Cp4.1LG12g06470.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g06470.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosomal protein L44
Location	Cp4.1LG12 : 7519593 .. 7520472 (+)
Sequence length	635

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATTCAACTCTTCTGCTAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAATATAAGAAGGGTAAGGACAGCCTTGCTGCTCAAGGGAAACGTCGTTACGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCCGTCTTTCATAAGAAGGTGAAAAATCTCTTTCCATGATCATTGATCTGTTCAACCCAAAACCAGAAGTTGTTTATTTTCCTTGAATAAATAATCATCAGAGCTTTAACTTTCCTTCCAGGCCAAAACTACGAAGAAGATTGTTCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGGTTTGTATTCAAAGCAAATTTCTCATTCATTGGTGTCTCTTGTTGATATCAATCAGCTATATGGTTGGATAGATCTCTTATTTTAGTTGTCCTTGAATATGGTTTTCATTAATGCATACCTTATATTTGTTTGCTATTGCAGAGATGCAAGCATTTTGAGATTGGTGGTGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAGATGCATTAACGTTGTCATTCACCATGTTTTGCTGCCTAGGGAGTCTAAATTGTGGGTTTTTTATTTTTTGTTTTGTTGCTCTGATACTTGGGTACACTTTTACACGTTGAATCTTGTTTAATGTATCATTTGTTTTGCTGTCAAACTAATTTTCATTACATCTCTGGCTGTCTAGTGAATGCTCATTTACTTGTCAAACGAATTTGAGTTTTTCTCGCGCCTTGCTATACTACACGACACGAGTGACGGATGATATTGAAGTAGACAGGGTGTTTGGAAGCACCACCAAAAAA

mRNA sequence

ATGATATTCAACTCTTCTGCTAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAATATAAGAAGGGTAAGGACAGCCTTGCTGCTCAAGGGAAACGTCGTTACGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCCGTCTTTCATAAGAAGGCCAAAACTACGAAGAAGATTGTTCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGTGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAGATGCATTAACGTTGTCATTCACCATGTTTTGCTGCCTAGGGAGTCTAAATTGTGGGTTTTTTATTTTTTGTTTTGTTGCTCTGATACTTGGGTACACTTTTACACGTTGAATCTTGTTTAATGTATCATTTGTTTTGCTGTCAAACTAATTTTCATTACATCTCTGGCTGTCTAGTGAATGCTCATTTACTTGTCAAACGAATTTGAGTTTTTCTCGCGCCTTGCTATACTACACGACACGAGTGACGGATGATATTGAAGTAGACAGGGTGTTTGGAAGCACCACCAAAAAA

Coding sequence (CDS)

ATGATATTCAACTCTTCTGCTAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAATATAAGAAGGGTAAGGACAGCCTTGCTGCTCAAGGGAAACGTCGTTACGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCCGTCTTTCATAAGAAGGCCAAAACTACGAAGAAGATTGTTCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGTGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG

Protein sequence

MIFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF

Homology

[Close]

BLAST of Cp4.1LG12g06470.1 vs. Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 211.1 bits (536), Expect = 6.4e-54
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 1


Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           AKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Cp4.1LG12g06470.1 vs. Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 201.4 bits (511), Expect = 5.1e-51
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 1


Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           AKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Cp4.1LG12g06470.1 vs. Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.2 bits (435), Expect = 3.3e-42
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 1


Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 113
           AKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 62  AKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]

BLAST of Cp4.1LG12g06470.1 vs. Swiss-Prot
Match: RL44_CRYNJ (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RPL44 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 9.6e-42
Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = 1


Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VN+PKT++TYCK K C+KHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 113
           AKTTKK+VLRL+C  CK   Q A+KRCKHFE+GGDKK +G ++
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of Cp4.1LG12g06470.1 vs. Swiss-Prot
Match: RL44_CRYNB (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RPL44 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 9.6e-42
Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = 1


Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VN+PKT++TYCK K C+KHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 113
           AKTTKK+VLRL+C  CK   Q A+KRCKHFE+GGDKK +G ++
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of Cp4.1LG12g06470.1 vs. TrEMBL
Match: A0A068V1D2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041145001 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.0e-53
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 1


Query: 2   IFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 61
           + +  +K VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ
Sbjct: 57  VLSPPSKMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 116

Query: 62  TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           TKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 117 TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 168

[Close]

BLAST of Cp4.1LG12g06470.1 vs. TrEMBL
Match: A0A061E456_THECC (Zinc-binding ribosomal family protein OS=Theobroma cacao GN=TCM_007734 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-52
Identity = 104/110 (94.55%), Postives = 107/110 (97.27%), Query Frame = 1


Query: 4   NSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 63
           +SSA  VNVPKTKKTYCKSK+C+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 61  SSSAAMVNVPKTKKTYCKSKDCRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 120

Query: 64  PVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           PVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 121 PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 170

[Close]

BLAST of Cp4.1LG12g06470.1 vs. TrEMBL
Match: G7L0P4_MEDTR (60S ribosomal protein L36a OS=Medicago truncatula GN=MTR_2g008180 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-52
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Cp4.1LG12g06470.1 vs. TrEMBL
Match: I3S6Y0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-52
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Cp4.1LG12g06470.1 vs. TrEMBL
Match: F6HF50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02090 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.5e-52
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 1


Query: 9   QVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 68
           QVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 20  QVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 79

Query: 69  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           KAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 80  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 124

[Close]

BLAST of Cp4.1LG12g06470.1 vs. TAIR10
Match: AT3G23390.1 (AT3G23390.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 201.4 bits (511), Expect = 2.9e-52
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 1


Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           AKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Cp4.1LG12g06470.1 vs. TAIR10
Match: AT4G14320.2 (AT4G14320.2 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 176.8 bits (447), Expect = 7.6e-45
Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI 102
           AKTTKKIVLRLQCQ CKH SQ  IKRCKHFEI
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

[Close]

BLAST of Cp4.1LG12g06470.1 vs. NCBI nr
Match: gi|661881757|emb|CDP14595.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 214.9 bits (546), Expect = 7.1e-53
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 1


Query: 2   IFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 61
           + +  +K VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ
Sbjct: 57  VLSPPSKMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQ 116

Query: 62  TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           TKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 117 TKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 168

[Close]

BLAST of Cp4.1LG12g06470.1 vs. NCBI nr
Match: gi|590689679|ref|XP_007043295.1| (Zinc-binding ribosomal family protein [Theobroma cacao])

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-52
Identity = 104/110 (94.55%), Postives = 107/110 (97.27%), Query Frame = 1


Query: 4   NSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 63
           +SSA  VNVPKTKKTYCKSK+C+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 61  SSSAAMVNVPKTKKTYCKSKDCRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 120

Query: 64  PVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           PVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 121 PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 170

[Close]

BLAST of Cp4.1LG12g06470.1 vs. NCBI nr
Match: gi|823159976|ref|XP_012479828.1| (PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii])

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-52
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = 1


Query: 5   SSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 64
           S+A  VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 29  SAAAMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 88

Query: 65  VFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           VFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 89  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137

[Close]

BLAST of Cp4.1LG12g06470.1 vs. NCBI nr
Match: gi|357445721|ref|XP_003593138.1| (60S ribosomal protein L36a [Medicago truncatula])

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-52
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 10  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 69
           VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 70  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Cp4.1LG12g06470.1 vs. NCBI nr
Match: gi|297737944|emb|CBI27145.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 212.6 bits (540), Expect = 3.5e-52
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 1


Query: 9   QVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 68
           QVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 5   QVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 64

Query: 69  KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 114
           KAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 65  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 109

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g06470.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL44_GOSHI	6.4e-54	98.08	60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3	[more]
RL36A_ARATH	5.1e-51	93.27	60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3	[more]
RL44_PHARH	3.3e-42	78.64	60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3	[more]
RL44_CRYNJ	9.6e-42	77.67	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
RL44_CRYNB	9.6e-42	77.67	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]

BLAST of Cp4.1LG12g06470.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A068V1D2_COFCA	5.0e-53	92.86	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041145001 PE=3 SV=1	[more]
A0A061E456_THECC	1.1e-52	94.55	Zinc-binding ribosomal family protein OS=Theobroma cacao GN=TCM_007734 PE=3 SV=1	[more]
G7L0P4_MEDTR	1.4e-52	99.04	60S ribosomal protein L36a OS=Medicago truncatula GN=MTR_2g008180 PE=2 SV=1	[more]
I3S6Y0_LOTJA	1.4e-52	99.04	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
F6HF50_VITVI	2.5e-52	98.10	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02090 PE=3 SV=...	[more]

BLAST of Cp4.1LG12g06470.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23390.1	2.9e-52	93.27	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.2	7.6e-45	92.39	Zinc-binding ribosomal protein family protein	[more]

BLAST of Cp4.1LG12g06470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|661881757\|emb\|CDP14595.1\|	7.1e-53	92.86	unnamed protein product [Coffea canephora]	[more]
gi\|590689679\|ref\|XP_007043295.1\|	1.6e-52	94.55	Zinc-binding ribosomal family protein [Theobroma cacao]	[more]
gi\|823159976\|ref\|XP_012479828.1\|	2.1e-52	95.41	PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]	[more]
gi\|357445721\|ref\|XP_003593138.1\|	2.1e-52	99.04	60S ribosomal protein L36a [Medicago truncatula]	[more]
gi\|297737944\|emb\|CBI27145.3\|	3.5e-52	98.10	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR011332	Ribosomal_zn-bd
IPR000552	Ribosomal_L44e

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG12g06470	Cp4.1LG12g06470	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG12g06470.1:cds:003	Cp4.1LG12g06470.1:cds:003	CDS
Cp4.1LG12g06470.1:cds:002	Cp4.1LG12g06470.1:cds:002	CDS
Cp4.1LG12g06470.1:cds:001	Cp4.1LG12g06470.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG12g06470.1:three_prime_utr:001	Cp4.1LG12g06470.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG12g06470.1	Cp4.1LG12g06470.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000552	Ribosomal protein L44e	PRODOM	PD002841		coord: 28..101 score: 5.0
IPR000552	Ribosomal protein L44e	GENE3D	G3DSA:3.10.450.80		coord: 10..103 score: 3.1
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 6..113 score: 2.0E
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 27..102 score: 4.1
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 71..82 scor
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 10..102 score: 1.14
None	No IPR available	PANTHER	PTHR10369:SF3	IP17351P	coord: 6..113 score: 2.0E