CSPI07G18790 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G18790
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	60S ribosomal protein L44
Location	Chr7 : 16703458 .. 16705052 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCGCCGATTAGGGTTTCTTCGGAGAAGTTGTGAGGACAAGAATCCACCATGGTAATCTTCATTCCACAATTTTTTGCTGTTTGTTTCGGTTTTCCCCTTGCTAATGAATCTATGCATTTTTCGGTGATGAGAACTTAACTTTTAGCTGGAAAAACTGAAGCGAATGTTCTTCATCCTTTAATTTTATCCTATTTGATTCAAATTATCGGTTTTGTGGAGCCTAGTAGATAAGAGAATGTGTTGCAAATGCGTTTGGTAGTATCGAATATTGGATTGATTAGTTCCGGATTTTTTTATTGGCATTTATGAAGGGCATTCTTCTTTTAGACGATTATGCTGTTGGTCTATGCAGTGTGAATATTCGGGTTTTTATTTTCTTATAGTTTGTTGGTTTTTGGGAAGTGTTAATGCTGTAGATCTGGGAAAGAAATTGGTATCATTGACACTTGAGAGACTAGAACTGTCATTGTAAACTTGCTTTATAATTCATTCAAGAACATTTTCTGATTTTTCTCCATTCAATCAATTAGGGCGCTATGTATTTGTGTGTATATTTGTTTTTATAGTGTTAAGTTCTTCAGTGTGATTTTAAAATTCCAATGATGTTAAATTTTGCTGCTAAATAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGTAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGACAGCCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATATGGTGGACAAACCAAGCCTGTCTTTCACAAGAAGGTGAAACTCTCTTCCATGATCTGTTCAACCCAAAACCAAATTTTCTTTCTTCTCCTTGAATAAGTAATAATGGGAGCTTTTAACTTTCCTTCTAGGCTAAAACTACAAAGAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCACAGCATCCCATTAAGGTTTGTATTCCAAGAATATATCTCATTCATCAGTGTTTATATGCTGATCTGATACCAACTATTTGTTAGGACAGAACTGAAATTTTGGTCATCCTTTAATTAATTTCTTGTTGGTTAATGTCTTATCATTTGTTAATGCAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAGATGCATTAACATTGTCATTCACTATATATTGCTGTTTAGGGAGTCAGAATTGTGGGCTTGTTTCTGCCCTTTGCTTTTTTGTTTTGGTGTTTCTGATATTTGGGAACATTTTTACTTGTTGAATTTTGTTTAATGTATCAGTTTATAATGGAACAACTAGCTTTATCTTCTACCCAATGTCGTATTATCTGTTTGTTTGAATTGCACAGCTTCATTCTTTGCTGCTGTGATGGGGAGTTGTTTTCTTTGTTTTTTTTAGTACAAATTTGGTGTGGTGGGTTTGAACCCGACACTCTTGTATCACTGACTTTGTTTGAAGTTAAACTCAAATCCTAAGACCAGTGGCTAATTAAAAGAAGAATGACCATACCAGAGGAAAAAGATTGCAAAACTGTTTTCTAGTACATCGTGGGGAC

mRNA sequence

ATGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGTAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGACAGCCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATATGGTGGACAAACCAAGCCTGTCTTTCACAAGAAGGCTAAAACTACAAAGAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCACAGCATCCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG

Coding sequence (CDS)

ATGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGTAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGACAGCCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATATGGTGGACAAACCAAGCCTGTCTTTCACAAGAAGGCTAAAACTACAAAGAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCACAGCATCCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG

Homology

[Close]

BLAST of CSPI07G18790 vs. Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 219.2 bits (557), Expect = 2.2e-56
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CSPI07G18790 vs. Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 207.2 bits (526), Expect = 8.7e-53
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CSPI07G18790 vs. Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 174.9 bits (442), Expect = 4.8e-43
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 61  KAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]

BLAST of CSPI07G18790 vs. Swiss-Prot
Match: RL44_CRYNB (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RPL44 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.2e-43
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 61  KAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of CSPI07G18790 vs. Swiss-Prot
Match: RL44_CRYNJ (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RPL44 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.2e-43
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 61  KAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of CSPI07G18790 vs. TrEMBL
Match: A0A067L5F6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22966 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CSPI07G18790 vs. TrEMBL
Match: V4VSP8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022990mg PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CSPI07G18790 vs. TrEMBL
Match: B9RH89_RICCO (60S ribosomal protein L44 OS=Ricinus communis GN=RCOM_1448760 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CSPI07G18790 vs. TrEMBL
Match: F6HB62_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00880 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CSPI07G18790 vs. TrEMBL
Match: A0A0D2TWL3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G070100 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 29  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 88

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 89  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 133

[Close]

BLAST of CSPI07G18790 vs. TAIR10
Match: AT3G23390.1 (AT3G23390.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 207.2 bits (526), Expect = 4.9e-54
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CSPI07G18790 vs. TAIR10
Match: AT4G14320.2 (AT4G14320.2 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 182.2 bits (461), Expect = 1.7e-46
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 1


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI 94
          KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEI
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

[Close]

BLAST of CSPI07G18790 vs. NCBI nr
Match: gi|225450117|ref|XP_002278981.1| (PREDICTED: 60S ribosomal protein L44 [Vitis vinifera])

HSP 1 Score: 219.2 bits (557), Expect = 3.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CSPI07G18790 vs. NCBI nr
Match: gi|297737946|emb|CBI27147.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 219.2 bits (557), Expect = 3.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 210 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 269

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 270 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 314

[Close]

BLAST of CSPI07G18790 vs. NCBI nr
Match: gi|823159976|ref|XP_012479828.1| (PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii])

HSP 1 Score: 219.2 bits (557), Expect = 3.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 33  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 92

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 93  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137

[Close]

BLAST of CSPI07G18790 vs. NCBI nr
Match: gi|823255310|ref|XP_012460311.1| (PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii])

HSP 1 Score: 219.2 bits (557), Expect = 3.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 68  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 127

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 128 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 172

[Close]

BLAST of CSPI07G18790 vs. NCBI nr
Match: gi|297736252|emb|CBI24890.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 219.2 bits (557), Expect = 3.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 36  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 95

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 96  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 140

The following BLAST results are available for this feature:

BLAST of CSPI07G18790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL44_GOSHI	2.2e-56	100.00	60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3	[more]
RL36A_ARATH	8.7e-53	93.33	60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3	[more]
RL44_PHARH	4.8e-43	77.88	60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3	[more]
RL44_CRYNB	8.2e-43	77.88	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
RL44_CRYNJ	8.2e-43	77.88	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]

BLAST of CSPI07G18790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067L5F6_JATCU	2.5e-54	100.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22966 PE=3 SV=1	[more]
V4VSP8_9ROSI	2.5e-54	100.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022990mg PE=3 SV=1	[more]
B9RH89_RICCO	2.5e-54	100.00	60S ribosomal protein L44 OS=Ricinus communis GN=RCOM_1448760 PE=3 SV=1	[more]
F6HB62_VITVI	2.5e-54	100.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00880 PE=3 SV=...	[more]
A0A0D2TWL3_GOSRA	2.5e-54	100.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G070100 PE=3 SV=1	[more]

BLAST of CSPI07G18790 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23390.1	4.9e-54	93.33	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.2	1.7e-46	92.47	Zinc-binding ribosomal protein family protein	[more]

BLAST of CSPI07G18790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|225450117\|ref\|XP_002278981.1\|	3.5e-54	100.00	PREDICTED: 60S ribosomal protein L44 [Vitis vinifera]	[more]
gi\|297737946\|emb\|CBI27147.3\|	3.5e-54	100.00	unnamed protein product [Vitis vinifera]	[more]
gi\|823159976\|ref\|XP_012479828.1\|	3.5e-54	100.00	PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]	[more]
gi\|823255310\|ref\|XP_012460311.1\|	3.5e-54	100.00	PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]	[more]
gi\|297736252\|emb\|CBI24890.3\|	3.5e-54	100.00	unnamed protein product [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004185	serine-type carboxypeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G18790.1	CSPI07G18790.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G18790	Cla017307	Watermelon (97103) v1	cpiwmB593
CSPI07G18790	Cla015200	Watermelon (97103) v1	cpiwmB587
CSPI07G18790	Csa7G420750	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G18790	MELO3C024020	Melon (DHL92) v3.5.1	cpimeB559
CSPI07G18790	MELO3C023594	Melon (DHL92) v3.5.1	cpimeB525
CSPI07G18790	ClCG10G011990	Watermelon (Charleston Gray)	cpiwcgB560
CSPI07G18790	ClCG09G004520	Watermelon (Charleston Gray)	cpiwcgB555
CSPI07G18790	Lsi02G025320	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G18790	MELO3C023594.2	Melon (DHL92) v3.6.1	cpimedB512
CSPI07G18790	MELO3C024020.2	Melon (DHL92) v3.6.1	cpimedB544
CSPI07G18790	CsaV3_7G030620	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G18790	Cla97C10G194800	Watermelon (97103) v2	cpiwmbB541
CSPI07G18790	Cla97C09G166870	Watermelon (97103) v2	cpiwmbB598
CSPI07G18790	Bhi09G000604	Wax gourd	cpiwgoB716
CSPI07G18790	Bhi11G001137	Wax gourd	cpiwgoB658
CSPI07G18790	Cucsa.128290	Cucumber (Gy14) v1	cgycpiB180
CSPI07G18790	CmaCh17G009880	Cucurbita maxima (Rimu)	cmacpiB392
CSPI07G18790	CmaCh01G002500	Cucurbita maxima (Rimu)	cmacpiB502
CSPI07G18790	CmaCh08G005020	Cucurbita maxima (Rimu)	cmacpiB934
CSPI07G18790	CmaCh14G009730	Cucurbita maxima (Rimu)	cmacpiB276
CSPI07G18790	CmoCh08G004950	Cucurbita moschata (Rifu)	cmocpiB913
CSPI07G18790	CmoCh01G002600	Cucurbita moschata (Rifu)	cmocpiB492
CSPI07G18790	CmoCh17G009580	Cucurbita moschata (Rifu)	cmocpiB381
CSPI07G18790	CmoCh14G009960	Cucurbita moschata (Rifu)	cmocpiB266
CSPI07G18790	Cp4.1LG12g06470	Cucurbita pepo (Zucchini)	cpecpiB163
CSPI07G18790	Cp4.1LG17g07830	Cucurbita pepo (Zucchini)	cpecpiB344
CSPI07G18790	Cp4.1LG02g15820	Cucurbita pepo (Zucchini)	cpecpiB588
CSPI07G18790	Cp4.1LG03g04810	Cucurbita pepo (Zucchini)	cpecpiB637
CSPI07G18790	CsGy7G017220	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G18790	Carg11196	Silver-seed gourd	carcpiB0855
CSPI07G18790	Carg07343	Silver-seed gourd	carcpiB0801
CSPI07G18790	Carg13415	Silver-seed gourd	carcpiB0489
CSPI07G18790	Carg07079	Silver-seed gourd	carcpiB0124

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G18790	Cucumber (Gy14) v2	cgybcpiB154
CSPI07G18790	Cucumber (Chinese Long) v3	cpicucB395
CSPI07G18790	Wild cucumber (PI 183967)	cpicpiB142
CSPI07G18790	Cucumber (Chinese Long) v2	cpicuB338
CSPI07G18790	Bottle gourd (USVL1VR-Ls)	cpilsiB530