CmaCh01G002500.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G002500.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	60S ribosomal protein L44
Location	Cma_Chr01 : 1152795 .. 1155801 (+)
Sequence length	396

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAGTAAACTGCTGAAGCGATTGGTATCGTTTTGAAAGTTCAGTGTTCTGTGGAGTTTTAGTGGCGGGCACAGATGATGGATTGTTATGGCCTTTGTTTTCTTTTGCGTGCATTTTTTTATAAGAATTGTTCGTACTGTCGATCTGAATTTGTGGTTAAAAGGCGACTGGTTCATCTTTTGTAGTCGAGTGATAGTATTTAACAAATTATGTGACGTGTTACTGAGCATCTGAAGGTGGAGAATTGACGGAGATTGGGTTGTTTCATCATGCACTTTTTTTAAGAAGGATTTTCCTCGAGTTAAACATTGCACATTGAATATATTAATGATTCTGGATCCTTGATTATGAGTTCATGGAATATTCCATAGAAAAAGGATATTAGATCAGTGAGTTCAAATGCAGTAGTGGAGGATCATATTGGTTCGTAATATTTGTTGTCTTATGATGTTTTTAGCTAGTACTGTCGTAGTTTAGAATTTGAATGTGGATACTGTACTGGGAAACAGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGTTAGTTAGTTTTTCTCTCATCCAGTCAATTCTTACTTTCTTCTTTTCCACGAGGCAAGGAAATCAAAATTGAAGTGAAACATGTGAATCTCACAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCATGCTATCAAGGTTAGAATGCAAAGTATTTCATTATTTTCTGTTTATGGGCTCTCACTATTCAGTATCTTGTTAATTTAGTCCACTTGTCCGAACAATTCAAGCATATAGTGGTTTTCAAACTGCATACTTAAGTTACCCCCTTAAAATAAATGCCACTTGACTGCTATACCTGTGAAGGCATCTGGTGCTAGGCTCTGAATGCCCCTTCATCTTTGGGGTAGTATTCTATTCTTCATTTCGGAACACAACATTCGCATTTGGGGTGATATATTTGGTTGGGACTCTGATTTCAATTGCAAAATTTTTTCTTAAAGGTCCAAATGTGGAAAAGAAACTTTCATCGGTTAGCTGAGTATTTTGTCGTTTCCTTGTTTCATTTCTAACTAAATGAATTAATTGGCAAATGCAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCTCTTTTCTAGATCCGTTGTCTGCTCTTAGCTTTTGTGATTTCTTTTTTACAAAATCAATTGTTATCGGAGATTTTACTGCATTACTCTGTTTGGTTCACCAATTAGTTCTAAACGTCGTAACAATACTATTTAGCTCAAGCCATCTTATCTCAATTATCAAATTTCCAAATTTTTTTTGCTTTTCGTTGAGTCTGTCTCGTAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGTGGAAAAAAATAAATTTTTTAGTTGAGTTGTTTCTCAAAGAAACTTGTGTTTGAAGTGTTTTCATAGCATAACCATTTGATTTTTTAGAATAATTATTGTTAGCTTGCATTTAGTTCAGGCAATTATATTCATCCATTGACTTAACAGTGCTTGAAACTCACATAAGAGCCAATGTAGCCAATTGTAATTTTGAACTCACATCTTAACACCTATCCTAAAAGGCTCTACCAATCTCTCTGATTAACAAACACAACGAAAAACTTGAAGAAAAGATAAGCCACCCCGTATCTATAACATATTTGGATCCACTGAGAACCAAATCATGTATATATGAAGCAAAAGCCAATTACCACAATAACGCTAAATCATTAAAGAGTGAAACGAGGTGCAAGTGATTAACACTGCTGAAGAGACACAAAATTAACTCCGATTGTCAAAAAATCATGTTACATTTGAAAGGAAGAACAGAACAATCCAGTTCAAAATCCAAAATATCCATGTTTTGCACTAGTCTTTTCTCAGTAGTATTTGCAGCAATTACACAAAAACGACCATATCGATACACAAATAAATCTTAAAGTCGTCCATTCAGATGTCCCCAAAGGGATGAATCTACTATGCAAAATTGTGCCACAATGGTGTAAGAATCTTATCAAAGCCCTCCAGTGTTCCCCTAAACTATGCAGCACATGACACAATGAATAAAGTTAATGGAGTTCCAATTTCCCGTATCATATAATGGATGCTATTCATATAGCTACGAAAATTTGAACTGTGATGCACCTGCCGCATGATATTGTGTAGAATTGAACTAGAAGAAGCAAACATAATATGGATAAAGTAAAGACATTTGTTGTCGTACGAGCAAAATTTGAAATTCTATTAAATTTCAAGCTTTTCTCTTTGAAATGCTAATAACAATACTGATCCAAACAGCTAAATGGACATTTAGCTAAGAAAAACAATCAATTCCATCACATCTAGGTAGATATGATCAGCTTTTAGAGAATTCTAACAAAAGTCAGTATGGAACTTTGAAATGCCACGCTTTCGCGTCATAATCCTACCTCGCATTCTTAATTTGAACCTTTATCCTTGCCTTGAGTACCAACTGCATCAGTCACCAGAGCTATTGGCCTTTGATCCATTACCTCGTCGATAATGCCAAACTCTTTGGCCTCTTCTGGGGTCATGAAATAATCCCTATCCATATACTCTTTGATAGTATCTACTGGTTGTGACGTATGCTTGGAGTACAGCTCGTTAAGTGCATCCCAAACCCGAACGATCTGTTTCGTGTGAATCGTTATGTCCTTTGCTTGCCCACTGTATCCACCAGAAGGCTGGTGAATCATGATAGTTGCATTAGGAAGCGATCGTCTCTCACCCTTGGCACCAGCAGCTAGAAGAAGAGAAGCCATTGAAGCAGCCTGACCCAAACAGATGGTATTGA

mRNA sequence

ATGGAAAAATACTGTCGTAGTTTAGAATTTGAATGTGGATACTGTACTGGGAAACAGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCATGCTATCAAGGAAGCGATCGTCTCTCACCCTTGGCACCAGCAGCTAGAAGAAGAGAAGCCATTGAAGCAGCCTGACCCAAACAGATGGTATTGA

Coding sequence (CDS)

ATGGAAAAATACTGTCGTAGTTTAGAATTTGAATGTGGATACTGTACTGGGAAACAGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCATGCTATCAAGGAAGCGATCGTCTCTCACCCTTGGCACCAGCAGCTAGAAGAAGAGAAGCCATTGAAGCAGCCTGACCCAAACAGATGGTATTGA

Protein sequence

MEKYCRSLEFECGYCTGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKEAIVSHPWHQQLEEEKPLKQPDPNRWY

Homology

[Close]

BLAST of CmaCh01G002500.1 vs. Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-41
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1


Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKKIVLRLQCQGCKHVSQH IK
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHPIK 86

[Close]

BLAST of CmaCh01G002500.1 vs. Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-38
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 1


Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKKIVLRLQCQ CKH SQ  IK
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]

BLAST of CmaCh01G002500.1 vs. Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 141.7 bits (356), Expect = 5.5e-33
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 1


Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKK+VLRL+C  CK+  Q  +K
Sbjct: 62  AKTTKKVVLRLECSVCKYKMQMTLK 86

[Close]

BLAST of CmaCh01G002500.1 vs. Swiss-Prot
Match: RL44_CRYNB (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RPL44 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-33
Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 1


Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VN+PKT++TYCK K C+KHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKK+VLRL+C  CK   Q A+K
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALK 86

[Close]

BLAST of CmaCh01G002500.1 vs. Swiss-Prot
Match: RL44_CRYNJ (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RPL44 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-33
Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 1


Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VN+PKT++TYCK K C+KHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKK+VLRL+C  CK   Q A+K
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALK 86

[Close]

BLAST of CmaCh01G002500.1 vs. TrEMBL
Match: F6HF50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02090 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 8.6e-41
Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 15  CTGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 74
           C   QVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 16  CHNSQVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 75

Query: 75  VFHKKAKTTKKIVLRLQCQGCKHVSQHAIK 105
           VFHKKAKTTKKIVLRLQCQGCKHVSQH IK
Sbjct: 76  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIK 105

[Close]

BLAST of CmaCh01G002500.1 vs. TrEMBL
Match: A0A068V1D2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041145001 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-40
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 18  KQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 77
           K VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 63  KMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 122

Query: 78  KKAKTTKKIVLRLQCQGCKHVSQHAIK 105
           KKAKTTKKIVLRLQCQGCKHVSQH IK
Sbjct: 123 KKAKTTKKIVLRLQCQGCKHVSQHPIK 149

[Close]

BLAST of CmaCh01G002500.1 vs. TrEMBL
Match: G7L0P4_MEDTR (60S ribosomal protein L36a OS=Medicago truncatula GN=MTR_2g008180 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.3e-40
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKKIVLRLQCQGCKHVSQHAIK
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIK 86

[Close]

BLAST of CmaCh01G002500.1 vs. TrEMBL
Match: I3S6Y0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.3e-40
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKKIVLRLQCQGCKHVSQHAIK
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIK 86

[Close]

BLAST of CmaCh01G002500.1 vs. TrEMBL
Match: I1KUF8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G181300 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.6e-40
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIKE 106
           AKTTKKIVLRLQCQGCKHVSQHAIK+
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIKK 87

[Close]

BLAST of CmaCh01G002500.1 vs. TAIR10
Match: AT3G23390.1 (AT3G23390.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 160.6 bits (405), Expect = 6.5e-40
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 1


Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKKIVLRLQCQ CKH SQ  IK
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]

BLAST of CmaCh01G002500.1 vs. TAIR10
Match: AT4G14320.2 (AT4G14320.2 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 160.6 bits (405), Expect = 6.5e-40
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 1


Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKKIVLRLQCQ CKH SQ  IK
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]

BLAST of CmaCh01G002500.1 vs. NCBI nr
Match: gi|661881757|emb|CDP14595.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 172.9 bits (437), Expect = 3.6e-40
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 18  KQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 77
           K VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 63  KMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 122

Query: 78  KKAKTTKKIVLRLQCQGCKHVSQHAIK 105
           KKAKTTKKIVLRLQCQGCKHVSQH IK
Sbjct: 123 KKAKTTKKIVLRLQCQGCKHVSQHPIK 149

[Close]

BLAST of CmaCh01G002500.1 vs. NCBI nr
Match: gi|357445721|ref|XP_003593138.1| (60S ribosomal protein L36a [Medicago truncatula])

HSP 1 Score: 172.6 bits (436), Expect = 4.7e-40
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIK 105
           AKTTKKIVLRLQCQGCKHVSQHAIK
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIK 86

[Close]

BLAST of CmaCh01G002500.1 vs. NCBI nr
Match: gi|297737944|emb|CBI27145.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 172.2 bits (435), Expect = 6.1e-40
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 1


Query: 19  QVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 78
           QVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 5   QVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 64

Query: 79  KAKTTKKIVLRLQCQGCKHVSQHAIK 105
           KAKTTKKIVLRLQCQGCKHVSQH IK
Sbjct: 65  KAKTTKKIVLRLQCQGCKHVSQHPIK 90

[Close]

BLAST of CmaCh01G002500.1 vs. NCBI nr
Match: gi|947095349|gb|KRH43934.1| (hypothetical protein GLYMA_08G181300 [Glycine max])

HSP 1 Score: 171.8 bits (434), Expect = 8.0e-40
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 20  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 79
           VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 80  AKTTKKIVLRLQCQGCKHVSQHAIKE 106
           AKTTKKIVLRLQCQGCKHVSQHAIK+
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIKK 87

[Close]

BLAST of CmaCh01G002500.1 vs. NCBI nr
Match: gi|297736252|emb|CBI24890.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 171.8 bits (434), Expect = 8.0e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 18  KQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 77
           K VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 35  KMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 94

Query: 78  KKAKTTKKIVLRLQCQGCKHVSQHAIK 105
           KKAKTTKKIVLRLQCQGCKHVSQH IK
Sbjct: 95  KKAKTTKKIVLRLQCQGCKHVSQHPIK 121

The following BLAST results are available for this feature:

BLAST of CmaCh01G002500.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL44_GOSHI	1.5e-41	97.65	60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3	[more]
RL36A_ARATH	1.2e-38	91.76	60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3	[more]
RL44_PHARH	5.5e-33	80.00	60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3	[more]
RL44_CRYNB	7.2e-33	80.00	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
RL44_CRYNJ	7.2e-33	80.00	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]

BLAST of CmaCh01G002500.1 vs. TrEMBL


Match Name	E-value	Identity	Description
F6HF50_VITVI	8.6e-41	94.44	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02090 PE=3 SV=...	[more]
A0A068V1D2_COFCA	2.5e-40	97.70	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041145001 PE=3 SV=1	[more]
G7L0P4_MEDTR	3.3e-40	98.82	60S ribosomal protein L36a OS=Medicago truncatula GN=MTR_2g008180 PE=2 SV=1	[more]
I3S6Y0_LOTJA	3.3e-40	98.82	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
I1KUF8_SOYBN	5.6e-40	96.51	Uncharacterized protein OS=Glycine max GN=GLYMA_08G181300 PE=3 SV=1	[more]

BLAST of CmaCh01G002500.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23390.1	6.5e-40	91.76	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.2	6.5e-40	91.76	Zinc-binding ribosomal protein family protein	[more]

BLAST of CmaCh01G002500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|661881757\|emb\|CDP14595.1\|	3.6e-40	97.70	unnamed protein product [Coffea canephora]	[more]
gi\|357445721\|ref\|XP_003593138.1\|	4.7e-40	98.82	60S ribosomal protein L36a [Medicago truncatula]	[more]
gi\|297737944\|emb\|CBI27145.3\|	6.1e-40	97.67	unnamed protein product [Vitis vinifera]	[more]
gi\|947095349\|gb\|KRH43934.1\|	8.0e-40	96.51	hypothetical protein GLYMA_08G181300 [Glycine max]	[more]
gi\|297736252\|emb\|CBI24890.3\|	8.0e-40	96.55	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000552	Ribosomal_L44e
IPR011332	Ribosomal_zn-bd

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh01G002500	CmaCh01G002500	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh01G002500.1	CmaCh01G002500.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G002500.1.exon.1	CmaCh01G002500.1.exon.1	exon
CmaCh01G002500.1.exon.2	CmaCh01G002500.1.exon.2	exon
CmaCh01G002500.1.exon.3	CmaCh01G002500.1.exon.3	exon
CmaCh01G002500.1.exon.4	CmaCh01G002500.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G002500.1.CDS.1	CmaCh01G002500.1.CDS.1	CDS
CmaCh01G002500.1.CDS.2	CmaCh01G002500.1.CDS.2	CDS
CmaCh01G002500.1.CDS.3	CmaCh01G002500.1.CDS.3	CDS
CmaCh01G002500.1.CDS.4	CmaCh01G002500.1.CDS.4	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000552	Ribosomal protein L44e	PRODOM	PD002841		coord: 38..104 score: 6.0
IPR000552	Ribosomal protein L44e	GENE3D	G3DSA:3.10.450.80		coord: 20..104 score: 1.7
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 18..104 score: 7.9
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 37..104 score: 1.1
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 81..92 scor
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 20..104 score: 3.48
None	No IPR available	PANTHER	PTHR10369:SF3	IP17351P	coord: 18..104 score: 7.9