Cp4.1LG12g06470 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g06470
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description60S ribosomal protein L44
LocationCp4.1LG12 : 7519593 .. 7520472 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATTCAACTCTTCTGCTAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAATATAAGAAGGGTAAGGACAGCCTTGCTGCTCAAGGGAAACGTCGTTACGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCCGTCTTTCATAAGAAGGTGAAAAATCTCTTTCCATGATCATTGATCTGTTCAACCCAAAACCAGAAGTTGTTTATTTTCCTTGAATAAATAATCATCAGAGCTTTAACTTTCCTTCCAGGCCAAAACTACGAAGAAGATTGTTCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGGTTTGTATTCAAAGCAAATTTCTCATTCATTGGTGTCTCTTGTTGATATCAATCAGCTATATGGTTGGATAGATCTCTTATTTTAGTTGTCCTTGAATATGGTTTTCATTAATGCATACCTTATATTTGTTTGCTATTGCAGAGATGCAAGCATTTTGAGATTGGTGGTGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAGATGCATTAACGTTGTCATTCACCATGTTTTGCTGCCTAGGGAGTCTAAATTGTGGGTTTTTTATTTTTTGTTTTGTTGCTCTGATACTTGGGTACACTTTTACACGTTGAATCTTGTTTAATGTATCATTTGTTTTGCTGTCAAACTAATTTTCATTACATCTCTGGCTGTCTAGTGAATGCTCATTTACTTGTCAAACGAATTTGAGTTTTTCTCGCGCCTTGCTATACTACACGACACGAGTGACGGATGATATTGAAGTAGACAGGGTGTTTGGAAGCACCACCAAAAAA

mRNA sequence

ATGATATTCAACTCTTCTGCTAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAATATAAGAAGGGTAAGGACAGCCTTGCTGCTCAAGGGAAACGTCGTTACGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCCGTCTTTCATAAGAAGGCCAAAACTACGAAGAAGATTGTTCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGTGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAGATGCATTAACGTTGTCATTCACCATGTTTTGCTGCCTAGGGAGTCTAAATTGTGGGTTTTTTATTTTTTGTTTTGTTGCTCTGATACTTGGGTACACTTTTACACGTTGAATCTTGTTTAATGTATCATTTGTTTTGCTGTCAAACTAATTTTCATTACATCTCTGGCTGTCTAGTGAATGCTCATTTACTTGTCAAACGAATTTGAGTTTTTCTCGCGCCTTGCTATACTACACGACACGAGTGACGGATGATATTGAAGTAGACAGGGTGTTTGGAAGCACCACCAAAAAA

Coding sequence (CDS)

ATGATATTCAACTCTTCTGCTAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAATATAAGAAGGGTAAGGACAGCCTTGCTGCTCAAGGGAAACGTCGTTACGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCCGTCTTTCATAAGAAGGCCAAAACTACGAAGAAGATTGTTCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGTGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG

Protein sequence

MIFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Homology
[Close]
BLAST of Cp4.1LG12g06470 vs. Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 211.1 bits (536), Expect = 6.4e-54
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 1 

Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           AKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Cp4.1LG12g06470 vs. Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 201.4 bits (511), Expect = 5.1e-51
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 1 

Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           AKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Cp4.1LG12g06470 vs. Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.2 bits (435), Expect = 3.3e-42
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 1 

Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 113
           AKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 62  AKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]
BLAST of Cp4.1LG12g06470 vs. Swiss-Prot
Match: RL44_CRYNJ (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RPL44 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 9.6e-42
Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = 1 

Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VN+PKT++TYCK K C+KHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 113
           AKTTKK+VLRL+C  CK   Q A+KRCKHFE+GGDKK +G ++
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]
BLAST of Cp4.1LG12g06470 vs. Swiss-Prot
Match: RL44_CRYNB (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RPL44 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 9.6e-42
Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = 1 

Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VN+PKT++TYCK K C+KHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 113
           AKTTKK+VLRL+C  CK   Q A+KRCKHFE+GGDKK +G ++
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]
BLAST of Cp4.1LG12g06470 vs. TrEMBL
Match: A0A068V1D2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041145001 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.0e-53
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 1 

Query: 2   IFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 61
           + +  +K VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ
Sbjct: 57  VLSPPSKMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 116

Query: 62  TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           TKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 117 TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 168

[Close]
BLAST of Cp4.1LG12g06470 vs. TrEMBL
Match: A0A061E456_THECC (Zinc-binding ribosomal family protein OS=Theobroma cacao GN=TCM_007734 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-52
Identity = 104/110 (94.55%), Postives = 107/110 (97.27%), Query Frame = 1 

Query: 4   NSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 63
           +SSA  VNVPKTKKTYCKSK+C+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 61  SSSAAMVNVPKTKKTYCKSKDCRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 120

Query: 64  PVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           PVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 121 PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 170

[Close]
BLAST of Cp4.1LG12g06470 vs. TrEMBL
Match: G7L0P4_MEDTR (60S ribosomal protein L36a OS=Medicago truncatula GN=MTR_2g008180 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-52
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Cp4.1LG12g06470 vs. TrEMBL
Match: I3S6Y0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-52
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Cp4.1LG12g06470 vs. TrEMBL
Match: F6HF50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02090 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.5e-52
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 1 

Query: 9   QVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 68
           QVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 20  QVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 79

Query: 69  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           KAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 80  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 124

[Close]
BLAST of Cp4.1LG12g06470 vs. TAIR10
Match: AT3G23390.1 (AT3G23390.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 201.4 bits (511), Expect = 2.9e-52
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 1 

Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           AKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Cp4.1LG12g06470 vs. TAIR10
Match: AT4G14320.2 (AT4G14320.2 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 176.8 bits (447), Expect = 7.6e-45
Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI 102
           AKTTKKIVLRLQCQ CKH SQ  IKRCKHFEI
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

[Close]
BLAST of Cp4.1LG12g06470 vs. NCBI nr
Match: gi|661881757|emb|CDP14595.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 214.9 bits (546), Expect = 7.1e-53
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 1 

Query: 2   IFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 61
           + +  +K VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ
Sbjct: 57  VLSPPSKMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 116

Query: 62  TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           TKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 117 TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 168

[Close]
BLAST of Cp4.1LG12g06470 vs. NCBI nr
Match: gi|590689679|ref|XP_007043295.1| (Zinc-binding ribosomal family protein [Theobroma cacao])

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-52
Identity = 104/110 (94.55%), Postives = 107/110 (97.27%), Query Frame = 1 

Query: 4   NSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 63
           +SSA  VNVPKTKKTYCKSK+C+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 61  SSSAAMVNVPKTKKTYCKSKDCRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 120

Query: 64  PVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           PVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 121 PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 170

[Close]
BLAST of Cp4.1LG12g06470 vs. NCBI nr
Match: gi|823159976|ref|XP_012479828.1| (PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii])

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-52
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = 1 

Query: 5   SSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 64
           S+A  VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 29  SAAAMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 88

Query: 65  VFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           VFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 89  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137

[Close]
BLAST of Cp4.1LG12g06470 vs. NCBI nr
Match: gi|357445721|ref|XP_003593138.1| (60S ribosomal protein L36a [Medicago truncatula])

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-52
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Cp4.1LG12g06470 vs. NCBI nr
Match: gi|297737944|emb|CBI27145.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 212.6 bits (540), Expect = 3.5e-52
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 1 

Query: 9   QVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 68
           QVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 5   QVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 64

Query: 69  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           KAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 65  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 109

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g06470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL44_GOSHI6.4e-5498.0860S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3[more]
RL36A_ARATH5.1e-5193.2760S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3[more]
RL44_PHARH3.3e-4278.6460S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3[more]
RL44_CRYNJ9.6e-4277.6760S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ... [more]
RL44_CRYNB9.6e-4277.6760S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ... [more]
BLAST of Cp4.1LG12g06470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A068V1D2_COFCA5.0e-5392.86Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041145001 PE=3 SV=1[more]
A0A061E456_THECC1.1e-5294.55Zinc-binding ribosomal family protein OS=Theobroma cacao GN=TCM_007734 PE=3 SV=1[more]
G7L0P4_MEDTR1.4e-5299.0460S ribosomal protein L36a OS=Medicago truncatula GN=MTR_2g008180 PE=2 SV=1[more]
I3S6Y0_LOTJA1.4e-5299.04Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
F6HF50_VITVI2.5e-5298.10Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02090 PE=3 SV=... [more]
BLAST of Cp4.1LG12g06470 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23390.12.9e-5293.27 Zinc-binding ribosomal protein family protein[more]
AT4G14320.27.6e-4592.39 Zinc-binding ribosomal protein family protein[more]
BLAST of Cp4.1LG12g06470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|661881757|emb|CDP14595.1|7.1e-5392.86unnamed protein product [Coffea canephora][more]
gi|590689679|ref|XP_007043295.1|1.6e-5294.55Zinc-binding ribosomal family protein [Theobroma cacao][more]
gi|823159976|ref|XP_012479828.1|2.1e-5295.41PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii][more]
gi|357445721|ref|XP_003593138.1|2.1e-5299.0460S ribosomal protein L36a [Medicago truncatula][more]
gi|297737944|emb|CBI27145.3|3.5e-5298.10unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR000552Ribosomal_L44e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g06470.1Cp4.1LG12g06470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000552Ribosomal protein L44ePRODOMPD002841coord: 28..101
score: 5.0
IPR000552Ribosomal protein L44eGENE3DG3DSA:3.10.450.80coord: 10..103
score: 3.1
IPR000552Ribosomal protein L44ePANTHERPTHR1036960S RIBOSOMAL PROTEIN L36A/L44coord: 6..113
score: 2.0E
IPR000552Ribosomal protein L44ePFAMPF00935Ribosomal_L44coord: 27..102
score: 4.1
IPR000552Ribosomal protein L44ePROSITEPS01172RIBOSOMAL_L44Ecoord: 71..82
scor
IPR011332Zinc-binding ribosomal proteinunknownSSF57829Zn-binding ribosomal proteinscoord: 10..102
score: 1.14
NoneNo IPR availablePANTHERPTHR10369:SF3IP17351Pcoord: 6..113
score: 2.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g06470Cucsa.128290Cucumber (Gy14) v1cgycpeB0334
Cp4.1LG12g06470CmaCh08G005020Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g06470CmaCh17G009880Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g06470CmaCh01G002500Cucurbita maxima (Rimu)cmacpeB465
Cp4.1LG12g06470CmoCh01G002600Cucurbita moschata (Rifu)cmocpeB425
Cp4.1LG12g06470CmoCh14G009960Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g06470CmoCh17G009580Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g06470CmoCh08G004950Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g06470Cla015200Watermelon (97103) v1cpewmB131
Cp4.1LG12g06470Cla017307Watermelon (97103) v1cpewmB141
Cp4.1LG12g06470Csa7G420750Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g06470MELO3C023594Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g06470MELO3C024020Melon (DHL92) v3.5.1cpemeB133
Cp4.1LG12g06470ClCG10G011990Watermelon (Charleston Gray)cpewcgB134
Cp4.1LG12g06470ClCG09G004520Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g06470CSPI07G18790Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g06470Lsi02G025320Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g06470MELO3C024020.2Melon (DHL92) v3.6.1cpemedB160
Cp4.1LG12g06470MELO3C023594.2Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g06470CsaV3_7G030620Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g06470Bhi09G000604Wax gourdcpewgoB0201
Cp4.1LG12g06470Bhi11G001137Wax gourdcpewgoB0171
Cp4.1LG12g06470CsGy7G017220Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g06470Carg07343Silver-seed gourdcarcpeB1070
Cp4.1LG12g06470Carg11196Silver-seed gourdcarcpeB1143
Cp4.1LG12g06470Carg07079Silver-seed gourdcarcpeB0158
Cp4.1LG12g06470Carg13415Silver-seed gourdcarcpeB0631
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g06470Cp4.1LG17g07830Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g06470Cp4.1LG02g15820Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g06470Cp4.1LG03g04810Cucurbita pepo (Zucchini)cpecpeB185
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g06470Cucumber (Chinese Long) v3cpecucB0158
Cp4.1LG12g06470Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g06470Wild cucumber (PI 183967)cpecpiB138
Cp4.1LG12g06470Cucumber (Chinese Long) v2cpecuB137
Cp4.1LG12g06470Bottle gourd (USVL1VR-Ls)cpelsiB116
Cp4.1LG12g06470Cucumber (Gy14) v2cgybcpeB308