPDFSLYPAQSRRFASNSMDDDHAF 60
           M AFQ QSRLQVSKILSS+IRKWEIDFPLLHNPLRTPDFSL PA SRRF+SNSMDDD AF
Sbjct: 1   MAAFQFQSRLQVSKILSSSIRKWEIDFPLLHNPLRTPDFSLSPAPSRRFSSNSMDDDRAF 60

Query: 61  SDSEPINTPPQRRFPPDHREARRVPRGGVTASYDNRNQRFNRHSEGSSSRFTNEGSTSPQ 120
           S+SEP NTPPQRRFPPDHREARRVPRGGVT SYDNRNQRFNRHSEGSSSRFTNEGSTS Q
Sbjct: 61  SESEPRNTPPQRRFPPDHREARRVPRGGVTDSYDNRNQRFNRHSEGSSSRFTNEGSTSRQ 120

Query: 121 RSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRPPEADEI 180
           RSESLSQKDFSFLEKFKLNTDNQS                         + QRPP ADEI
Sbjct: 121 RSESLSQKDFSFLEKFKLNTDNQSXXXXXXXXXXXXXXXXXXXXXXXXXQHQRPPAADEI 180

Query: 181 FGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTXXXXXXXXXXX 240
           F KMKE+GLIPNAVAMLDGLCKDGLIQEAMKLF LIREKGTIPEVVIY XXXXXXXXXXX
Sbjct: 181 FRKMKESGLIPNAVAMLDGLCKDGLIQEAMKLFALIREKGTIPEVVIYXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXFLIDEKALREVLNKRAPFSPDIWKVFFGNRKPPFF 360
           XXXXXXXXXXXXXXXXXX       FLIDEKALRE LNKRAPFSPDIWKVFFGN+K PFF
Sbjct: 301 XXXXXXXXXXXXXXXXXXETFKQKGFLIDEKALREFLNKRAPFSPDIWKVFFGNKKAPFF 360

[Close]

BLAST of CsaV3_7G002250 vs. TrEMBL
Match: tr|A0A2P5SNR5|A0A2P5SNR5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD02344 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.6e-24
Identity = 198/317 (62.46%), Postives = 225/317 (70.98%), Query Frame = 0


Query: 43  PAQSRRFASNSMDDDHAFSDSEPINTPP---QRRFPPDHREARRVPRGGVTASYDNRNQR 102
           P        ++ DDD A   +E I+  P   +R F P  RE          AS+D     
Sbjct: 46  PITENESIRSNEDDDGA---TEHISKRPLRGRRPFNPSFRETE-------GASFDRNRSS 105

Query: 103 FNRHSEGSSSRFTNEGSTSPQRSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPV 162
           F    +  +++F ++    P +    SQ D +FLEKFKL  +N      K E   S    
Sbjct: 106 F----QSPNAKFASD----PTKKREDSQSDVNFLEKFKLGLEN------KRERVPSE--- 165

Query: 163 SESMLEKQQSEPQRPPE-ADEIFGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIRE 222
           SE+M  K+  E   PPE ADEIF KMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGL+RE
Sbjct: 166 SEAMHRKEHEEKLSPPEDADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMRE 225

Query: 223 KGTIPEVVIYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 282
           KGTIPEVVIY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 226 KGTIPEVVIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 285

Query: 283 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLIDEKALREVLN 342
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     FL+++KA+R+ L+
Sbjct: 286 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKQKGFLVNDKAVRQFLD 335

Query: 343 KRAPFSPDIWKVFFGNR 356
           KRAPFSP +W+  FG +
Sbjct: 346 KRAPFSPLVWEAIFGKK 335

[Close]

BLAST of CsaV3_7G002250 vs. TrEMBL
Match: tr|A0A1S3VLM9|A0A1S3VLM9_VIGRR (pentatricopeptide repeat-containing protein At4g38150 isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106776356 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 181/301 (60.13%), Postives = 211/301 (70.10%), Query Frame = 0


Query: 64  EPINTPPQR-------RFPPDHREARRVPRGGVTASYDNRNQRFNRHSEGSSSRFTNEGS 123
           +PIN PP R        FPP   ++      G   + DN N       + S      +G+
Sbjct: 103 KPINQPPPRFRESGRGSFPPRFDDSH-----GAPGALDNSN-------KSSKIDLAFQGT 162

Query: 124 TSPQRSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRPPE 183
              + +  L Q   SFL+KFKL  D+++  + +   ++ S     S    +  EP  P +
Sbjct: 163 NVAETNRDLGQSGDSFLDKFKLAFDDKTVNQSEVAASTQSEEAKWSDSNPKAQEPV-PQD 222

Query: 184 ADEIFGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTXXXXXXX 243
           ADEIF KMKETGLIPNAVAMLDGLCKDGL+QEA+KLFGL+REKGTIPE+VIYTXXXXXXX
Sbjct: 223 ADEIFKKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGLMREKGTIPEIVIYTXXXXXXX 282

Query: 244 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 303
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 283 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 342

Query: 304 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLIDEKALREVLNKRAPFSPDIWKVFFGNRK 358
           XXXXXXXXXXXXXXXXXXXX         F  DEKA+R+ L+K+ PFSP +W+  FG + 
Sbjct: 343 XXXXXXXXXXXXXXXXXXXXAIKTLTKKGFAFDEKAVRQFLDKKTPFSPSVWEAIFGKKA 390

[Close]

BLAST of CsaV3_7G002250 vs. TrEMBL
Match: tr|A0A1S3VMG9|A0A1S3VMG9_VIGRR (pentatricopeptide repeat-containing protein At4g38150 isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106776356 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 181/301 (60.13%), Postives = 211/301 (70.10%), Query Frame = 0


Query: 64  EPINTPPQR-------RFPPDHREARRVPRGGVTASYDNRNQRFNRHSEGSSSRFTNEGS 123
           +PIN PP R        FPP   ++      G   + DN N       + S      +G+
Sbjct: 100 KPINQPPPRFRESGRGSFPPRFDDSH-----GAPGALDNSN-------KSSKIDLAFQGT 159

Query: 124 TSPQRSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRPPE 183
              + +  L Q   SFL+KFKL  D+++  + +   ++ S     S    +  EP  P +
Sbjct: 160 NVAETNRDLGQSGDSFLDKFKLAFDDKTVNQSEVAASTQSEEAKWSDSNPKAQEPV-PQD 219

Query: 184 ADEIFGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTXXXXXXX 243
           ADEIF KMKETGLIPNAVAMLDGLCKDGL+QEA+KLFGL+REKGTIPE+VIYTXXXXXXX
Sbjct: 220 ADEIFKKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGLMREKGTIPEIVIYTXXXXXXX 279

Query: 244 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 303
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 280 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 339

Query: 304 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLIDEKALREVLNKRAPFSPDIWKVFFGNRK 358
           XXXXXXXXXXXXXXXXXXXX         F  DEKA+R+ L+K+ PFSP +W+  FG + 
Sbjct: 340 XXXXXXXXXXXXXXXXXXXXAIKTLTKKGFAFDEKAVRQFLDKKTPFSPSVWEAIFGKKA 387

The following BLAST results are available for this feature:

BLAST of CsaV3_7G002250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144563.1	5.6e-132	100.00	PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis sativu...	[more]
XP_008462006.1	6.7e-101	85.28	PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis melo] ...	[more]
XP_023554525.1	6.1e-86	79.78	pentatricopeptide repeat-containing protein At4g38150-like isoform X1 [Cucurbita...	[more]
XP_022952706.1	1.8e-85	79.78	pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita moschata] ...	[more]
XP_022969144.1	6.7e-85	79.78	pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita maxima] >X...	[more]

BLAST of CsaV3_7G002250 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38150.1	5.8e-22	52.31	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of CsaV3_7G002250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SZL5\|PP356_ARATH	1.0e-20	52.31	Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsaV3_7G002250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K6C0\|A0A0A0K6C0_CUCSA	3.7e-132	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G029950 PE=4 SV=1	[more]
tr\|A0A1S3CFW0\|A0A1S3CFW0_CUCME	4.4e-101	85.28	pentatricopeptide repeat-containing protein At4g38150 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A2P5SNR5\|A0A2P5SNR5_GOSBA	2.6e-24	62.46	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD02344 PE=4 SV...	[more]
tr\|A0A1S3VLM9\|A0A1S3VLM9_VIGRR	4.4e-24	60.13	pentatricopeptide repeat-containing protein At4g38150 isoform X1 OS=Vigna radiat...	[more]
tr\|A0A1S3VMG9\|A0A1S3VMG9_VIGRR	4.4e-24	60.13	pentatricopeptide repeat-containing protein At4g38150 isoform X2 OS=Vigna radiat...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0030117	membrane coat
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0008565	protein transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G002250.1	CsaV3_7G002250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 223..272 e-value: 1.2E-15 score: 57.3
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 195..220 e-value: 5.5E-5 score: 23.1 coord: 297..326 e-value: 0.41 score: 10.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 195..223 e-value: 7.7E-5 score: 20.6 coord: 226..260 e-value: 1.9E-10 score: 38.2 coord: 262..294 e-value: 2.4E-5 score: 22.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 189..223 score: 8.583
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 259..293 score: 10.556
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 224..258 score: 13.11
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 294..328 score: 8.649
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 148..340 e-value: 2.4E-37 score: 130.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..129
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 96..357
None	No IPR available	PANTHER	PTHR24015:SF337	SUBFAMILY NOT NAMED	coord: 96..357

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G002250	CSPI07G02380	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G002250	Cucsa.100010	Cucumber (Gy14) v1	cgycucB116
CsaV3_7G002250	CmaCh19G008270	Cucurbita maxima (Rimu)	cmacucB0638
CsaV3_7G002250	CmaCh11G012950	Cucurbita maxima (Rimu)	cmacucB0173
CsaV3_7G002250	CmoCh19G008440	Cucurbita moschata (Rifu)	cmocucB0622
CsaV3_7G002250	Cp4.1LG15g06670	Cucurbita pepo (Zucchini)	cpecucB0322
CsaV3_7G002250	Cp4.1LG04g04250	Cucurbita pepo (Zucchini)	cpecucB0870
CsaV3_7G002250	CsGy7G002090	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G002250	Carg04123	Silver-seed gourd	carcucB0232
CsaV3_7G002250	Cla015717	Watermelon (97103) v1	cucwmB634
CsaV3_7G002250	MELO3C024165	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G002250	ClCG02G003160	Watermelon (Charleston Gray)	cucwcgB571
CsaV3_7G002250	Lsi11G013190	Bottle gourd (USVL1VR-Ls)	cuclsiB529
CsaV3_7G002250	MELO3C024165.2	Melon (DHL92) v3.6.1	cucmedB536
CsaV3_7G002250	Cla97C02G029680	Watermelon (97103) v2	cucwmbB549
CsaV3_7G002250	Bhi05G001326	Wax gourd	cucwgoB695

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G002250	Cucumber (Chinese Long) v3	cuccucB214
CsaV3_7G002250	Silver-seed gourd	carcucB0386
CsaV3_7G002250	Silver-seed gourd	carcucB1113
CsaV3_7G002250	Silver-seed gourd	carcucB1114
CsaV3_7G002250	Cucumber (Gy14) v2	cgybcucB306
CsaV3_7G002250	Cucumber (Gy14) v1	cgycucB160
CsaV3_7G002250	Cucurbita maxima (Rimu)	cmacucB0176
CsaV3_7G002250	Cucurbita maxima (Rimu)	cmacucB0687
CsaV3_7G002250	Cucurbita maxima (Rimu)	cmacucB0766
CsaV3_7G002250	Cucurbita moschata (Rifu)	cmocucB0155
CsaV3_7G002250	Cucurbita moschata (Rifu)	cmocucB0162
CsaV3_7G002250	Cucurbita moschata (Rifu)	cmocucB0671
CsaV3_7G002250	Cucurbita pepo (Zucchini)	cpecucB0367
CsaV3_7G002250	Cucurbita pepo (Zucchini)	cpecucB0863
CsaV3_7G002250	Wild cucumber (PI 183967)	cpicucB375
CsaV3_7G002250	Bottle gourd (USVL1VR-Ls)	cuclsiB521
CsaV3_7G002250	Melon (DHL92) v3.5.1	cucmeB534
CsaV3_7G002250	Melon (DHL92) v3.6.1	cucmedB521
CsaV3_7G002250	Watermelon (Charleston Gray)	cucwcgB576
CsaV3_7G002250	Watermelon (97103) v2	cucwmbB554