Cp4.1LG12g04190 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g04190
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Plastid lipid-associated protein
Location	Cp4.1LG12 : 3098459 .. 3101366 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATAGAGGATGGATGATCACATAATTTTCTCATTATGGCCAAATCCCTCTCCCTTCCATCGCGTCCCTTCAATTCCCCTTCTTCTTCCATTGGAACCCATCTCTCTCAACTCCCCAAAATCTCTTGTTCTTCCATATCCATTCAATCTCAATCACCCAGAGACCAACTCCTCGCCCTCATCTCCGACCAAGAAAGAGGTCTCAAGACCCAGAAAAGCCCTCAGAAACTTGCTTCAATTGTGAAATCGATCGACGCCTTGGCGTCTCTGGGCCGAAATTCTGTCACTACGGACGATTCACTTTCTGCGACATGGCGCCTTCTATGGACCACTGAGAAAGAGCAGCTGTTCATCATTGAGAAGGCTCACTTGTTTGGTACTCAAGCTGGGGATGTTTTGCAGGTGATTGATGTCAAGAAAAAGAGTCTTAATAATGTCATCACTTTTCCTCCAGATGGGGTTTTCTTCGTTCGATCCAGCATTGAAGTTGCTTCCTCTCAGAGAGTGAATTTTAGGTATGTTCTCTCTCCCTCTGCTTTTAATCCATACAAATGTGCCTTTAATTTCGTCTTCATAGGTCGTTTGGATGAATTGCTGTTTCAATTCAATGGTTGTATTTTAAAGCAATCAAATTAGCATATAATTTACATTTGATATTGAGTTTGAATCTGGTTGTTTAGATTTACAAGTGCTGTTCTGCGAGGAAAAAACTGGGAAATTCCTTTGCCACCATTCGGACAGGGCTGGTGAGTTAATTATCTTTATGAGTTCCCTTTTGTTCACTTTTTTTCTATATGGTTAATGTTTATATGACATGTCTGAAATATTTGATAAATCTATAAGATTGATGTTAAACTCTGAGTTCACCATGTTCTTGCTGTTCGATCAATAATAGAATCAAAAGCTAGGACAAATTATAGACTGAGACTCATCAATGACTTCAATCCCTGATACATCAAAAACTCCACCTTCTATCTCTACAAAAAGCTGATTCTCGGACAATATCATCCTTCATGTTAAAAATTCCTTCATGTCATGTGACATGGTGTAATCCATATGAATCCAAGGGGTTTGAAAAGTCATTCAAAGAGAGAATTCTATTGAAGATATGCAGTGGTTTTATAGAAATAACAACTCCGAATCTAAGAAACACATTCCATGATCTTACACAAATTTCTATTGACTTCATTACCTGCGACATTACAATCAAACATATTGTGTCTGAAAAAAATATTCATCAAACCATCAAAGTGGCTGATGACTTTAAAGTACTATTGTGAGATCCCATATCAATTGGGGAGGAGAACGAAACCTTTTTTATAAAAGAGTGGAAACCTCCCCTAGCAGACGCGTTTTAAATACCTTGAGGAAAGCTCGAAAGGGAAAGTCTAAAGAGGACAATATCTGCTAGCGGTGGGCTTAGGCCGTTACAAATGGTATCAGAGCCAGATACCAGGCGATGTACAGAGGCTGAGTCCCAAAGGGCGTGGACACGAGGGGGTGTGCAAGCAAGGAGGCCGAGCCTTGAAGGGGGGTGGACATGAGACGGTGTGCCAGCAGGGACGCTGGGCCCCGAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACAAAACATTCTTTATAAGGTGTGGAAACCTCTCCCTAGCTAGAAAATATTTGCTAGTGGTAGGCTTGGGCCGTTACAACTACGTTCCAGATCCACCTACCATATCCTAAAATGAAATTCAATGAAATTCAGACGAGTGTGCTTACCACTAGATCATTTCTCAATAAGGAAATGAAAATCACCATAGAACTTCCGTTTTCTCGTGGGATCTAAAACTATTGGGGAGTTACCATCTGAGTAAAGTATTGCAAATATTGGATTTAAAAAAGATATTGTCCGCTTTGACCCATTACGTATCAACGTCAACCTCACGGTTTTATAACGCGTCTGCTAGGGAGAGGTTTTCATACTCGTTTTGTTTCCCTCTTCTCTCCAATCAATGTGGGATCTTGCATTAATCCTCTTTCTTTCATATTGTACTTCTCTAGTTTTGATCTGACGGTATTGCCATTAGCTTGTTGAGGTTATTCCAAAATAACCAATACTACTTACCAATCTGCCTACAGCACCATTGCCTCTTTTATTCCTCCAAAGAATCACGGACATGTGAAAACTGGAGTTCGATTCTATTTATGGCATGTTGATAGATGTCTTGTAACTCTAATGCCTCCGGTTATAATAAGAGAGCTCAACGAGTTTTACTTCTATTACAGTGAATGGTATGATATTATTTACTTGCCGCTTGATTTTACTTTTGGATTTTACTAAAAATGAAATATTCGCTCTTTTACTTTTATTTTTTTTTATTTTTTATTATTATTTTGGTTCGGGCGTTCATACTTGTATCTAAACTTGAACGAAAGATAATGTCTAGATCCTACAGATAAGAGTATTAGATGTTCGGTTCTTTTCTGGACCATTTTATTTGTTATTCAATCATGAGCATAAATGTGGCATTTTGTCTTATTTTCTATAGGTTCGAGACTGTATACCTCGATGAGGATATCCGGGTTGTAAAAGATATCAGAGATGATTATTTGATTGTTGAACGTGCTCCCTACACCTGGAAAGAATGAAAAGCTAGATCACTGGTTTTCATTGCTGCTATAGAAACACAATGCAGTAAATTGTATTAGTGTTATAATCATCTAAATTGATCCCGAGTACGTCTATCCTTCTGGAATCTATGTCCTTATTATGCAACACTCATGCGGCTGCTCTCACTGTTTAAGTATTATTGTTGTAAACTTCGATTACCATTATTTGGGCTAACAATTGATAATGGTGTATAGTTAAAAGGTTCAAATATTCGTATCCAATCTTCATATTTACTGGGTGATGAAGGTAGGTA

mRNA sequence

TGATAGAGGATGGATGATCACATAATTTTCTCATTATGGCCAAATCCCTCTCCCTTCCATCGCGTCCCTTCAATTCCCCTTCTTCTTCCATTGGAACCCATCTCTCTCAACTCCCCAAAATCTCTTGTTCTTCCATATCCATTCAATCTCAATCACCCAGAGACCAACTCCTCGCCCTCATCTCCGACCAAGAAAGAGGTCTCAAGACCCAGAAAAGCCCTCAGAAACTTGCTTCAATTGTGAAATCGATCGACGCCTTGGCGTCTCTGGGCCGAAATTCTGTCACTACGGACGATTCACTTTCTGCGACATGGCGCCTTCTATGGACCACTGAGAAAGAGCAGCTGTTCATCATTGAGAAGGCTCACTTGTTTGGTACTCAAGCTGGGGATGTTTTGCAGGTGATTGATGTCAAGAAAAAGAGTCTTAATAATGTCATCACTTTTCCTCCAGATGGGGTTTTCTTCGTTCGATCCAGCATTGAAGTTGCTTCCTCTCAGAGAGTGAATTTTAGATTTACAAGTGCTGTTCTGCGAGGAAAAAACTGGGAAATTCCTTTGCCACCATTCGGACAGGGCTGATGTCTTGTAACTCTAATGCCTCCGGTTATAATAAGAGAGCTCAACGAGTTTTACTTCTATTACAGTGAATGGTTCGAGACTGTATACCTCGATGAGGATATCCGGGTTGTAAAAGATATCAGAGATGATTATTTGATTGTTGAACGTGCTCCCTACACCTGGAAAGAATGAAAAGCTAGATCACTGGTTTTCATTGCTGCTATAGAAACACAATGCAGTAAATTGTATTAGTGTTATAATCATCTAAATTGATCCCGAGTACGTCTATCCTTCTGGAATCTATGTCCTTATTATGCAACACTCATGCGGCTGCTCTCACTGTTTAAGTATTATTGTTGTAAACTTCGATTACCATTATTTGGGCTAACAATTGATAATGGTGTATAGTTAAAAGGTTCAAATATTCGTATCCAATCTTCATATTTACTGGGTGATGAAGGTAGGTA

Coding sequence (CDS)

ATGGCCAAATCCCTCTCCCTTCCATCGCGTCCCTTCAATTCCCCTTCTTCTTCCATTGGAACCCATCTCTCTCAACTCCCCAAAATCTCTTGTTCTTCCATATCCATTCAATCTCAATCACCCAGAGACCAACTCCTCGCCCTCATCTCCGACCAAGAAAGAGGTCTCAAGACCCAGAAAAGCCCTCAGAAACTTGCTTCAATTGTGAAATCGATCGACGCCTTGGCGTCTCTGGGCCGAAATTCTGTCACTACGGACGATTCACTTTCTGCGACATGGCGCCTTCTATGGACCACTGAGAAAGAGCAGCTGTTCATCATTGAGAAGGCTCACTTGTTTGGTACTCAAGCTGGGGATGTTTTGCAGGTGATTGATGTCAAGAAAAAGAGTCTTAATAATGTCATCACTTTTCCTCCAGATGGGGTTTTCTTCGTTCGATCCAGCATTGAAGTTGCTTCCTCTCAGAGAGTGAATTTTAGATTTACAAGTGCTGTTCTGCGAGGAAAAAACTGGGAAATTCCTTTGCCACCATTCGGACAGGGCTGA

Protein sequence

MAKSLSLPSRPFNSPSSSIGTHLSQLPKISCSSISIQSQSPRDQLLALISDQERGLKTQKSPQKLASIVKSIDALASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG

Homology

[Close]

BLAST of Cp4.1LG12g04190 vs. Swiss-Prot
Match: PAP11_ARATH (Probable plastid-lipid-associated protein 11 OS=Arabidopsis thaliana GN=PAP11 PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-57
Identity = 109/154 (70.78%), Postives = 131/154 (85.06%), Query Frame = 1


Query: 28  KISCSSISIQSQSPRDQLLALISDQERGLKTQKSPQKLASIVKSIDALASLGRNSVTTDD 87
           + SCS  +  +Q  + +LL LIS+++RGL+TQK P+K   IV +I+++  +GR+S+TTDD
Sbjct: 23  RTSCSIFANPAQRAKRKLLELISEEDRGLRTQKDPKKRDEIVNAIESMTVIGRSSITTDD 82

Query: 88  SLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVITFPPDGVFFVRS 147
           SLSATWRLLWTTEKEQLFIIEKA LFGT AGDVLQVIDV K+ LNNVITFPPDGVFFVRS
Sbjct: 83  SLSATWRLLWTTEKEQLFIIEKAGLFGTTAGDVLQVIDVNKRILNNVITFPPDGVFFVRS 142

Query: 148 SIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 182
            I++AS QRVNFRF SAVLRGKNWE+PLPPFG+G
Sbjct: 143 DIDIASPQRVNFRFNSAVLRGKNWELPLPPFGKG 176

[Close]

BLAST of Cp4.1LG12g04190 vs. TrEMBL
Match: A0A0A0KDV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108600 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.3e-81
Identity = 163/181 (90.06%), Postives = 170/181 (93.92%), Query Frame = 1


Query: 1   MAKSLSLPSRPFNSPSSSIGTHLSQLPKISCSSISIQSQSPRDQLLALISDQERGLKTQK 60
           MAKSLSLPS PF  PSS I +HLS LPKISCSSIS QSQS + QLL LISDQ+RGLKTQK
Sbjct: 1   MAKSLSLPSLPFIFPSS-ITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQK 60

Query: 61  SPQKLASIVKSIDALASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
           +PQKLASIVKSID LASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGT+AGDV
Sbjct: 61  NPQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDV 120

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDV+KKSLNNVITFPPDGVFFVRS+IEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ
Sbjct: 121 LQVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180

Query: 181 G 182
           G
Sbjct: 181 G 180

[Close]

BLAST of Cp4.1LG12g04190 vs. TrEMBL
Match: A0A067JY60_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14583 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 4.1e-65
Identity = 133/177 (75.14%), Postives = 151/177 (85.31%), Query Frame = 1


Query: 5   LSLPSRPFNSPSSSIGTHLSQLPKISCSSISIQSQSPRDQLLALISDQERGLKTQKSPQK 64
           LS+P +P NSP       L    KISCSS + QSQS +  LL LISDQ+RGLKTQK P+K
Sbjct: 8   LSVPLKPQNSPKYICFKTL----KISCSSATTQSQSAKRHLLTLISDQDRGLKTQKDPEK 67

Query: 65  LASIVKSIDALASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVI 124
            A+I+++IDA+A  G+ +VTT +SLSATWRLLWTTEKEQLFIIEKA LFGTQAGDVLQVI
Sbjct: 68  RATIIQAIDAIAETGKGTVTTGNSLSATWRLLWTTEKEQLFIIEKAPLFGTQAGDVLQVI 127

Query: 125 DVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 182
           DV+KK+LNNVITFPPDGVFFVRS+IE+ASSQRVNFRFTSAVLRGKNWEIPLPPFGQG
Sbjct: 128 DVEKKTLNNVITFPPDGVFFVRSNIEIASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 180

[Close]

BLAST of Cp4.1LG12g04190 vs. TrEMBL
Match: A0A0D2QGF8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G175700 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.9e-65
Identity = 128/155 (82.58%), Postives = 139/155 (89.68%), Query Frame = 1


Query: 27  PKISCSSISIQSQSPRDQLLALISDQERGLKTQKSPQKLASIVKSIDALASLGRNSVTTD 86
           PKI+CSS++ QSQS +  LL LISDQERGLKTQ    K  SI+KSIDA+A LGRN+VTT 
Sbjct: 30  PKITCSSLTTQSQSAKQHLLNLISDQERGLKTQNDTNKRDSIIKSIDAMAVLGRNTVTTG 89

Query: 87  DSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVITFPPDGVFFVR 146
           DSLSATWRLLWTTEKEQLFIIEKA+LFGTQAGDVLQVIDV  K+LNNVITFPPDGVFFVR
Sbjct: 90  DSLSATWRLLWTTEKEQLFIIEKAYLFGTQAGDVLQVIDVDNKTLNNVITFPPDGVFFVR 149

Query: 147 SSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 182
           SSIE+ASSQRVNF+FTSAVLRGKNWE PLPPFGQG
Sbjct: 150 SSIEIASSQRVNFKFTSAVLRGKNWEFPLPPFGQG 184

[Close]

BLAST of Cp4.1LG12g04190 vs. TrEMBL
Match: A0A0D2PR91_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G175700 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.9e-65
Identity = 128/155 (82.58%), Postives = 139/155 (89.68%), Query Frame = 1


Query: 27  PKISCSSISIQSQSPRDQLLALISDQERGLKTQKSPQKLASIVKSIDALASLGRNSVTTD 86
           PKI+CSS++ QSQS +  LL LISDQERGLKTQ    K  SI+KSIDA+A LGRN+VTT 
Sbjct: 30  PKITCSSLTTQSQSAKQHLLNLISDQERGLKTQNDTNKRDSIIKSIDAMAVLGRNTVTTG 89

Query: 87  DSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVITFPPDGVFFVR 146
           DSLSATWRLLWTTEKEQLFIIEKA+LFGTQAGDVLQVIDV  K+LNNVITFPPDGVFFVR
Sbjct: 90  DSLSATWRLLWTTEKEQLFIIEKAYLFGTQAGDVLQVIDVDNKTLNNVITFPPDGVFFVR 149

Query: 147 SSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 182
           SSIE+ASSQRVNF+FTSAVLRGKNWE PLPPFGQG
Sbjct: 150 SSIEIASSQRVNFKFTSAVLRGKNWEFPLPPFGQG 184

[Close]

BLAST of Cp4.1LG12g04190 vs. TrEMBL
Match: A0A0D2LR02_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G175700 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.9e-65
Identity = 128/155 (82.58%), Postives = 139/155 (89.68%), Query Frame = 1


Query: 27  PKISCSSISIQSQSPRDQLLALISDQERGLKTQKSPQKLASIVKSIDALASLGRNSVTTD 86
           PKI+CSS++ QSQS +  LL LISDQERGLKTQ    K  SI+KSIDA+A LGRN+VTT 
Sbjct: 30  PKITCSSLTTQSQSAKQHLLNLISDQERGLKTQNDTNKRDSIIKSIDAMAVLGRNTVTTG 89

Query: 87  DSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVITFPPDGVFFVR 146
           DSLSATWRLLWTTEKEQLFIIEKA+LFGTQAGDVLQVIDV  K+LNNVITFPPDGVFFVR
Sbjct: 90  DSLSATWRLLWTTEKEQLFIIEKAYLFGTQAGDVLQVIDVDNKTLNNVITFPPDGVFFVR 149

Query: 147 SSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 182
           SSIE+ASSQRVNF+FTSAVLRGKNWE PLPPFGQG
Sbjct: 150 SSIEIASSQRVNFKFTSAVLRGKNWEFPLPPFGQG 184

[Close]

BLAST of Cp4.1LG12g04190 vs. TAIR10
Match: AT4G00030.1 (AT4G00030.1 Plastid-lipid associated protein PAP / fibrillin family protein)

HSP 1 Score: 224.2 bits (570), Expect = 6.6e-59
Identity = 109/154 (70.78%), Postives = 131/154 (85.06%), Query Frame = 1


Query: 28  KISCSSISIQSQSPRDQLLALISDQERGLKTQKSPQKLASIVKSIDALASLGRNSVTTDD 87
           + SCS  +  +Q  + +LL LIS+++RGL+TQK P+K   IV +I+++  +GR+S+TTDD
Sbjct: 23  RTSCSIFANPAQRAKRKLLELISEEDRGLRTQKDPKKRDEIVNAIESMTVIGRSSITTDD 82

Query: 88  SLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVITFPPDGVFFVRS 147
           SLSATWRLLWTTEKEQLFIIEKA LFGT AGDVLQVIDV K+ LNNVITFPPDGVFFVRS
Sbjct: 83  SLSATWRLLWTTEKEQLFIIEKAGLFGTTAGDVLQVIDVNKRILNNVITFPPDGVFFVRS 142

Query: 148 SIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 182
            I++AS QRVNFRF SAVLRGKNWE+PLPPFG+G
Sbjct: 143 DIDIASPQRVNFRFNSAVLRGKNWELPLPPFGKG 176

[Close]

BLAST of Cp4.1LG12g04190 vs. NCBI nr
Match: gi|659116544|ref|XP_008458126.1| (PREDICTED: probable plastid-lipid-associated protein 11 [Cucumis melo])

HSP 1 Score: 317.0 bits (811), Expect = 2.1e-83
Identity = 168/181 (92.82%), Postives = 172/181 (95.03%), Query Frame = 1


Query: 1   MAKSLSLPSRPFNSPSSSIGTHLSQLPKISCSSISIQSQSPRDQLLALISDQERGLKTQK 60
           MAKSLSLPS PF SPSS I THLS LPKISCSSISIQSQS + QLL LISDQERGLKTQK
Sbjct: 1   MAKSLSLPSLPFISPSS-ITTHLSHLPKISCSSISIQSQSAKHQLLTLISDQERGLKTQK 60

Query: 61  SPQKLASIVKSIDALASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
           +PQKLASIVKSID LASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV
Sbjct: 61  NPQKLASIVKSIDDLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDV+KKSLNNVITFPPDGVFFVRS+IEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ
Sbjct: 121 LQVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180

Query: 181 G 182
           G
Sbjct: 181 G 180

[Close]

BLAST of Cp4.1LG12g04190 vs. NCBI nr
Match: gi|449445459|ref|XP_004140490.1| (PREDICTED: probable plastid-lipid-associated protein 11 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 7.6e-81
Identity = 163/181 (90.06%), Postives = 170/181 (93.92%), Query Frame = 1


Query: 1   MAKSLSLPSRPFNSPSSSIGTHLSQLPKISCSSISIQSQSPRDQLLALISDQERGLKTQK 60
           MAKSLSLPS PF  PSS I +HLS LPKISCSSIS QSQS + QLL LISDQ+RGLKTQK
Sbjct: 1   MAKSLSLPSLPFIFPSS-ITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQK 60

Query: 61  SPQKLASIVKSIDALASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
           +PQKLASIVKSID LASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGT+AGDV
Sbjct: 61  NPQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDV 120

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDV+KKSLNNVITFPPDGVFFVRS+IEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ
Sbjct: 121 LQVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180

Query: 181 G 182
           G
Sbjct: 181 G 180

[Close]

BLAST of Cp4.1LG12g04190 vs. NCBI nr
Match: gi|643717186|gb|KDP28812.1| (hypothetical protein JCGZ_14583 [Jatropha curcas])

HSP 1 Score: 255.8 bits (652), Expect = 5.8e-65
Identity = 133/177 (75.14%), Postives = 151/177 (85.31%), Query Frame = 1


Query: 5   LSLPSRPFNSPSSSIGTHLSQLPKISCSSISIQSQSPRDQLLALISDQERGLKTQKSPQK 64
           LS+P +P NSP       L    KISCSS + QSQS +  LL LISDQ+RGLKTQK P+K
Sbjct: 8   LSVPLKPQNSPKYICFKTL----KISCSSATTQSQSAKRHLLTLISDQDRGLKTQKDPEK 67

Query: 65  LASIVKSIDALASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVI 124
            A+I+++IDA+A  G+ +VTT +SLSATWRLLWTTEKEQLFIIEKA LFGTQAGDVLQVI
Sbjct: 68  RATIIQAIDAIAETGKGTVTTGNSLSATWRLLWTTEKEQLFIIEKAPLFGTQAGDVLQVI 127

Query: 125 DVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 182
           DV+KK+LNNVITFPPDGVFFVRS+IE+ASSQRVNFRFTSAVLRGKNWEIPLPPFGQG
Sbjct: 128 DVEKKTLNNVITFPPDGVFFVRSNIEIASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 180

[Close]

BLAST of Cp4.1LG12g04190 vs. NCBI nr
Match: gi|802700207|ref|XP_012083641.1| (PREDICTED: probable plastid-lipid-associated protein 11 isoform X1 [Jatropha curcas])

HSP 1 Score: 255.8 bits (652), Expect = 5.8e-65
Identity = 133/177 (75.14%), Postives = 151/177 (85.31%), Query Frame = 1


Query: 5   LSLPSRPFNSPSSSIGTHLSQLPKISCSSISIQSQSPRDQLLALISDQERGLKTQKSPQK 64
           LS+P +P NSP       L    KISCSS + QSQS +  LL LISDQ+RGLKTQK P+K
Sbjct: 12  LSVPLKPQNSPKYICFKTL----KISCSSATTQSQSAKRHLLTLISDQDRGLKTQKDPEK 71

Query: 65  LASIVKSIDALASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVI 124
            A+I+++IDA+A  G+ +VTT +SLSATWRLLWTTEKEQLFIIEKA LFGTQAGDVLQVI
Sbjct: 72  RATIIQAIDAIAETGKGTVTTGNSLSATWRLLWTTEKEQLFIIEKAPLFGTQAGDVLQVI 131

Query: 125 DVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 182
           DV+KK+LNNVITFPPDGVFFVRS+IE+ASSQRVNFRFTSAVLRGKNWEIPLPPFGQG
Sbjct: 132 DVEKKTLNNVITFPPDGVFFVRSNIEIASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 184

[Close]

BLAST of Cp4.1LG12g04190 vs. NCBI nr
Match: gi|802700213|ref|XP_012083642.1| (PREDICTED: probable plastid-lipid-associated protein 11 isoform X2 [Jatropha curcas])

HSP 1 Score: 255.8 bits (652), Expect = 5.8e-65
Identity = 133/177 (75.14%), Postives = 151/177 (85.31%), Query Frame = 1


Query: 5   LSLPSRPFNSPSSSIGTHLSQLPKISCSSISIQSQSPRDQLLALISDQERGLKTQKSPQK 64
           LS+P +P NSP       L    KISCSS + QSQS +  LL LISDQ+RGLKTQK P+K
Sbjct: 12  LSVPLKPQNSPKYICFKTL----KISCSSATTQSQSAKRHLLTLISDQDRGLKTQKDPEK 71

Query: 65  LASIVKSIDALASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVI 124
            A+I+++IDA+A  G+ +VTT +SLSATWRLLWTTEKEQLFIIEKA LFGTQAGDVLQVI
Sbjct: 72  RATIIQAIDAIAETGKGTVTTGNSLSATWRLLWTTEKEQLFIIEKAPLFGTQAGDVLQVI 131

Query: 125 DVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 182
           DV+KK+LNNVITFPPDGVFFVRS+IE+ASSQRVNFRFTSAVLRGKNWEIPLPPFGQG
Sbjct: 132 DVEKKTLNNVITFPPDGVFFVRSNIEIASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 184

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g04190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PAP11_ARATH	1.2e-57	70.78	Probable plastid-lipid-associated protein 11 OS=Arabidopsis thaliana GN=PAP11 PE...	[more]

BLAST of Cp4.1LG12g04190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDV9_CUCSA	5.3e-81	90.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108600 PE=4 SV=1	[more]
A0A067JY60_JATCU	4.1e-65	75.14	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14583 PE=4 SV=1	[more]
A0A0D2QGF8_GOSRA	6.9e-65	82.58	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G175700 PE=4 SV=1	[more]
A0A0D2PR91_GOSRA	6.9e-65	82.58	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G175700 PE=4 SV=1	[more]
A0A0D2LR02_GOSRA	6.9e-65	82.58	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G175700 PE=4 SV=1	[more]

BLAST of Cp4.1LG12g04190 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00030.1	6.6e-59	70.78	Plastid-lipid associated protein PAP / fibrillin family protein	[more]

BLAST of Cp4.1LG12g04190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116544\|ref\|XP_008458126.1\|	2.1e-83	92.82	PREDICTED: probable plastid-lipid-associated protein 11 [Cucumis melo]	[more]
gi\|449445459\|ref\|XP_004140490.1\|	7.6e-81	90.06	PREDICTED: probable plastid-lipid-associated protein 11 [Cucumis sativus]	[more]
gi\|643717186\|gb\|KDP28812.1\|	5.8e-65	75.14	hypothetical protein JCGZ_14583 [Jatropha curcas]	[more]
gi\|802700207\|ref\|XP_012083641.1\|	5.8e-65	75.14	PREDICTED: probable plastid-lipid-associated protein 11 isoform X1 [Jatropha cur...	[more]
gi\|802700213\|ref\|XP_012083642.1\|	5.8e-65	75.14	PREDICTED: probable plastid-lipid-associated protein 11 isoform X2 [Jatropha cur...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006843	PAP/fibrillin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g04190.1	Cp4.1LG12g04190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006843	Plastid lipid-associated protein/fibrillin conserved domain	PFAM	PF04755	PAP_fibrillin	coord: 43..168 score: 1.9
None	No IPR available	PANTHER	PTHR31906	FAMILY NOT NAMED	coord: 1..181 score: 2.1
None	No IPR available	PANTHER	PTHR31906:SF3	SUBFAMILY NOT NAMED	coord: 1..181 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG12g04190	Cucsa.120630	Cucumber (Gy14) v1	cgycpeB0286
Cp4.1LG12g04190	CmaCh17G004870	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g04190	CmoCh17G004590	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g04190	Cla006670	Watermelon (97103) v1	cpewmB155
Cp4.1LG12g04190	Csa6G108600	Cucumber (Chinese Long) v2	cpecuB152
Cp4.1LG12g04190	MELO3C021141	Melon (DHL92) v3.5.1	cpemeB112
Cp4.1LG12g04190	ClCG06G003000	Watermelon (Charleston Gray)	cpewcgB144
Cp4.1LG12g04190	CSPI06G08750	Wild cucumber (PI 183967)	cpecpiB154
Cp4.1LG12g04190	Lsi09G016310	Bottle gourd (USVL1VR-Ls)	cpelsiB101
Cp4.1LG12g04190	MELO3C021141.2	Melon (DHL92) v3.6.1	cpemedB138
Cp4.1LG12g04190	CsaV3_6G009120	Cucumber (Chinese Long) v3	cpecucB0176
Cp4.1LG12g04190	Bhi12G001914	Wax gourd	cpewgoB0174
Cp4.1LG12g04190	CsGy6G008850	Cucumber (Gy14) v2	cgybcpeB732
Cp4.1LG12g04190	Carg26712	Silver-seed gourd	carcpeB0793

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG12g04190	Cucurbita pepo (Zucchini)	cpecpeB159
Cp4.1LG12g04190	Cucurbita maxima (Rimu)	cmacpeB904
Cp4.1LG12g04190	Cucurbita moschata (Rifu)	cmocpeB840
Cp4.1LG12g04190	Silver-seed gourd	carcpeB0850