CmaCh01G002500 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G002500
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description60S ribosomal protein L44
LocationCma_Chr01 : 1152795 .. 1155801 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAAGTAAACTGCTGAAGCGATTGGTATCGTTTTGAAAGTTCAGTGTTCTGTGGAGTTTTAGTGGCGGGCACAGATGATGGATTGTTATGGCCTTTGTTTTCTTTTGCGTGCATTTTTTTATAAGAATTGTTCGTACTGTCGATCTGAATTTGTGGTTAAAAGGCGACTGGTTCATCTTTTGTAGTCGAGTGATAGTATTTAACAAATTATGTGACGTGTTACTGAGCATCTGAAGGTGGAGAATTGACGGAGATTGGGTTGTTTCATCATGCACTTTTTTTAAGAAGGATTTTCCTCGAGTTAAACATTGCACATTGAATATATTAATGATTCTGGATCCTTGATTATGAGTTCATGGAATATTCCATAGAAAAAGGATATTAGATCAGTGAGTTCAAATGCAGTAGTGGAGGATCATATTGGTTCGTAATATTTGTTGTCTTATGATGTTTTTAGCTAGTACTGTCGTAGTTTAGAATTTGAATGTGGATACTGTACTGGGAAACAGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGTTAGTTAGTTTTTCTCTCATCCAGTCAATTCTTACTTTCTTCTTTTCCACGAGGCAAGGAAATCAAAATTGAAGTGAAACATGTGAATCTCACAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCATGCTATCAAGGTTAGAATGCAAAGTATTTCATTATTTTCTGTTTATGGGCTCTCACTATTCAGTATCTTGTTAATTTAGTCCACTTGTCCGAACAATTCAAGCATATAGTGGTTTTCAAACTGCATACTTAAGTTACCCCCTTAAAATAAATGCCACTTGACTGCTATACCTGTGAAGGCATCTGGTGCTAGGCTCTGAATGCCCCTTCATCTTTGGGGTAGTATTCTATTCTTCATTTCGGAACACAACATTCGCATTTGGGGTGATATATTTGGTTGGGACTCTGATTTCAATTGCAAAATTTTTTCTTAAAGGTCCAAATGTGGAAAAGAAACTTTCATCGGTTAGCTGAGTATTTTGTCGTTTCCTTGTTTCATTTCTAACTAAATGAATTAATTGGCAAATGCAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCTCTTTTCTAGATCCGTTGTCTGCTCTTAGCTTTTGTGATTTCTTTTTTACAAAATCAATTGTTATCGGAGATTTTACTGCATTACTCTGTTTGGTTCACCAATTAGTTCTAAACGTCGTAACAATACTATTTAGCTCAAGCCATCTTATCTCAATTATCAAATTTCCAAATTTTTTTTGCTTTTCGTTGAGTCTGTCTCGTAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGTGGAAAAAAATAAATTTTTTAGTTGAGTTGTTTCTCAAAGAAACTTGTGTTTGAAGTGTTTTCATAGCATAACCATTTGATTTTTTAGAATAATTATTGTTAGCTTGCATTTAGTTCAGGCAATTATATTCATCCATTGACTTAACAGTGCTTGAAACTCACATAAGAGCCAATGTAGCCAATTGTAATTTTGAACTCACATCTTAACACCTATCCTAAAAGGCTCTACCAATCTCTCTGATTAACAAACACAACGAAAAACTTGAAGAAAAGATAAGCCACCCCGTATCTATAACATATTTGGATCCACTGAGAACCAAATCATGTATATATGAAGCAAAAGCCAATTACCACAATAACGCTAAATCATTAAAGAGTGAAACGAGGTGCAAGTGATTAACACTGCTGAAGAGACACAAAATTAACTCCGATTGTCAAAAAATCATGTTACATTTGAAAGGAAGAACAGAACAATCCAGTTCAAAATCCAAAATATCCATGTTTTGCACTAGTCTTTTCTCAGTAGTATTTGCAGCAATTACACAAAAACGACCATATCGATACACAAATAAATCTTAAAGTCGTCCATTCAGATGTCCCCAAAGGGATGAATCTACTATGCAAAATTGTGCCACAATGGTGTAAGAATCTTATCAAAGCCCTCCAGTGTTCCCCTAAACTATGCAGCACATGACACAATGAATAAAGTTAATGGAGTTCCAATTTCCCGTATCATATAATGGATGCTATTCATATAGCTACGAAAATTTGAACTGTGATGCACCTGCCGCATGATATTGTGTAGAATTGAACTAGAAGAAGCAAACATAATATGGATAAAGTAAAGACATTTGTTGTCGTACGAGCAAAATTTGAAATTCTATTAAATTTCAAGCTTTTCTCTTTGAAATGCTAATAACAATACTGATCCAAACAGCTAAATGGACATTTAGCTAAGAAAAACAATCAATTCCATCACATCTAGGTAGATATGATCAGCTTTTAGAGAATTCTAACAAAAGTCAGTATGGAACTTTGAAATGCCACGCTTTCGCGTCATAATCCTACCTCGCATTCTTAATTTGAACCTTTATCCTTGCCTTGAGTACCAACTGCATCAGTCACCAGAGCTATTGGCCTTTGATCCATTACCTCGTCGATAATGCCAAACTCTTTGGCCTCTTCTGGGGTCATGAAATAATCCCTATCCATATACTCTTTGATAGTATCTACTGGTTGTGACGTATGCTTGGAGTACAGCTCGTTAAGTGCATCCCAAACCCGAACGATCTGTTTCGTGTGAATCGTTATGTCCTTTGCTTGCCCACTGTATCCACCAGAAGGCTGGTGAATCATGATAGTTGCATTAGGAAGCGATCGTCTCTCACCCTTGGCACCAGCAGCTAGAAGAAGAGAAGCCATTGAAGCAGCCTGACCCAAACAGATGGTATTGA

mRNA sequence

ATGGAAAAATACTGTCGTAGTTTAGAATTTGAATGTGGATACTGTACTGGGAAACAGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCATGCTATCAAGGAAGCGATCGTCTCTCACCCTTGGCACCAGCAGCTAGAAGAAGAGAAGCCATTGAAGCAGCCTGACCCAAACAGATGGTATTGA

Coding sequence (CDS)

ATGGAAAAATACTGTCGTAGTTTAGAATTTGAATGTGGATACTGTACTGGGAAACAGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCATGCTATCAAGGAAGCGATCGTCTCTCACCCTTGGCACCAGCAGCTAGAAGAAGAGAAGCCATTGAAGCAGCCTGACCCAAACAGATGGTATTGA

Protein sequence

MEKYCRSLEFECGYCTGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKEAIVSHPWHQQLEEEKPLKQPDPNRWY
Homology
[Close]
BLAST of CmaCh01G002500 vs. Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-41
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1 

Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKKIVLRLQCQGCKHVSQH IK
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHPIK 86

[Close]
BLAST of CmaCh01G002500 vs. Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-38
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 1 

Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKKIVLRLQCQ CKH SQ  IK
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]
BLAST of CmaCh01G002500 vs. Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 141.7 bits (356), Expect = 5.5e-33
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 1 

Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKK+VLRL+C  CK+  Q  +K
Sbjct: 62  AKTTKKVVLRLECSVCKYKMQMTLK 86

[Close]
BLAST of CmaCh01G002500 vs. Swiss-Prot
Match: RL44_CRYNB (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RPL44 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-33
Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 1 

Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VN+PKT++TYCK K C+KHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKK+VLRL+C  CK   Q A+K
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALK 86

[Close]
BLAST of CmaCh01G002500 vs. Swiss-Prot
Match: RL44_CRYNJ (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RPL44 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-33
Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 1 

Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VN+PKT++TYCK K C+KHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKK+VLRL+C  CK   Q A+K
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALK 86

[Close]
BLAST of CmaCh01G002500 vs. TrEMBL
Match: F6HF50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02090 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 8.6e-41
Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = 1 

Query: 15  CTGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 74
           C   QVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 16  CHNSQVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 75

Query: 75  VFHKKAKTTKKIVLRLQCQGCKHVSQHAIK 105
           VFHKKAKTTKKIVLRLQCQGCKHVSQH IK
Sbjct: 76  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIK 105

[Close]
BLAST of CmaCh01G002500 vs. TrEMBL
Match: A0A068V1D2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041145001 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-40
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 18  KQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 77
           K VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 63  KMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 122

Query: 78  KKAKTTKKIVLRLQCQGCKHVSQHAIK 105
           KKAKTTKKIVLRLQCQGCKHVSQH IK
Sbjct: 123 KKAKTTKKIVLRLQCQGCKHVSQHPIK 149

[Close]
BLAST of CmaCh01G002500 vs. TrEMBL
Match: G7L0P4_MEDTR (60S ribosomal protein L36a OS=Medicago truncatula GN=MTR_2g008180 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.3e-40
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKKIVLRLQCQGCKHVSQHAIK
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIK 86

[Close]
BLAST of CmaCh01G002500 vs. TrEMBL
Match: I3S6Y0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.3e-40
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKKIVLRLQCQGCKHVSQHAIK
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIK 86

[Close]
BLAST of CmaCh01G002500 vs. TrEMBL
Match: I1KUF8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G181300 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.6e-40
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIKE 106
           AKTTKKIVLRLQCQGCKHVSQHAIK+
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIKK 87

[Close]
BLAST of CmaCh01G002500 vs. TAIR10
Match: AT3G23390.1 (AT3G23390.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 160.6 bits (405), Expect = 6.5e-40
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 1 

Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKKIVLRLQCQ CKH SQ  IK
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]
BLAST of CmaCh01G002500 vs. TAIR10
Match: AT4G14320.2 (AT4G14320.2 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 160.6 bits (405), Expect = 6.5e-40
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 1 

Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKKIVLRLQCQ CKH SQ  IK
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]
BLAST of CmaCh01G002500 vs. NCBI nr
Match: gi|661881757|emb|CDP14595.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 172.9 bits (437), Expect = 3.6e-40
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 18  KQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 77
           K VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 63  KMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 122

Query: 78  KKAKTTKKIVLRLQCQGCKHVSQHAIK 105
           KKAKTTKKIVLRLQCQGCKHVSQH IK
Sbjct: 123 KKAKTTKKIVLRLQCQGCKHVSQHPIK 149

[Close]
BLAST of CmaCh01G002500 vs. NCBI nr
Match: gi|357445721|ref|XP_003593138.1| (60S ribosomal protein L36a [Medicago truncatula])

HSP 1 Score: 172.6 bits (436), Expect = 4.7e-40
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKKIVLRLQCQGCKHVSQHAIK
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIK 86

[Close]
BLAST of CmaCh01G002500 vs. NCBI nr
Match: gi|297737944|emb|CBI27145.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 172.2 bits (435), Expect = 6.1e-40
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 1 

Query: 19  QVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 78
           QVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 5   QVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 64

Query: 79  KAKTTKKIVLRLQCQGCKHVSQHAIK 105
           KAKTTKKIVLRLQCQGCKHVSQH IK
Sbjct: 65  KAKTTKKIVLRLQCQGCKHVSQHPIK 90

[Close]
BLAST of CmaCh01G002500 vs. NCBI nr
Match: gi|947095349|gb|KRH43934.1| (hypothetical protein GLYMA_08G181300 [Glycine max])

HSP 1 Score: 171.8 bits (434), Expect = 8.0e-40
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIKE 106
           AKTTKKIVLRLQCQGCKHVSQHAIK+
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIKK 87

[Close]
BLAST of CmaCh01G002500 vs. NCBI nr
Match: gi|297736252|emb|CBI24890.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 171.8 bits (434), Expect = 8.0e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 18  KQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 77
           K VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 35  KMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 94

Query: 78  KKAKTTKKIVLRLQCQGCKHVSQHAIK 105
           KKAKTTKKIVLRLQCQGCKHVSQH IK
Sbjct: 95  KKAKTTKKIVLRLQCQGCKHVSQHPIK 121

The following BLAST results are available for this feature:
BLAST of CmaCh01G002500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL44_GOSHI1.5e-4197.6560S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3[more]
RL36A_ARATH1.2e-3891.7660S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3[more]
RL44_PHARH5.5e-3380.0060S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3[more]
RL44_CRYNB7.2e-3380.0060S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ... [more]
RL44_CRYNJ7.2e-3380.0060S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ... [more]
BLAST of CmaCh01G002500 vs. TrEMBL
Match NameE-valueIdentityDescription
F6HF50_VITVI8.6e-4194.44Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02090 PE=3 SV=... [more]
A0A068V1D2_COFCA2.5e-4097.70Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041145001 PE=3 SV=1[more]
G7L0P4_MEDTR3.3e-4098.8260S ribosomal protein L36a OS=Medicago truncatula GN=MTR_2g008180 PE=2 SV=1[more]
I3S6Y0_LOTJA3.3e-4098.82Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
I1KUF8_SOYBN5.6e-4096.51Uncharacterized protein OS=Glycine max GN=GLYMA_08G181300 PE=3 SV=1[more]
BLAST of CmaCh01G002500 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23390.16.5e-4091.76 Zinc-binding ribosomal protein family protein[more]
AT4G14320.26.5e-4091.76 Zinc-binding ribosomal protein family protein[more]
BLAST of CmaCh01G002500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|661881757|emb|CDP14595.1|3.6e-4097.70unnamed protein product [Coffea canephora][more]
gi|357445721|ref|XP_003593138.1|4.7e-4098.8260S ribosomal protein L36a [Medicago truncatula][more]
gi|297737944|emb|CBI27145.3|6.1e-4097.67unnamed protein product [Vitis vinifera][more]
gi|947095349|gb|KRH43934.1|8.0e-4096.51hypothetical protein GLYMA_08G181300 [Glycine max][more]
gi|297736252|emb|CBI24890.3|8.0e-4096.55unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000552Ribosomal_L44e
IPR011332Ribosomal_zn-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G002500.1CmaCh01G002500.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000552Ribosomal protein L44ePRODOMPD002841coord: 38..104
score: 6.0
IPR000552Ribosomal protein L44eGENE3DG3DSA:3.10.450.80coord: 20..104
score: 1.7
IPR000552Ribosomal protein L44ePANTHERPTHR1036960S RIBOSOMAL PROTEIN L36A/L44coord: 18..104
score: 7.9
IPR000552Ribosomal protein L44ePFAMPF00935Ribosomal_L44coord: 37..104
score: 1.1
IPR000552Ribosomal protein L44ePROSITEPS01172RIBOSOMAL_L44Ecoord: 81..92
scor
IPR011332Zinc-binding ribosomal proteinunknownSSF57829Zn-binding ribosomal proteinscoord: 20..104
score: 3.48
NoneNo IPR availablePANTHERPTHR10369:SF3IP17351Pcoord: 18..104
score: 7.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh01G002500Cucsa.128290Cucumber (Gy14) v1cgycmaB0347
CmaCh01G002500Cucsa.192230Cucumber (Gy14) v1cgycmaB0557
CmaCh01G002500Cla017307Watermelon (97103) v1cmawmB416
CmaCh01G002500Cla015200Watermelon (97103) v1cmawmB407
CmaCh01G002500Csa3G653380Cucumber (Chinese Long) v2cmacuB450
CmaCh01G002500Csa7G420750Cucumber (Chinese Long) v2cmacuB496
CmaCh01G002500MELO3C024020Melon (DHL92) v3.5.1cmameB426
CmaCh01G002500MELO3C023594Melon (DHL92) v3.5.1cmameB404
CmaCh01G002500ClCG10G011990Watermelon (Charleston Gray)cmawcgB387
CmaCh01G002500ClCG09G004520Watermelon (Charleston Gray)cmawcgB377
CmaCh01G002500CSPI03G28970Wild cucumber (PI 183967)cmacpiB453
CmaCh01G002500CSPI07G18790Wild cucumber (PI 183967)cmacpiB502
CmaCh01G002500CmoCh17G009580Cucurbita moschata (Rifu)cmacmoB466
CmaCh01G002500CmoCh08G004950Cucurbita moschata (Rifu)cmacmoB490
CmaCh01G002500CmoCh14G009960Cucurbita moschata (Rifu)cmacmoB462
CmaCh01G002500CmoCh01G002600Cucurbita moschata (Rifu)cmacmoB468
CmaCh01G002500Lsi02G025320Bottle gourd (USVL1VR-Ls)cmalsiB418
CmaCh01G002500Cp4.1LG12g06470Cucurbita pepo (Zucchini)cmacpeB465
CmaCh01G002500Cp4.1LG17g07830Cucurbita pepo (Zucchini)cmacpeB472
CmaCh01G002500Cp4.1LG02g15820Cucurbita pepo (Zucchini)cmacpeB491
CmaCh01G002500Cp4.1LG03g04810Cucurbita pepo (Zucchini)cmacpeB494
CmaCh01G002500MELO3C024020.2Melon (DHL92) v3.6.1cmamedB489
CmaCh01G002500MELO3C023594.2Melon (DHL92) v3.6.1cmamedB461
CmaCh01G002500CsaV3_7G030620Cucumber (Chinese Long) v3cmacucB0595
CmaCh01G002500CsaV3_3G031360Cucumber (Chinese Long) v3cmacucB0542
CmaCh01G002500Cla97C10G194800Watermelon (97103) v2cmawmbB445
CmaCh01G002500Cla97C09G166870Watermelon (97103) v2cmawmbB511
CmaCh01G002500Bhi09G000604Wax gourdcmawgoB0610
CmaCh01G002500Bhi11G001137Wax gourdcmawgoB0553
CmaCh01G002500CsGy7G017220Cucumber (Gy14) v2cgybcmaB938
CmaCh01G002500CsGy3G026850Cucumber (Gy14) v2cgybcmaB364
CmaCh01G002500Carg07343Silver-seed gourdcarcmaB1059
CmaCh01G002500Carg13415Silver-seed gourdcarcmaB0626
CmaCh01G002500Carg07079Silver-seed gourdcarcmaB0143
CmaCh01G002500Carg11196Silver-seed gourdcarcmaB1134
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh01G002500CmaCh17G009880Cucurbita maxima (Rimu)cmacmaB360
CmaCh01G002500CmaCh08G005020Cucurbita maxima (Rimu)cmacmaB440
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G002500Cucurbita maxima (Rimu)cmacmaB255
CmaCh01G002500Cucumber (Gy14) v1cgycmaB0559
CmaCh01G002500Wild cucumber (PI 183967)cmacpiB456
CmaCh01G002500Cucumber (Chinese Long) v2cmacuB453
CmaCh01G002500Bottle gourd (USVL1VR-Ls)cmalsiB422
CmaCh01G002500Cucumber (Gy14) v2cgybcmaB366
CmaCh01G002500Cucumber (Chinese Long) v3cmacucB0545