Carg07343 (gene) Silver-seed gourd

Overview
NameCarg07343
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description60S ribosomal protein L44
LocationCucurbita_argyrosperma_scaffold_019 : 243082 .. 245061 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACTGGATCAGTGAGTGCAAACGTGGTAGTGGAGGATCATATTGGTTCGTAATATTTGTTGTCTTATTGATGTTTTTAGCTAGTAGTGTCGTAGTTTATAATTTGAATATGGATACTGTATTGGGAAACAGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTCCACAAGAAGGTTAGTTAGTTTTTCTCTCATCCAGTCAATTCTTACTTTCTTTCTTTTCCACGAGGCAAGGAAATCAAAATTGAAGTGAAACATGTGAATCTCACAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCACGCTATCAAGGTTAGAATGCCAAGTATTTCATCATTTTCTGTTCACGGGCTTTCACTATTCAGTATCTTGTTAATTTAGTGCACTTGTTCGAACAATCTTTCAAGCATATAGTGGTTTTCAAACTGCATACTTAAGGTAGTTGTCTCTGGGGTCCCATAGAGCTACATTCATTTTACCCCCCTAAAATAAATGCCACTTGACTGCTATACCTGTGAATGCCCCTGGAACACAACATTCGCATTTGGGGTGAAATATTTGGTTGGGACTCTGTTTTCAATTGCAAAATTTTTTTCTAAGCACTTATCGCGATGGATTGTTAGCTGTTTTAGAAAGGTCCAAATGTGGAAAAGAAACTTTCATCAGTTAGCTGAGTACTTTGTCGGCTCCTTATTTCATTTCTAACTAAATAACTTAATTGGCAAATGCAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCTCTTTTCTAGATCCGTTGTCTGCTCTTAGCTTTTGTGATTTCTTTTTGACAAAATCAATTGTTATCGGAGATGTTACAGCATTACTCTGTTTGGTTCTCCAATTAGTTCTAAATGTCGTAACAATACTATTTAGCTTAAGCCATCTCATCTCAATTATCAAATTTCCAAATTTTTTTTTGCTTTTCGTTTAGTTGTTTCTCAAAGAAACTTGTGTTTGAAGTGCTTTCATAGCTTAACCATTTGATTTTTGAGAATAATTATTGTTAGCTTACATTTAGTTCAGGCAATGATATTCATCCATTGACTTGACAGTGCTTGAATCTCACATAAGAGCCAATGTAGCCAATTGTAATTTTGAACTCACATCTTAACACCTATCCTAAAAGGCTCTACCAATCTCTTTGAACAACAAACACAACGAAAAACTTGAAGAAAAGAAAAGCCACCCTGTATCTATAACATATTTGGGTCCACTGATATCCAAATCATGTATATATGAAGCAAAAGCCAATTACCACAGTAACGCTAAACCATTGGACAACAGCATTAAAGAGTGAAACCAGCTGCAAATGATTAACACTGCTGAAGAACAACACACAAAATTAACTCCGATTGTCAAAAAATAATGTTACATTTGAAAGGAAGAACAGAACAATCCAGTTCAAAATCCAAAATATCCATGTTTTGCACTATAAATGTGTTTTCTCAGTAGTATTTGCAATATACACATAAAAGACCATATCGATACCAAAGGGACGAGTCTACTATACAAAATTGTGCCACAATGGTGTAAGAATCTTATCAAAGCCCTCCAGTGTCCCCTACACTATGCAGCACATGACACAATGAACAAAGTTAATGGAGTTCCAATTTCCCGCATCATATAATGTATGCTATTCATGTAACTACGAAAAGTTGGAACTGTGATACACCTGAAGCATGATATTGTGTAGAATTGAACTAGAAGAAGCAAACATAATATGGATAAAGTAAAGACATTTGTTGTCATACGAGCAAAATTT

mRNA sequence

ATGGATACTGGATCAGTGAGTGCAAACGTGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTCCACAAGAAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCACGCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCTCTTTTCTAGATCCGTTGTCTGCTCTTAGCTTTTGTGATTTCTTTTTGACAAAATCAATTGTTATCGGAGATGTTACAGCATTACTCTGTTTGGTTCTCCAATTAGTTCTAAATGTCGTAACAATACTATTTAGCTTAAGCCATCTCATCTCAATTATCAAATTTCCAAATTTTTTTTTGCTTTTCGTTTAGTTGTTTCTCAAAGAAACTTGTGTTTGAAGTGCTTTCATAGCTTAACCATTTGATTTTTGAGAATAATTATTGTTAGCTTACATTTAGTTCAGGCAATGATATTCATCCATTGACTTGACAGTGCTTGAATCTCACATAAGAGCCAATGTAGCCAATTGTAATTTTGAACTCACATCTTAACACCTATCCTAAAAGGCTCTACCAATCTCTTTGAACAACAAACACAACGAAAAACTTGAAGAAAAGAAAAGCCACCCTGTATCTATAACATATTTGGGTCCACTGATATCCAAATCATGTATATATGAAGCAAAAGCCAATTACCACAGTAACGCTAAACCATTGGACAACAGCATTAAAGAGTGAAACCAGCTGCAAATGATTAACACTGCTGAAGAACAACACACAAAATTAACTCCGATTGTCAAAAAATAATGTTACATTTGAAAGGAAGAACAGAACAATCCAGTTCAAAATCCAAAATATCCATGTTTTGCACTATAAATGTGTTTTCTCAGTAGTATTTGCAATATACACATAAAAGACCATATCGATACCAAAGGGACGAGTCTACTATACAAAATTGTGCCACAATGGTGTAAGAATCTTATCAAAGCCCTCCAGTGTCCCCTACACTATGCAGCACATGACACAATGAACAAAGTTAATGGAGTTCCAATTTCCCGCATCATATAATGTATGCTATTCATGTAACTACGAAAAGTTGGAACTGTGATACACCTGAAGCATGATATTGTGTAGAATTGAACTAGAAGAAGCAAACATAATATGGATAAAGTAAAGACATTTGTTGTCATACGAGCAAAATTT

Coding sequence (CDS)

ATGGATACTGGATCAGTGAGTGCAAACGTGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTCCACAAGAAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCACGCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCTCTTTTCTAG

Protein sequence

MDTGSVSANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Homology
[Close]
BLAST of Carg07343 vs. NCBI nr
Match: KZV34690.1 (hypothetical protein F511_00592 [Dorcoceras hygrometricum])

HSP 1 Score: 216.1 bits (549), Expect = 6.3e-53
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 0 

Query: 3   TGSVSANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 62
           T  V + +VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ
Sbjct: 599 TDIVPSAMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 658

Query: 63  TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 115
           TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 659 TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 710

[Close]
BLAST of Carg07343 vs. NCBI nr
Match: XP_019152128.1 (PREDICTED: 60S ribosomal protein L44-like isoform X1 [Ipomoea nil] >XP_019152129.1 PREDICTED: 60S ribosomal protein L44-like isoform X2 [Ipomoea nil] >XP_019163351.1 PREDICTED: 60S ribosomal protein L44-like [Ipomoea nil] >XP_022934630.1 60S ribosomal protein L44 [Cucurbita moschata] >XP_022948797.1 60S ribosomal protein L44 [Cucurbita moschata] >XP_022953809.1 60S ribosomal protein L44 [Cucurbita moschata] >XP_022959528.1 60S ribosomal protein L44 [Cucurbita moschata] >XP_022982645.1 60S ribosomal protein L44 [Cucurbita maxima] >XP_022991490.1 60S ribosomal protein L44 [Cucurbita maxima] >XP_022998505.1 60S ribosomal protein L44 [Cucurbita maxima] >XP_023004701.1 60S ribosomal protein L44 [Cucurbita maxima] >XP_023524815.1 60S ribosomal protein L44 [Cucurbita pepo subsp. pepo] >XP_023526442.1 60S ribosomal protein L44 [Cucurbita pepo subsp. pepo] >XP_023548138.1 60S ribosomal protein L44 [Cucurbita pepo subsp. pepo] >XP_023514721.1 60S ribosomal protein L44 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.9 bits (546), Expect = 1.4e-52
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 10  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 69
           +VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 70  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 115
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg07343 vs. NCBI nr
Match: OIT01897.1 (60s ribosomal protein l44, partial [Nicotiana attenuata])

HSP 1 Score: 214.5 bits (545), Expect = 1.8e-52
Identity = 105/110 (95.45%), Postives = 106/110 (96.36%), Query Frame = 0 

Query: 5   SVSANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 64
           S  A +VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 26  SSPATMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 85

Query: 65  PVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 115
           PVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 86  PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 135

[Close]
BLAST of Carg07343 vs. NCBI nr
Match: KJB79863.1 (hypothetical protein B456_013G070100 [Gossypium raimondii])

HSP 1 Score: 214.2 bits (544), Expect = 2.4e-52
Identity = 104/110 (94.55%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 5   SVSANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 64
           S +A +VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 24  SPAATMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 83

Query: 65  PVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 115
           PVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 84  PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 133

[Close]
BLAST of Carg07343 vs. NCBI nr
Match: PHU23746.1 (60S ribosomal protein L44 [Capsicum chinense])

HSP 1 Score: 214.2 bits (544), Expect = 2.4e-52
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 9   NVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 68
           +VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 24  SVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 83

Query: 69  KKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 115
           KKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 84  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 129

[Close]
BLAST of Carg07343 vs. TAIR10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 202.2 bits (513), Expect = 1.7e-52
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 0 

Query: 10  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 69
           +VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 70  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 115
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg07343 vs. TAIR10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 177.6 bits (449), Expect = 4.5e-45
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 10  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 69
           +VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 70  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI 103
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEI
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

[Close]
BLAST of Carg07343 vs. Swiss-Prot
Match: sp|Q96499|RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 211.8 bits (538), Expect = 3.9e-54
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 10  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 69
           +VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 70  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 115
           KAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg07343 vs. Swiss-Prot
Match: sp|O23290|RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 202.2 bits (513), Expect = 3.1e-51
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 0 

Query: 10  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 69
           +VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 70  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 115
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg07343 vs. Swiss-Prot
Match: sp|O59870|RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=5421 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 2.0e-42
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 0 

Query: 10  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 69
           +VNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 70  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 114
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 61  KAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]
BLAST of Carg07343 vs. Swiss-Prot
Match: sp|A8PCG3|RL44_COPC7 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) OX=240176 GN=RPL44 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 5.8e-42
Identity = 80/104 (76.92%), Postives = 93/104 (89.42%), Query Frame = 0 

Query: 10  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 69
           +VN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 70  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 114
           KAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK KG +L
Sbjct: 61  KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104

[Close]
BLAST of Carg07343 vs. Swiss-Prot
Match: sp|Q9UWE4|RL44_COPCI (60S ribosomal protein L44 OS=Coprinopsis cinerea OX=5346 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 5.8e-42
Identity = 80/104 (76.92%), Postives = 93/104 (89.42%), Query Frame = 0 

Query: 10  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 69
           +VN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 70  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 114
           KAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK KG +L
Sbjct: 61  KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104

[Close]
BLAST of Carg07343 vs. TrEMBL
Match: tr|F6HF51|F6HF51_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g02080 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52
Identity = 105/112 (93.75%), Postives = 107/112 (95.54%), Query Frame = 0 

Query: 3   TGSVSANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 62
           +GS S   VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ
Sbjct: 241 SGSKSNESVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 300

Query: 63  TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 115
           TKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 301 TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 352

[Close]
BLAST of Carg07343 vs. TrEMBL
Match: tr|A0A1J6J3M0|A0A1J6J3M0_NICAT (60s ribosomal protein l44 (Fragment) OS=Nicotiana attenuata OX=49451 GN=RPL44_3 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52
Identity = 105/110 (95.45%), Postives = 106/110 (96.36%), Query Frame = 0 

Query: 5   SVSANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 64
           S  A +VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 26  SSPATMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 85

Query: 65  PVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 115
           PVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 86  PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 135

[Close]
BLAST of Carg07343 vs. TrEMBL
Match: tr|A0A1S2YH67|A0A1S2YH67_CICAR (60S ribosomal protein L44 OS=Cicer arietinum OX=3827 GN=LOC101514165 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.6e-52
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 10  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 69
           +VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 70  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 115
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg07343 vs. TrEMBL
Match: tr|A0A2K3MQ78|A0A2K3MQ78_TRIPR (60S ribosomal protein l44-like OS=Trifolium pratense OX=57577 GN=L195_g016111 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.6e-52
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 10  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 69
           +VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 70  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 115
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]
BLAST of Carg07343 vs. TrEMBL
Match: tr|G7L0P4|G7L0P4_MEDTR (60S ribosomal protein L36a OS=Medicago truncatula OX=3880 GN=25493298 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.6e-52
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 10  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 69
           +VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 70  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 115
           KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

The following BLAST results are available for this feature:
BLAST of Carg07343 vs. NCBI nr
Match NameE-valueIdentityDescription
KZV34690.16.3e-5394.64hypothetical protein F511_00592 [Dorcoceras hygrometricum][more]
XP_019152128.11.4e-5299.05PREDICTED: 60S ribosomal protein L44-like isoform X1 [Ipomoea nil] >XP_019152129... [more]
OIT01897.11.8e-5295.4560s ribosomal protein l44, partial [Nicotiana attenuata][more]
KJB79863.12.4e-5294.55hypothetical protein B456_013G070100 [Gossypium raimondii][more]
PHU23746.12.4e-5298.1160S ribosomal protein L44 [Capsicum chinense][more]
BLAST of Carg07343 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23390.11.7e-5292.38Zinc-binding ribosomal protein family protein[more]
AT4G14320.24.5e-4591.40Zinc-binding ribosomal protein family protein[more]
BLAST of Carg07343 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q96499|RL44_GOSHI3.9e-5497.1460S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3[more]
sp|O23290|RL36A_ARATH3.1e-5192.3860S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3[more]
sp|O59870|RL44_PHARH2.0e-4277.8860S ribosomal protein L44 OS=Phaffia rhodozyma OX=5421 GN=RPL44 PE=3 SV=3[more]
sp|A8PCG3|RL44_COPC75.8e-4276.9260S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC ... [more]
sp|Q9UWE4|RL44_COPCI5.8e-4276.9260S ribosomal protein L44 OS=Coprinopsis cinerea OX=5346 GN=RPL44 PE=3 SV=3[more]
BLAST of Carg07343 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|F6HF51|F6HF51_VITVI1.2e-5293.75Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g02080 PE=3 SV=... [more]
tr|A0A1J6J3M0|A0A1J6J3M0_NICAT1.2e-5295.4560s ribosomal protein l44 (Fragment) OS=Nicotiana attenuata OX=49451 GN=RPL44_3 ... [more]
tr|A0A1S2YH67|A0A1S2YH67_CICAR1.6e-5298.1060S ribosomal protein L44 OS=Cicer arietinum OX=3827 GN=LOC101514165 PE=3 SV=1[more]
tr|A0A2K3MQ78|A0A2K3MQ78_TRIPR1.6e-5298.1060S ribosomal protein l44-like OS=Trifolium pratense OX=57577 GN=L195_g016111 PE... [more]
tr|G7L0P4|G7L0P4_MEDTR1.6e-5298.1060S ribosomal protein L36a OS=Medicago truncatula OX=3880 GN=25493298 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR000552Ribosomal_L44e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07343-RACarg07343-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000552Ribosomal protein L44ePFAMPF00935Ribosomal_L44coord: 28..103
e-value: 8.1E-36
score: 122.3
IPR000552Ribosomal protein L44ePANTHERPTHR1036960S RIBOSOMAL PROTEIN L36A/L44coord: 11..114
IPR000552Ribosomal protein L44ePROSITEPS01172RIBOSOMAL_L44Ecoord: 72..83
IPR000552Ribosomal protein L44ePRODOMPD002841coord: 29..102
e-value: 4.0E-36
score: 373.0
NoneNo IPR availableGENE3DG3DSA:3.10.450.80coord: 10..114
e-value: 9.4E-52
score: 175.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..66
IPR011332Zinc-binding ribosomal proteinSUPERFAMILYSSF57829Zn-binding ribosomal proteinscoord: 11..103

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg07343Cla015200Watermelon (97103) v1carwmB0757
Carg07343Cla017307Watermelon (97103) v1carwmB0759
Carg07343Csa7G420750Cucumber (Chinese Long) v2carcuB0783
Carg07343Csa3G653380Cucumber (Chinese Long) v2carcuB0777
Carg07343MELO3C024020Melon (DHL92) v3.5.1carmeB0755
Carg07343MELO3C023594Melon (DHL92) v3.5.1carmeB0753
Carg07343ClCG10G011990Watermelon (Charleston Gray)carwcgB0738
Carg07343ClCG09G004520Watermelon (Charleston Gray)carwcgB0735
Carg07343CSPI03G28970Wild cucumber (PI 183967)carcpiB0795
Carg07343CSPI07G18790Wild cucumber (PI 183967)carcpiB0801
Carg07343Cucsa.128290Cucumber (Gy14) v1carcgyB0857
Carg07343Cucsa.192230Cucumber (Gy14) v1carcgyB0860
Carg07343CmaCh17G009880Cucurbita maxima (Rimu)carcmaB1058
Carg07343CmaCh08G005020Cucurbita maxima (Rimu)carcmaB1060
Carg07343CmaCh01G002500Cucurbita maxima (Rimu)carcmaB1059
Carg07343CmoCh08G004950Cucurbita moschata (Rifu)carcmoB1034
Carg07343CmoCh01G002600Cucurbita moschata (Rifu)carcmoB1033
Carg07343CmoCh14G009960Cucurbita moschata (Rifu)carcmoB1031
Carg07343CmoCh17G009580Cucurbita moschata (Rifu)carcmoB1032
Carg07343Lsi02G025320Bottle gourd (USVL1VR-Ls)carlsiB697
Carg07343Cp4.1LG12g06470Cucurbita pepo (Zucchini)carcpeB1070
Carg07343Cp4.1LG02g15820Cucurbita pepo (Zucchini)carcpeB1072
Carg07343Cp4.1LG03g04810Cucurbita pepo (Zucchini)carcpeB1073
Carg07343Cp4.1LG17g07830Cucurbita pepo (Zucchini)carcpeB1071
Carg07343CsGy3G026850Cucumber (Gy14) v2carcgybB0754
Carg07343CsGy7G017220Cucumber (Gy14) v2carcgybB0760
Carg07343MELO3C024020.2Melon (DHL92) v3.6.1carmedB0770
Carg07343MELO3C023594.2Melon (DHL92) v3.6.1carmedB0768
Carg07343CsaV3_7G030620Cucumber (Chinese Long) v3carcucB0804
Carg07343CsaV3_3G031360Cucumber (Chinese Long) v3carcucB0798
Carg07343Cla97C10G194800Watermelon (97103) v2carwmbB0794
Carg07343Cla97C09G166870Watermelon (97103) v2carwmbB0796
Carg07343Bhi11G001137Wax gourdcarwgoB0894
Carg07343Bhi09G000604Wax gourdcarwgoB0897
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg07343Carg07079Silver-seed gourdcarcarB132
Carg07343Carg13415Silver-seed gourdcarcarB453
Carg07343Carg11196Silver-seed gourdcarcarB605
The following block(s) are covering this gene:
GeneOrganismBlock
Carg07343Cucumber (Gy14) v2carcgybB0756
Carg07343Cucumber (Gy14) v1carcgyB0861
Carg07343Cucurbita maxima (Rimu)carcmaB1057
Carg07343Wild cucumber (PI 183967)carcpiB0797
Carg07343Cucumber (Chinese Long) v2carcuB0779
Carg07343Cucumber (Chinese Long) v3carcucB0800
Carg07343Bottle gourd (USVL1VR-Ls)carlsiB699