CmaCh11G012950 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G012950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pentatricopeptide repeat superfamily protein, putative
Location	Cma_Chr11 : 8640643 .. 8641098 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTCCTTGGTTTGATTCGTGAGAAGGGTACAATTCCAGATGTTGTGGTTTACACCGCTGTTGTTGATGGGTTTTGCAAGGCTGAGAAGCTTGAAGAAGCTATTAGGATCTTCAGGAAAATGCAGAGTAATGGCATTTCTCCTAATGCTTTCAGTTTTGGCGTCTTGATACAGGGGCTGTGCAAATGCAAGAAATTAGAGGATGCTGTAGCATTTTGCATTGAGATGTTAGAATCTGGGTACTCACCAAATTTAGCCACTTTTGTTGGCTTAATTGATGAGTTGTGCAAAGAAAGGGGAATGGAGGAAGCTCAGAATGTTATAAAAACCTTGAAACAAAAGGGGTTCTTGATTAATGGGAAGGCTTTAGGGAATTATTTGAATAAACGAGCTCCATTTTCTCCAAGTATCTGGGAAGTGATCTTTGGGAAGAAAACGAAGGAATTCTTCTGA

mRNA sequence

ATGAAACTCCTTGGTTTGATTCGTGAGAAGGGTACAATTCCAGATGTTGTGGTTTACACCGCTGTTGTTGATGGGTTTTGCAAGGCTGAGAAGCTTGAAGAAGCTATTAGGATCTTCAGGAAAATGCAGAGTAATGGCATTTCTCCTAATGCTTTCAGTTTTGGCGTCTTGATACAGGGGCTGTGCAAATGCAAGAAATTAGAGGATGCTGTAGCATTTTGCATTGAGATGTTAGAATCTGGGTACTCACCAAATTTAGCCACTTTTGTTGGCTTAATTGATGAGTTGTGCAAAGAAAGGGGAATGGAGGAAGCTCAGAATGTTATAAAAACCTTGAAACAAAAGGGGTTCTTGATTAATGGGAAGGCTTTAGGGAATTATTTGAATAAACGAGCTCCATTTTCTCCAAGTATCTGGGAAGTGATCTTTGGGAAGAAAACGAAGGAATTCTTCTGA

Coding sequence (CDS)

ATGAAACTCCTTGGTTTGATTCGTGAGAAGGGTACAATTCCAGATGTTGTGGTTTACACCGCTGTTGTTGATGGGTTTTGCAAGGCTGAGAAGCTTGAAGAAGCTATTAGGATCTTCAGGAAAATGCAGAGTAATGGCATTTCTCCTAATGCTTTCAGTTTTGGCGTCTTGATACAGGGGCTGTGCAAATGCAAGAAATTAGAGGATGCTGTAGCATTTTGCATTGAGATGTTAGAATCTGGGTACTCACCAAATTTAGCCACTTTTGTTGGCTTAATTGATGAGTTGTGCAAAGAAAGGGGAATGGAGGAAGCTCAGAATGTTATAAAAACCTTGAAACAAAAGGGGTTCTTGATTAATGGGAAGGCTTTAGGGAATTATTTGAATAAACGAGCTCCATTTTCTCCAAGTATCTGGGAAGTGATCTTTGGGAAGAAAACGAAGGAATTCTTCTGA

Protein sequence

MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQGLCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLINGKALGNYLNKRAPFSPSIWEVIFGKKTKEFF

Homology

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BLAST of CmaCh11G012950 vs. Swiss-Prot
Match: PP356_ARATH (Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.6e-53
Identity = 96/149 (64.43%), Postives = 121/149 (81.21%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           MKL GL+R+KGTIP+VV+YTAVV+ FCKA K+E+A RIFRKMQ+NGI+PNAFS+GVL+QG
Sbjct: 151 MKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQG 210

Query: 61  LCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLIN 120
           L  C  L+DAVAFC EMLESG+SPN+ TFV L+D LC+ +G+E+AQ+ I TL QKGF +N
Sbjct: 211 LYNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKGFAVN 270

Query: 121 GKALGNYLNKRAPFSPSIWEVIFGKKTKE 150
            KA+  +++KRAPF    WE IF KK  E
Sbjct: 271 VKAVKEFMDKRAPFPSLAWEAIFKKKPTE 299

[Close]

BLAST of CmaCh11G012950 vs. Swiss-Prot
Match: PP325_ARATH (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 7.6e-18
Identity = 42/120 (35.00%), Postives = 71/120 (59.17%), Query Frame = 1


Query: 10  KGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQGLCKCKKLED 69
           KG  PDV ++T  ++ FCK  K+EEA+++F KM+  G++PN  +F  +I GL  C + ++
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE 326

Query: 70  AVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLINGKALGNYLN 129
           A  F  +M+E G  P L T+  L+  L + + + +A  V+K + +KGF  N     N ++
Sbjct: 327 AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 386

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BLAST of CmaCh11G012950 vs. Swiss-Prot
Match: PP407_ARATH (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.6e-18
Identity = 46/129 (35.66%), Postives = 76/129 (58.91%), Query Frame = 1


Query: 7   IREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQGLCKCKK 66
           ++EKG  PDVV Y+ V+ GFC++  ++EA+R+ R+M   GI P+  ++  LIQG C+ ++
Sbjct: 441 MKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRR 500

Query: 67  LEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFL---INGKA 126
            ++A     EML  G  P+  T+  LI+  C E  +E+A  +   + +KG L   +    
Sbjct: 501 TKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSV 560

Query: 127 LGNYLNKRA 133
           L N LNK++
Sbjct: 561 LINGLNKQS 569

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BLAST of CmaCh11G012950 vs. Swiss-Prot
Match: PPR28_ARATH (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-17
Identity = 41/116 (35.34%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           MKLL  +R++G  PDVV Y  +V+G CK  +L+EAI+    M S+G  PN  +  ++++ 
Sbjct: 259 MKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRS 318

Query: 61  LCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKG 117
           +C   +  DA     +ML  G+SP++ TF  LI+ LC++  +  A ++++ + Q G
Sbjct: 319 MCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374

[Close]

BLAST of CmaCh11G012950 vs. Swiss-Prot
Match: PP418_ARATH (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-16
Identity = 41/115 (35.65%), Postives = 68/115 (59.13%), Query Frame = 1


Query: 2   KLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQGL 61
           KL   + EK   P VV YT++++G C ++ ++EA+R   +M+S GI PN F++  L+ GL
Sbjct: 213 KLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGL 272

Query: 62  CKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKG 117
           CK  +   A+     M+  G  PN+ T+  LI  LCKE+ ++EA  ++  +  +G
Sbjct: 273 CKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQG 327

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BLAST of CmaCh11G012950 vs. TrEMBL
Match: A0A0A0K6C0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G029950 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.5e-60
Identity = 115/151 (76.16%), Postives = 129/151 (85.43%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           MKL GLIREKGTIP+VV+YTAVVDGFCKAEK +EAIRIFRKMQ NGI PNAFSFGVLIQG
Sbjct: 210 MKLFGLIREKGTIPEVVIYTAVVDGFCKAEKFDEAIRIFRKMQHNGIPPNAFSFGVLIQG 269

Query: 61  LCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLIN 120
           L KCKKL+DAVAFC EMLESG+ PNL TFVGLID LC E+G++EA +V++T KQKGFLI+
Sbjct: 270 LYKCKKLDDAVAFCNEMLESGHLPNLTTFVGLIDALCNEKGVDEAHSVVETFKQKGFLID 329

Query: 121 GKALGNYLNKRAPFSPSIWEVIFGKKTKEFF 152
            KAL   LNKRAPFSP IW+V FG +   FF
Sbjct: 330 EKALREVLNKRAPFSPDIWKVFFGNRKPPFF 360

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BLAST of CmaCh11G012950 vs. TrEMBL
Match: A0A0D2S9H9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G065500 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 8.1e-59
Identity = 108/149 (72.48%), Postives = 130/149 (87.25%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           MKL GL+REKGTIP+VV+YTAVVDGFCKA KLE+A RIFRKMQS G+ PNAFS+ VLIQG
Sbjct: 190 MKLFGLMREKGTIPEVVIYTAVVDGFCKAHKLEDAKRIFRKMQSKGVIPNAFSYTVLIQG 249

Query: 61  LCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLIN 120
           L KCK L+DA+ FC+EM+E+G+SPN+ TFVGL+D LCKE+G+EEA NVI TLKQKGFL+N
Sbjct: 250 LYKCKHLDDAIEFCLEMVEAGHSPNVTTFVGLVDGLCKEKGVEEAVNVIGTLKQKGFLVN 309

Query: 121 GKALGNYLNKRAPFSPSIWEVIFGKKTKE 150
            KA+  +L+KRAPFSP +WE IFGKKT +
Sbjct: 310 DKAVRQFLDKRAPFSPLVWEAIFGKKTSQ 338

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BLAST of CmaCh11G012950 vs. TrEMBL
Match: A0A067FYZ4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047934mg PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.3e-58
Identity = 106/147 (72.11%), Postives = 132/147 (89.80%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           MKL GL+REKGTIP+VV+YTAVVDGFCKA+K ++A RIFRKMQSNGI+PNAFS+ +LIQG
Sbjct: 193 MKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQG 252

Query: 61  LCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLIN 120
           L KC KLE+AV +CIEMLE+G+SPN+ TFVGL+D LC+ERG+E+AQ+VI TLK+KGFL+N
Sbjct: 253 LYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVN 312

Query: 121 GKALGNYLNKRAPFSPSIWEVIFGKKT 148
            KA+  +L+K+APFS S+WE IFGKKT
Sbjct: 313 DKAVREFLDKKAPFSSSVWEAIFGKKT 339

[Close]

BLAST of CmaCh11G012950 vs. TrEMBL
Match: V4S9S2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028759mg PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.1e-58
Identity = 105/149 (70.47%), Postives = 133/149 (89.26%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           MKL GL+REKGTIP+VV+YTAVVDGFCKA+K ++A RIFRKMQSNGI+PNAFS+ +LIQG
Sbjct: 193 MKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQG 252

Query: 61  LCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLIN 120
           L KC KLE+AV +CIEMLE+G+SPN+ TFVGL+D LC+E+G+E+AQ+VI TLK+KGFL+N
Sbjct: 253 LYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCREKGVEKAQSVIATLKEKGFLVN 312

Query: 121 GKALGNYLNKRAPFSPSIWEVIFGKKTKE 150
            KA+  +L+K+APFS S+WE IFGKKT +
Sbjct: 313 DKAVREFLDKKAPFSSSVWEAIFGKKTSQ 341

[Close]

BLAST of CmaCh11G012950 vs. TrEMBL
Match: W9QWG7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013756 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.6e-57
Identity = 102/149 (68.46%), Postives = 130/149 (87.25%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           MKL GL++EKGTIP+VV+YTAVVDGFCKA+KL++A+RIFRKMQSNGI PNAFS+ VL+QG
Sbjct: 155 MKLFGLMKEKGTIPEVVIYTAVVDGFCKAQKLDDAVRIFRKMQSNGIEPNAFSYSVLVQG 214

Query: 61  LCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLIN 120
           LC  K+LED + FC+EMLE+G+SPN+ATFVGL+D LC+E+G+EEAQ VI  L+ KGFL+N
Sbjct: 215 LCGGKRLEDGLEFCVEMLEAGHSPNVATFVGLVDGLCEEKGVEEAQGVIGKLRDKGFLLN 274

Query: 121 GKALGNYLNKRAPFSPSIWEVIFGKKTKE 150
            KA+  +L+K+A FSPS+WE IFGKK  +
Sbjct: 275 EKAVREFLDKKASFSPSVWEAIFGKKASQ 303

[Close]

BLAST of CmaCh11G012950 vs. TAIR10
Match: AT4G38150.1 (AT4G38150.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 208.4 bits (529), Expect = 3.1e-54
Identity = 96/149 (64.43%), Postives = 121/149 (81.21%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           MKL GL+R+KGTIP+VV+YTAVV+ FCKA K+E+A RIFRKMQ+NGI+PNAFS+GVL+QG
Sbjct: 151 MKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQG 210

Query: 61  LCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLIN 120
           L  C  L+DAVAFC EMLESG+SPN+ TFV L+D LC+ +G+E+AQ+ I TL QKGF +N
Sbjct: 211 LYNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKGFAVN 270

Query: 121 GKALGNYLNKRAPFSPSIWEVIFGKKTKE 150
            KA+  +++KRAPF    WE IF KK  E
Sbjct: 271 VKAVKEFMDKRAPFPSLAWEAIFKKKPTE 299

[Close]

BLAST of CmaCh11G012950 vs. TAIR10
Match: AT5G03560.2 (AT5G03560.2 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 5.4e-22
Identity = 49/147 (33.33%), Postives = 92/147 (62.59%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           ++L   I++K  +PDVV +TA+V+ +  A + +E +++F +M ++G+SPNA+++ VLI+G
Sbjct: 217 LELFSQIKDKNRMPDVVAHTAIVEAYANAGQAKETLKVFMRMLASGVSPNAYTYSVLIKG 276

Query: 61  LCKCKKL-EDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLI 120
           L    K  +DA  + +EM+ +G SPN AT+  + +   +E   E A+ +++ +K KGF+ 
Sbjct: 277 LAADGKTHKDAKKYLLEMMGNGMSPNAATYTAVFEAFVREGKEESARELLQEMKGKGFVP 336

Query: 121 NGKALGNYLN-KRAPFSPSIWEVIFGK 146
           + KA+   L  KR     ++  ++F K
Sbjct: 337 DEKAVREALEYKRGQVFRTVINLLFDK 363

[Close]

BLAST of CmaCh11G012950 vs. TAIR10
Match: AT4G19440.1 (AT4G19440.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-19
Identity = 42/120 (35.00%), Postives = 71/120 (59.17%), Query Frame = 1


Query: 10  KGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQGLCKCKKLED 69
           KG  PDV ++T  ++ FCK  K+EEA+++F KM+  G++PN  +F  +I GL  C + ++
Sbjct: 254 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE 313

Query: 70  AVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLINGKALGNYLN 129
           A  F  +M+E G  P L T+  L+  L + + + +A  V+K + +KGF  N     N ++
Sbjct: 314 AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 373

[Close]

BLAST of CmaCh11G012950 vs. TAIR10
Match: AT5G39710.1 (AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-19
Identity = 46/129 (35.66%), Postives = 76/129 (58.91%), Query Frame = 1


Query: 7   IREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQGLCKCKK 66
           ++EKG  PDVV Y+ V+ GFC++  ++EA+R+ R+M   GI P+  ++  LIQG C+ ++
Sbjct: 441 MKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRR 500

Query: 67  LEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFL---INGKA 126
            ++A     EML  G  P+  T+  LI+  C E  +E+A  +   + +KG L   +    
Sbjct: 501 TKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSV 560

Query: 127 LGNYLNKRA 133
           L N LNK++
Sbjct: 561 LINGLNKQS 569

[Close]

BLAST of CmaCh11G012950 vs. TAIR10
Match: AT1G09900.1 (AT1G09900.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 7.3e-19
Identity = 41/116 (35.34%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           MKLL  +R++G  PDVV Y  +V+G CK  +L+EAI+    M S+G  PN  +  ++++ 
Sbjct: 259 MKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRS 318

Query: 61  LCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKG 117
           +C   +  DA     +ML  G+SP++ TF  LI+ LC++  +  A ++++ + Q G
Sbjct: 319 MCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374

[Close]

BLAST of CmaCh11G012950 vs. NCBI nr
Match: gi|659124148|ref|XP_008462006.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis melo])

HSP 1 Score: 242.7 bits (618), Expect = 4.3e-61
Identity = 116/151 (76.82%), Postives = 130/151 (86.09%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           MKL  LIREKGTIP+VV+YTAVVDGFCKAEK +EAIRIFRKMQ+ GISPNAFSFGVLIQG
Sbjct: 210 MKLFALIREKGTIPEVVIYTAVVDGFCKAEKFDEAIRIFRKMQNKGISPNAFSFGVLIQG 269

Query: 61  LCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLIN 120
           L KCKKL+DAVAFC EMLESG+ PNL TFVGLID LC E+G++EA NV++T KQKGFLI+
Sbjct: 270 LYKCKKLDDAVAFCNEMLESGHLPNLTTFVGLIDVLCSEKGVDEAHNVVETFKQKGFLID 329

Query: 121 GKALGNYLNKRAPFSPSIWEVIFGKKTKEFF 152
            KAL  +LNKRAPFSP IW+V FG K   FF
Sbjct: 330 EKALREFLNKRAPFSPDIWKVFFGNKKAPFF 360

[Close]

BLAST of CmaCh11G012950 vs. NCBI nr
Match: gi|449453638|ref|XP_004144563.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 2.1e-60
Identity = 115/151 (76.16%), Postives = 129/151 (85.43%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           MKL GLIREKGTIP+VV+YTAVVDGFCKAEK +EAIRIFRKMQ NGI PNAFSFGVLIQG
Sbjct: 210 MKLFGLIREKGTIPEVVIYTAVVDGFCKAEKFDEAIRIFRKMQHNGIPPNAFSFGVLIQG 269

Query: 61  LCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLIN 120
           L KCKKL+DAVAFC EMLESG+ PNL TFVGLID LC E+G++EA +V++T KQKGFLI+
Sbjct: 270 LYKCKKLDDAVAFCNEMLESGHLPNLTTFVGLIDALCNEKGVDEAHSVVETFKQKGFLID 329

Query: 121 GKALGNYLNKRAPFSPSIWEVIFGKKTKEFF 152
            KAL   LNKRAPFSP IW+V FG +   FF
Sbjct: 330 EKALREVLNKRAPFSPDIWKVFFGNRKPPFF 360

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BLAST of CmaCh11G012950 vs. NCBI nr
Match: gi|823259209|ref|XP_012462310.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g38150 isoform X1 [Gossypium raimondii])

HSP 1 Score: 234.6 bits (597), Expect = 1.2e-58
Identity = 108/149 (72.48%), Postives = 130/149 (87.25%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           MKL GL+REKGTIP+VV+YTAVVDGFCKA KLE+A RIFRKMQS G+ PNAFS+ VLIQG
Sbjct: 190 MKLFGLMREKGTIPEVVIYTAVVDGFCKAHKLEDAKRIFRKMQSKGVIPNAFSYTVLIQG 249

Query: 61  LCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLIN 120
           L KCK L+DA+ FC+EM+E+G+SPN+ TFVGL+D LCKE+G+EEA NVI TLKQKGFL+N
Sbjct: 250 LYKCKHLDDAIEFCLEMVEAGHSPNVTTFVGLVDGLCKEKGVEEAVNVIGTLKQKGFLVN 309

Query: 121 GKALGNYLNKRAPFSPSIWEVIFGKKTKE 150
            KA+  +L+KRAPFSP +WE IFGKKT +
Sbjct: 310 DKAVRQFLDKRAPFSPLVWEAIFGKKTSQ 338

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BLAST of CmaCh11G012950 vs. NCBI nr
Match: gi|641849561|gb|KDO68436.1| (hypothetical protein CISIN_1g047934mg [Citrus sinensis])

HSP 1 Score: 233.0 bits (593), Expect = 3.4e-58
Identity = 106/147 (72.11%), Postives = 132/147 (89.80%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           MKL GL+REKGTIP+VV+YTAVVDGFCKA+K ++A RIFRKMQSNGI+PNAFS+ +LIQG
Sbjct: 193 MKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQG 252

Query: 61  LCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLIN 120
           L KC KLE+AV +CIEMLE+G+SPN+ TFVGL+D LC+ERG+E+AQ+VI TLK+KGFL+N
Sbjct: 253 LYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVN 312

Query: 121 GKALGNYLNKRAPFSPSIWEVIFGKKT 148
            KA+  +L+K+APFS S+WE IFGKKT
Sbjct: 313 DKAVREFLDKKAPFSSSVWEAIFGKKT 339

[Close]

BLAST of CmaCh11G012950 vs. NCBI nr
Match: gi|568866415|ref|XP_006486551.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Citrus sinensis])

HSP 1 Score: 233.0 bits (593), Expect = 3.4e-58
Identity = 106/147 (72.11%), Postives = 132/147 (89.80%), Query Frame = 1


Query: 1   MKLLGLIREKGTIPDVVVYTAVVDGFCKAEKLEEAIRIFRKMQSNGISPNAFSFGVLIQG 60
           MKL GL+REKGTIP+VV+YTAVVDGFCKA+K ++A RIFRKMQSNGI+PNAFS+ +LIQG
Sbjct: 236 MKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQG 295

Query: 61  LCKCKKLEDAVAFCIEMLESGYSPNLATFVGLIDELCKERGMEEAQNVIKTLKQKGFLIN 120
           L KC KLE+AV +CIEMLE+G+SPN+ TFVGL+D LC+ERG+E+AQ+VI TLK+KGFL+N
Sbjct: 296 LYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVN 355

Query: 121 GKALGNYLNKRAPFSPSIWEVIFGKKT 148
            KA+  +L+K+APFS S+WE IFGKKT
Sbjct: 356 DKAVREFLDKKAPFSSSVWEAIFGKKT 382

The following BLAST results are available for this feature:

BLAST of CmaCh11G012950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP356_ARATH	5.6e-53	64.43	Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN...	[more]
PP325_ARATH	7.6e-18	35.00	Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidop...	[more]
PP407_ARATH	7.6e-18	35.66	Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN...	[more]
PPR28_ARATH	1.3e-17	35.34	Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN...	[more]
PP418_ARATH	2.4e-16	35.65	Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN...	[more]

BLAST of CmaCh11G012950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6C0_CUCSA	1.5e-60	76.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G029950 PE=4 SV=1	[more]
A0A0D2S9H9_GOSRA	8.1e-59	72.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G065500 PE=4 SV=1	[more]
A0A067FYZ4_CITSI	2.3e-58	72.11	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047934mg PE=4 SV=1	[more]
V4S9S2_9ROSI	3.1e-58	70.47	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028759mg PE=4 SV=1	[more]
W9QWG7_9ROSA	7.6e-57	68.46	Uncharacterized protein OS=Morus notabilis GN=L484_013756 PE=4 SV=1	[more]

BLAST of CmaCh11G012950 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38150.1	3.1e-54	64.43	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G03560.2	5.4e-22	33.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G19440.1	4.3e-19	35.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G39710.1	4.3e-19	35.66	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G09900.1	7.3e-19	35.34	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

BLAST of CmaCh11G012950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124148\|ref\|XP_008462006.1\|	4.3e-61	76.82	PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis melo]	[more]
gi\|449453638\|ref\|XP_004144563.1\|	2.1e-60	76.16	PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis sativu...	[more]
gi\|823259209\|ref\|XP_012462310.1\|	1.2e-58	72.48	PREDICTED: pentatricopeptide repeat-containing protein At4g38150 isoform X1 [Gos...	[more]
gi\|641849561\|gb\|KDO68436.1\|	3.4e-58	72.11	hypothetical protein CISIN_1g047934mg [Citrus sinensis]	[more]
gi\|568866415\|ref\|XP_006486551.1\|	3.4e-58	72.11	PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Citrus sinensi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0030117	membrane coat
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008565	protein transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G012950.1	CmaCh11G012950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 88..117 score:
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 14..63 score: 3.1
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 53..85 score: 1.3E-6coord: 17..51 score: 1.9
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 15..49 score: 13.822coord: 85..119 score: 8.561coord: 50..84 score: 11
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..129 score: 2.9
None	No IPR available	PANTHER	PTHR24015:SF337	SUBFAMILY NOT NAMED	coord: 1..129 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G012950	Cucsa.100010	Cucumber (Gy14) v1	cgycmaB0214
CmaCh11G012950	Cla015717	Watermelon (97103) v1	cmawmB128
CmaCh11G012950	Csa7G029950	Cucumber (Chinese Long) v2	cmacuB148
CmaCh11G012950	MELO3C024165	Melon (DHL92) v3.5.1	cmameB100
CmaCh11G012950	ClCG02G003160	Watermelon (Charleston Gray)	cmawcgB103
CmaCh11G012950	CSPI07G02380	Wild cucumber (PI 183967)	cmacpiB145
CmaCh11G012950	Cp4.1LG15g06670	Cucurbita pepo (Zucchini)	cmacpeB117
CmaCh11G012950	Cp4.1LG04g04250	Cucurbita pepo (Zucchini)	cmacpeB154
CmaCh11G012950	MELO3C024165.2	Melon (DHL92) v3.6.1	cmamedB108
CmaCh11G012950	CsaV3_7G002250	Cucumber (Chinese Long) v3	cmacucB0173
CmaCh11G012950	Cla97C02G029680	Watermelon (97103) v2	cmawmbB106
CmaCh11G012950	CsGy7G002090	Cucumber (Gy14) v2	cgybcmaB897

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh11G012950	CmaCh19G008270	Cucurbita maxima (Rimu)	cmacmaB150

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G012950	Melon (DHL92) v3.6.1	cmamedB102
CmaCh11G012950	Melon (DHL92) v3.6.1	cmamedB103
CmaCh11G012950	Silver-seed gourd	carcmaB0269
CmaCh11G012950	Silver-seed gourd	carcmaB0272
CmaCh11G012950	Silver-seed gourd	carcmaB0483
CmaCh11G012950	Silver-seed gourd	carcmaB1471
CmaCh11G012950	Cucumber (Chinese Long) v3	cmacucB0176
CmaCh11G012950	Watermelon (97103) v2	cmawmbB101
CmaCh11G012950	Wax gourd	cmawgoB0115
CmaCh11G012950	Wax gourd	cmawgoB0123
CmaCh11G012950	Cucurbita maxima (Rimu)	cmacmaB151
CmaCh11G012950	Cucurbita maxima (Rimu)	cmacmaB155
CmaCh11G012950	Cucumber (Gy14) v1	cgycmaB0215
CmaCh11G012950	Cucumber (Gy14) v1	cgycmaB0294
CmaCh11G012950	Cucurbita moschata (Rifu)	cmacmoB117
CmaCh11G012950	Cucurbita moschata (Rifu)	cmacmoB144
CmaCh11G012950	Cucurbita moschata (Rifu)	cmacmoB145
CmaCh11G012950	Cucurbita moschata (Rifu)	cmacmoB149
CmaCh11G012950	Cucumber (Chinese Long) v2	cmacuB141
CmaCh11G012950	Melon (DHL92) v3.5.1	cmameB094
CmaCh11G012950	Melon (DHL92) v3.5.1	cmameB095
CmaCh11G012950	Watermelon (Charleston Gray)	cmawcgB097
CmaCh11G012950	Watermelon (97103) v1	cmawmB121
CmaCh11G012950	Cucurbita pepo (Zucchini)	cmacpeB118
CmaCh11G012950	Cucurbita pepo (Zucchini)	cmacpeB123
CmaCh11G012950	Bottle gourd (USVL1VR-Ls)	cmalsiB090
CmaCh11G012950	Bottle gourd (USVL1VR-Ls)	cmalsiB093
CmaCh11G012950	Bottle gourd (USVL1VR-Ls)	cmalsiB100
CmaCh11G012950	Cucumber (Gy14) v2	cgybcmaB710
CmaCh11G012950	Cucumber (Gy14) v2	cgybcmaB899