Carg11196 (gene) Silver-seed gourd

Overview
NameCarg11196
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description60S ribosomal protein L44
LocationCucurbita_argyrosperma_scaffold_013 : 519257 .. 521070 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGCCATTAATTAGGGTTTTCGAGCAGGCCTCGTCGACGTCCAGCCGTCATGGTACTCTTCTTCACCTTTGTTTTTCAGTACAATTTTTTTAGCTACTCGTGTAATATCTTGAATTTCTCTGGTTGGTTCTGTACTTCTTCTATTGATTTCCTCTGTGTTCTACATCTCCGATGCCTTGTTTGATTCTGTTTTATTTGTCCGTCTAATAACTCTGTGATTGAAAAAATAAGAAGTTATAGCGATTGTTTGCGTTTTGAAAGTTTAGCTTTGAATGGAGGGGGTGTCACTTAACTTTTGAGGGCGTTGGTATTGAGTGAGATTGGAATGTTTCTTCCTAAATTGCTTAAACGAAGGGATTTTTCAGAAAGGTGAACATTGCACTTGGAGTGAATTATCGATTCTGGATCTTTCATTATAAGATGATCATTGATAATCCCTTCCAAATGAATTTTAAATCACGGAATTGAAATGCAGTGGTGGGTTTGCAGTATTTGTTTCTTTTTTTAACTTTTCAGCTTGTAGCGTTGTAAGTTAAGATTTGATTATGGATATTGTAATGGGAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTCACACAATATAAGAAGGGGAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAACAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGTTGGTTAATTTTCTCACGTCTAGTTAAATTCTTACTTTCTCTTTTTCCGCAATGCCATTGAGATTAGAACTGAAGTGAAATTTATGAATATAAAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGTTGCAAACACGTATCCCAGCACGCTATCAAGGTTAGAATGCGAAGTATTTCATCATTTTTTGTTTATGGCCTCTCTCTACTGAGTATCTTATTAATCTAATGCATTTTCTAAAAAGAAAACATTCAAGCATATAGTCGTCAGCATCATAAGAGGGGGGATACATGGTTTTTGTTTGCCTCTGTCCTCTCTTTATTAAGTAGATGTAGGATGTCTTCTAGGAGATTCCACATCGGTTGGAGTGGAGAACGAAGCATCTTTATAAGGGGGTGGAAACCTCTCTCTAGTAGATGCCTTTTAAAAACCTTAAGGGGAAGCCCGAAAGGGTAAAATCCAAAGAGAATAATATTTGCTAGCGGTGGGCTTAGACGGTTACATCTTCTCTTGGTCCCAAATAGCCAATTCATTCCCATTAAGTAAATATGCTTGTGAGGCCGTTGATTCTAGGCTTCTGAATATCCCTTTACTCTGGTGGTTGATTTGTTTTCTCCATTCCCGTACTCATCATTCCCTCAAAATCAATTGGGTACTGGGTGCTTCAATTTTTATATGATCGTCATGAACTATGTTTGAAGTAATTGTTAGCTATTTTAGAAAATATGTAACCCCAAGTAAGGAAACCCTAATTGTTAGTTGTTATCAGAATTTTGTGCCTTTCCCTCATCACAGTTCTAAATTGTCAAATGCAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAGACCCTTTATCAGTTTTTATCTTTTGTCATTTCTTTTTCGTAAGATCAGTTATGGAGATTTTGCAGCATTACTCTGTTTTGTTAATGAATTAGCTCTACATGTCCTAACGATACTATTTAGCTGAAACTTTCTCATATTTATTGTTGAATTTTCAAAGTTCTGATGCTCTTCGTATG

mRNA sequence

GTTTGCCATTAATTAGGGTTTTCGAGCAGGCCTCGTCGACGTCCAGCCGTCATGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTCACACAATATAAGAAGGGGAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAACAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGTTGCAAACACGTATCCCAGCACGCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAGACCCTTTATCAGTTTTTATCTTTTGTCATTTCTTTTTCGTAAGATCAGTTATGGAGATTTTGCAGCATTACTCTGTTTTGTTAATGAATTAGCTCTACATGTCCTAACGATACTATTTAGCTGAAACTTTCTCATATTTATTGTTGAATTTTCAAAGTTCTGATGCTCTTCGTATG

Coding sequence (CDS)

ATGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTCACACAATATAAGAAGGGGAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAACAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGTTGCAAACACGTATCCCAGCACGCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAG

Protein sequence

MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Homology
[Close]
BLAST of Carg11196 vs. NCBI nr
Match: KZV34690.1 (hypothetical protein F511_00592 [Dorcoceras hygrometricum])

HSP 1 Score: 216.1 bits (549), Expect = 5.8e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 606 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 665

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 666 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 710

[Close]
BLAST of Carg11196 vs. NCBI nr
Match: XP_019152128.1 (PREDICTED: 60S ribosomal protein L44-like isoform X1 [Ipomoea nil] >XP_019152129.1 PREDICTED: 60S ribosomal protein L44-like isoform X2 [Ipomoea nil] >XP_019163351.1 PREDICTED: 60S ribosomal protein L44-like [Ipomoea nil] >XP_022934630.1 60S ribosomal protein L44 [Cucurbita moschata] >XP_022948797.1 60S ribosomal protein L44 [Cucurbita moschata] >XP_022953809.1 60S ribosomal protein L44 [Cucurbita moschata] >XP_022959528.1 60S ribosomal protein L44 [Cucurbita moschata] >XP_022982645.1 60S ribosomal protein L44 [Cucurbita maxima] >XP_022991490.1 60S ribosomal protein L44 [Cucurbita maxima] >XP_022998505.1 60S ribosomal protein L44 [Cucurbita maxima] >XP_023004701.1 60S ribosomal protein L44 [Cucurbita maxima] >XP_023524815.1 60S ribosomal protein L44 [Cucurbita pepo subsp. pepo] >XP_023526442.1 60S ribosomal protein L44 [Cucurbita pepo subsp. pepo] >XP_023548138.1 60S ribosomal protein L44 [Cucurbita pepo subsp. pepo] >XP_023514721.1 60S ribosomal protein L44 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.1 bits (549), Expect = 5.8e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg11196 vs. NCBI nr
Match: XP_003593138.1 (60S ribosomal protein L44 [Medicago truncatula] >XP_003625541.1 60S ribosomal protein L44 [Medicago truncatula] >XP_004485546.1 PREDICTED: 60S ribosomal protein L44 [Cicer arietinum] >XP_004504763.1 PREDICTED: 60S ribosomal protein L44 [Cicer arietinum] >XP_013457222.1 60S ribosomal protein L44 [Medicago truncatula] >AES63389.1 60S ribosomal protein L36a [Medicago truncatula] >AES81759.1 60S ribosomal protein L36a [Medicago truncatula] >AFK36022.1 unknown [Lotus japonicus] >AFK39143.1 unknown [Medicago truncatula] >AFK44123.1 unknown [Medicago truncatula] >AFK46144.1 unknown [Lotus japonicus] >KEH31253.1 60S ribosomal protein L36a [Medicago truncatula] >PNX77022.1 60S ribosomal protein l44-like [Trifolium pratense] >PNX92963.1 60S ribosomal protein l44-like [Trifolium pratense] >PNX98133.1 60S ribosomal protein l44-like [Trifolium pratense])

HSP 1 Score: 215.3 bits (547), Expect = 9.8e-53
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg11196 vs. NCBI nr
Match: XP_019187758.1 (PREDICTED: 60S ribosomal protein L44 [Ipomoea nil])

HSP 1 Score: 214.9 bits (546), Expect = 1.3e-52
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg11196 vs. NCBI nr
Match: XP_008371544.1 (PREDICTED: 60S ribosomal protein L44-like [Malus domestica] >XP_008349182.2 PREDICTED: 60S ribosomal protein L44 [Malus domestica])

HSP 1 Score: 214.2 bits (544), Expect = 2.2e-52
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 24  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 83

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 84  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 128

[Close]
BLAST of Carg11196 vs. TAIR10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 203.4 bits (516), Expect = 7.0e-53
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg11196 vs. TAIR10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 179.1 bits (453), Expect = 1.4e-45
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 1  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI 94
          KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEI
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

[Close]
BLAST of Carg11196 vs. Swiss-Prot
Match: sp|Q96499|RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 213.0 bits (541), Expect = 1.6e-54
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg11196 vs. Swiss-Prot
Match: sp|O23290|RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-51
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg11196 vs. Swiss-Prot
Match: sp|O59870|RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=5421 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 174.5 bits (441), Expect = 6.3e-43
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 61  KAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]
BLAST of Carg11196 vs. Swiss-Prot
Match: sp|A8PCG3|RL44_COPC7 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) OX=240176 GN=RPL44 PE=3 SV=2)

HSP 1 Score: 172.9 bits (437), Expect = 1.8e-42
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK KG +L
Sbjct: 61  KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104

[Close]
BLAST of Carg11196 vs. Swiss-Prot
Match: sp|Q9UWE4|RL44_COPCI (60S ribosomal protein L44 OS=Coprinopsis cinerea OX=5346 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 1.8e-42
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK KG +L
Sbjct: 61  KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104

[Close]
BLAST of Carg11196 vs. TrEMBL
Match: tr|A0A1S2YH67|A0A1S2YH67_CICAR (60S ribosomal protein L44 OS=Cicer arietinum OX=3827 GN=LOC101514165 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.5e-53
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg11196 vs. TrEMBL
Match: tr|A0A2K3MQ78|A0A2K3MQ78_TRIPR (60S ribosomal protein l44-like OS=Trifolium pratense OX=57577 GN=L195_g016111 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.5e-53
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg11196 vs. TrEMBL
Match: tr|G7L0P4|G7L0P4_MEDTR (60S ribosomal protein L36a OS=Medicago truncatula OX=3880 GN=25493298 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.5e-53
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg11196 vs. TrEMBL
Match: tr|I3S6Y0|I3S6Y0_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.5e-53
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg11196 vs. TrEMBL
Match: tr|Q00508|Q00508_CANMA (Ribosomal protein L41 OS=Candida maltosa OX=5479 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

The following BLAST results are available for this feature:
BLAST of Carg11196 vs. NCBI nr
Match NameE-valueIdentityDescription
KZV34690.15.8e-53100.00hypothetical protein F511_00592 [Dorcoceras hygrometricum][more]
XP_019152128.15.8e-53100.00PREDICTED: 60S ribosomal protein L44-like isoform X1 [Ipomoea nil] >XP_019152129... [more]
XP_003593138.19.8e-5399.0560S ribosomal protein L44 [Medicago truncatula] >XP_003625541.1 60S ribosomal pr... [more]
XP_019187758.11.3e-5299.05PREDICTED: 60S ribosomal protein L44 [Ipomoea nil][more]
XP_008371544.12.2e-5299.05PREDICTED: 60S ribosomal protein L44-like [Malus domestica] >XP_008349182.2 PRED... [more]
BLAST of Carg11196 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23390.17.0e-5393.33Zinc-binding ribosomal protein family protein[more]
AT4G14320.21.4e-4592.47Zinc-binding ribosomal protein family protein[more]
BLAST of Carg11196 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q96499|RL44_GOSHI1.6e-5498.1060S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3[more]
sp|O23290|RL36A_ARATH1.3e-5193.3360S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3[more]
sp|O59870|RL44_PHARH6.3e-4378.8560S ribosomal protein L44 OS=Phaffia rhodozyma OX=5421 GN=RPL44 PE=3 SV=3[more]
sp|A8PCG3|RL44_COPC71.8e-4277.8860S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC ... [more]
sp|Q9UWE4|RL44_COPCI1.8e-4277.8860S ribosomal protein L44 OS=Coprinopsis cinerea OX=5346 GN=RPL44 PE=3 SV=3[more]
BLAST of Carg11196 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S2YH67|A0A1S2YH67_CICAR6.5e-5399.0560S ribosomal protein L44 OS=Cicer arietinum OX=3827 GN=LOC101514165 PE=3 SV=1[more]
tr|A0A2K3MQ78|A0A2K3MQ78_TRIPR6.5e-5399.0560S ribosomal protein l44-like OS=Trifolium pratense OX=57577 GN=L195_g016111 PE... [more]
tr|G7L0P4|G7L0P4_MEDTR6.5e-5399.0560S ribosomal protein L36a OS=Medicago truncatula OX=3880 GN=25493298 PE=2 SV=1[more]
tr|I3S6Y0|I3S6Y0_LOTJA6.5e-5399.05Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
tr|Q00508|Q00508_CANMA1.4e-5299.05Ribosomal protein L41 OS=Candida maltosa OX=5479 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR000552Ribosomal_L44e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11196-RACarg11196-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000552Ribosomal protein L44ePFAMPF00935Ribosomal_L44coord: 19..94
e-value: 6.2E-36
score: 122.6
IPR000552Ribosomal protein L44ePANTHERPTHR1036960S RIBOSOMAL PROTEIN L36A/L44coord: 1..105
IPR000552Ribosomal protein L44ePROSITEPS01172RIBOSOMAL_L44Ecoord: 63..74
IPR000552Ribosomal protein L44ePRODOMPD002841coord: 20..93
e-value: 1.0E-35
score: 369.0
NoneNo IPR availableGENE3DG3DSA:3.10.450.80coord: 1..105
e-value: 1.4E-52
score: 178.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..48
IPR011332Zinc-binding ribosomal proteinSUPERFAMILYSSF57829Zn-binding ribosomal proteinscoord: 2..94

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg11196Cla017307Watermelon (97103) v1carwmB0816
Carg11196Csa3G653380Cucumber (Chinese Long) v2carcuB0830
Carg11196Csa7G420750Cucumber (Chinese Long) v2carcuB0833
Carg11196MELO3C024020Melon (DHL92) v3.5.1carmeB0811
Carg11196MELO3C023594Melon (DHL92) v3.5.1carmeB0809
Carg11196ClCG10G011990Watermelon (Charleston Gray)carwcgB0792
Carg11196ClCG09G004520Watermelon (Charleston Gray)carwcgB0791
Carg11196CSPI03G28970Wild cucumber (PI 183967)carcpiB0851
Carg11196CSPI07G18790Wild cucumber (PI 183967)carcpiB0855
Carg11196Cucsa.192230Cucumber (Gy14) v1carcgyB0930
Carg11196CmaCh08G005020Cucurbita maxima (Rimu)carcmaB1136
Carg11196CmaCh17G009880Cucurbita maxima (Rimu)carcmaB1133
Carg11196CmaCh01G002500Cucurbita maxima (Rimu)carcmaB1134
Carg11196CmoCh17G009580Cucurbita moschata (Rifu)carcmoB1103
Carg11196CmoCh14G009960Cucurbita moschata (Rifu)carcmoB1102
Carg11196CmoCh08G004950Cucurbita moschata (Rifu)carcmoB1107
Carg11196CmoCh01G002600Cucurbita moschata (Rifu)carcmoB1105
Carg11196Lsi02G025320Bottle gourd (USVL1VR-Ls)carlsiB747
Carg11196Cp4.1LG02g15820Cucurbita pepo (Zucchini)carcpeB1146
Carg11196Cp4.1LG12g06470Cucurbita pepo (Zucchini)carcpeB1143
Carg11196Cp4.1LG17g07830Cucurbita pepo (Zucchini)carcpeB1145
Carg11196Cp4.1LG03g04810Cucurbita pepo (Zucchini)carcpeB1147
Carg11196CsGy3G026850Cucumber (Gy14) v2carcgybB0803
Carg11196CsGy7G017220Cucumber (Gy14) v2carcgybB0808
Carg11196MELO3C024020.2Melon (DHL92) v3.6.1carmedB0822
Carg11196MELO3C023594.2Melon (DHL92) v3.6.1carmedB0820
Carg11196CsaV3_7G030620Cucumber (Chinese Long) v3carcucB0858
Carg11196CsaV3_3G031360Cucumber (Chinese Long) v3carcucB0854
Carg11196Cla97C10G194800Watermelon (97103) v2carwmbB0851
Carg11196Cla97C09G166870Watermelon (97103) v2carwmbB0852
Carg11196Bhi11G001137Wax gourdcarwgoB0951
Carg11196Bhi09G000604Wax gourdcarwgoB0953
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg11196Carg07079Silver-seed gourdcarcarB133
Carg11196Carg13415Silver-seed gourdcarcarB454
Carg11196Carg07343Silver-seed gourdcarcarB605
The following block(s) are covering this gene:
GeneOrganismBlock
Carg11196Cucumber (Gy14) v2carcgybB0802
Carg11196Cucumber (Gy14) v1carcgyB0929
Carg11196Cucurbita maxima (Rimu)carcmaB1132
Carg11196Wild cucumber (PI 183967)carcpiB0850
Carg11196Cucumber (Chinese Long) v2carcuB0829
Carg11196Cucumber (Chinese Long) v3carcucB0853
Carg11196Bottle gourd (USVL1VR-Ls)carlsiB748