Carg26712 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26712
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Plastid lipid-associated protein
Location	Cucurbita_argyrosperma_scaffold_280 : 176209 .. 178825 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAATCCCTCTCTCTTCCATCGCGTCCCTTCAATTCCCCTTCTTCTTCCATTGGAACCCGTCGCTCTCAACTCCCCAAAATCTCTTGTTCTTCCATATCCATTCAATCTCAATCACCCAAAGACCAACTCCTCGCCCTAATCTCCGACCAAGAAAGAGGTCTCAAGACCCAGAAAAGCCCTCAGAAACTTGCTTCAATTGTGAAATCAATCGACGCCTTGGCGTCTCTTGCTCGAAATTCTGTCACAACGGACGATTCACTTTCTGCGACATGGCGTCTTCTATGGACCACTGAGAAAGAGCAGCTGTTCATCATTGAGAAGGCTCACTTGTTTGGTACTCAAGCTGGGGATGTTTTGCAGGTGATTGATGTCAAGAAAAAGAGTCTTAATAATGTCATCACTTTTCCTCCAGATGGGGTTTTCTTCGTTCGATCCAGCATTGAAGTTGCTTCCTCTCAGAGAGTGAATTTTAGGTATGTTCTCTCTGCCTCTGCTTTTAATCCATACCAATGTGCCTTTAATTTAGTCTTCATAGATGAATTGCTGTTTCAATTCAATGGTTGTATTTTAAAGCAATCAAATTAGCATATAATGTACATTTGATTTGATATTGAGTTTGAATCTGGTTGTTTAGATTTACAAGTGCTGTTCTGCGAGGAAAAAACTGGGAAATTCCTTTGCCACCATTCGGACAGGGCTGGTGAGTTAATTATCTTTATGAGTTCCCTTTTGTTCACTTTTTTTATATATGGTTAATGTTTATATGCCATGTCTGAAATATTTGATATTAAACTCTGAGTTCACCATGTTCTTGCCGTAACCATTGATTTTGTTGGATCAATACTAGAATCAAAAGCTAGGACAAATTATAGACTGAGACTCATCAATGACTTCAATCCTTGATACATCAAAAACTCCACCTTCTGTCTCTACAAAAAGCTGATTCTCGGACAATATCATCCTTCATGTTAAAAGTCATTCAAAGAGAGAATTCTATTGAAGATATGAATCCAAGGGGTGTAATCAATATGAATCAATATGAATCCAAGGGGTTTGAAAAGTCATTCAAAGAGAGAATTCTATTGATGATACGCTGTGGTTTTATAGAAATAACAACACATTCCATGATCTTACACAAATTCCTATTGACTTCATTACATGCTACATTACAATCAAACATATTATGTGTCTGAAAAAAATATTAATCAAACCATCAAAGGGGCTGATAACTTCAAAGTACTATTGTGGGATCCCACATCGGTTGGGGAGGAGAACGAAATCTTCTTTATAAAGGAGTAGAAACCTCTCCCTAGCAAACGCGTTTTAAAAACCTTAAGGAGAAGCTCGAAAGAGAAAGTCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCTGCTACAAATGGTATTAGAGCTAGATACCAAGCGAGTGGGATCTCGCATTAATCCTCTTTCTTTTATATTGTACTTCTTTGTTTCTGATCTGACGGTACCGACATTAGCTTGTTGAGGTTATTCCAAAAGAACCAATACTACTTACCAAGCAGCCTACAGCACCATTGCCTCTTTTGTTCCTCCAAAGAATCATGGACATGGGAAAACGGGAGTTCGATTCTATTTACGGCATGTTGATAGATGTCTTGTCCTCTAATGCCTCCAGTTAGAATAAGAGAGCTCAACGACTTCTACTTCTATTACAGTGAATGGTATGATATTATTTACTTGCACCCAATCGCTTGATTTTACTTTTGGATTTTACTAAAAATGAAATATTCTCTTTTTTTTTTTTTTTTTTTTGGGTCCATTCTAACTTAAATGTTCATGTCCACATCTCGCAACATGTAATGGTTTGGGCGTTCATACTTGTATCTAAACTTGAATGAAAGATAATGTCTAGATCTTACAGATAAGAGTATTAGATGTTCGGTTCTGGACCATTTTATTTGTTGTTCAATCATGAGCATAAATGTGGCAGTTTGTCTTATTTTCTATAGGTTCGAGACGGTATACCTCGATGATGATATCCGGGTTGTAAAAGATATCCGAGATGATTATTTGATCGTTGAACGTGCTCCCTACACTTGGAAAGAATGAAAAGCTAGATCACTGGTTTTCACTGCTGCTATAGAAACACGATGCAGTAGATTGTATTAGTGTTAGTCTTCTAAATTGATCCCCAGTACGTCTATCCTTCTGGATTCTGTGTCATTATTCAACACTCAGTGCTGCTGCGCTCACTGTTTAGGTATTATTGTTGTAAACCTTGATTACCATTATTTGGGCTAACAATTGATAATGGGGTAATATTCATGTCAAAAGTTAAAAGGTTCAAATGTTCGTATCCAAGCTTCATATTTACGGGTTGATAAATATATGTAGGCACAGGTATCCATTCATCTGTAGTCCATCCAAATGTTTGAAGTCCATCCAAATGTTTTTAGTATAATATCCGTGAGATTCCACATCTGTGAGGGGAAGCTCGAAAGGAAAATTCTGAAGAGGATTATCTACTAGCGGTGAGTTTGGATCGTAACAAATGGTGGGCTTGGGTTATTACAATATTATTTCATAAAAATATCTATATCGGTATGTGAAATCTTGATTTTTTTT

mRNA sequence

ATGGCCAAATCCCTCTCTCTTCCATCGCGTCCCTTCAATTCCCCTTCTTCTTCCATTGGAACCCGTCGCTCTCAACTCCCCAAAATCTCTTGTTCTTCCATATCCATTCAATCTCAATCACCCAAAGACCAACTCCTCGCCCTAATCTCCGACCAAGAAAGAGGTCTCAAGACCCAGAAAAGCCCTCAGAAACTTGCTTCAATTGTGAAATCAATCGACGCCTTGGCGTCTCTTGCTCGAAATTCTGTCACAACGGACGATTCACTTTCTGCGACATGGCGTCTTCTATGGACCACTGAGAAAGAGCAGCTGTTCATCATTGAGAAGGCTCACTTGTTTGGTACTCAAGCTGGGGATGTTTTGCAGGTGATTGATGTCAAGAAAAAGAGTCTTAATAATGTCATCACTTTTCCTCCAGATGGGGTTTTCTTCGTTCGATCCAGCATTGAAGTTGCTTCCTCTCAGAGAGTGAATTTTAGATTTACAAGTGCTGTTCTGCGAGGAAAAAACTGGGAAATTCCTTTGCCACCATTCGGACAGGGCTGCTTGTTGAGGTTATTCCAAAAGAACCAATACTACTTACCAAGCAGCCTACAGCACCATTGCCTCTTTTGTTCCTCCAAAGAATCATGGACATGGGAAAACGGGAGTTCGATTCTATTTACGGCATGTTGATAGATGTCTTGTCCTCTAATGCCTCCAGTTAGAATAAGAGAGCTCAACGACTTCTACTTCTATTACAGTGAATGGTTCGAGACGGTATACCTCGATGATGATATCCGGGTTGTAAAAGATATCCGAGATGATTATTTGATCGTTGAACGTGCTCCCTACACTTGGAAAGAATGAAAAGCTAGATCACTGGTTTTCACTGCTGCTATAGAAACACGATGCAGTAGATTGTATTAGTGTTAGTCTTCTAAATTGATCCCCAGTACGTCTATCCTTCTGGATTCTGTGTCATTATTCAACACTCAGTGCTGCTGCGCTCACTGTTTAGGTATTATTGTTGTAAACCTTGATTACCATTATTTGGGCTAACAATTGATAATGGGGTAATATTCATGTCAAAAGTTAAAAGGTTCAAATGTTCGTATCCAAGCTTCATATTTACGGGTTGATAAATATATGTAGGCACAGGTATCCATTCATCTGTAGTCCATCCAAATGTTTGAAGTCCATCCAAATGTTTTTAGTATAATATCCGTGAGATTCCACATCTGTGAGGGGAAGCTCGAAAGGAAAATTCTGAAGAGGATTATCTACTAGCGGTGAGTTTGGATCGTAACAAATGGTGGGCTTGGGTTATTACAATATTATTTCATAAAAATATCTATATCGGTATGTGAAATCTTGATTTTTTTT

Coding sequence (CDS)

ATGGCCAAATCCCTCTCTCTTCCATCGCGTCCCTTCAATTCCCCTTCTTCTTCCATTGGAACCCGTCGCTCTCAACTCCCCAAAATCTCTTGTTCTTCCATATCCATTCAATCTCAATCACCCAAAGACCAACTCCTCGCCCTAATCTCCGACCAAGAAAGAGGTCTCAAGACCCAGAAAAGCCCTCAGAAACTTGCTTCAATTGTGAAATCAATCGACGCCTTGGCGTCTCTTGCTCGAAATTCTGTCACAACGGACGATTCACTTTCTGCGACATGGCGTCTTCTATGGACCACTGAGAAAGAGCAGCTGTTCATCATTGAGAAGGCTCACTTGTTTGGTACTCAAGCTGGGGATGTTTTGCAGGTGATTGATGTCAAGAAAAAGAGTCTTAATAATGTCATCACTTTTCCTCCAGATGGGGTTTTCTTCGTTCGATCCAGCATTGAAGTTGCTTCCTCTCAGAGAGTGAATTTTAGATTTACAAGTGCTGTTCTGCGAGGAAAAAACTGGGAAATTCCTTTGCCACCATTCGGACAGGGCTGCTTGTTGAGGTTATTCCAAAAGAACCAATACTACTTACCAAGCAGCCTACAGCACCATTGCCTCTTTTGTTCCTCCAAAGAATCATGGACATGGGAAAACGGGAGTTCGATTCTATTTACGGCATGTTGA

Protein sequence

MAKSLSLPSRPFNSPSSSIGTRRSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQKSPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGCLLRLFQKNQYYLPSSLQHHCLFCSSKESWTWENGSSILFTAC

Homology

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BLAST of Carg26712 vs. NCBI nr
Match: XP_022974289.1 (probable plastid-lipid-associated protein 11, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 408.7 bits (1049), Expect = 1.3e-110
Identity = 215/224 (95.98%), Postives = 215/224 (95.98%), Query Frame = 0


Query: 1   MAKSLSLPSRPFNSPSSSIGTRRSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60
           MAKSLSLPSRPFNSPSSSIGT  SQ PKISCSSISIQSQSPKDQLLALISDQERGLKTQK
Sbjct: 1   MAKSLSLPSRPFNSPSSSIGTHLSQPPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60

Query: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
           SPQKLASIVKSIDALASLA NSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV
Sbjct: 61  SPQKLASIVKSIDALASLAPNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ
Sbjct: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180

Query: 181 GCLLRLFQKNQYYLPSSLQHHCLFCSSKESWTWENGSSILFTAC 225
           GCLLRLFQKNQYYLPSS QHHCLF SSKES T EN SSILFTAC
Sbjct: 181 GCLLRLFQKNQYYLPSSPQHHCLFYSSKESRTCENWSSILFTAC 224

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BLAST of Carg26712 vs. NCBI nr
Match: XP_023006655.1 (probable plastid-lipid-associated protein 11, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 406.0 bits (1042), Expect = 8.4e-110
Identity = 214/224 (95.54%), Postives = 214/224 (95.54%), Query Frame = 0


Query: 1   MAKSLSLPSRPFNSPSSSIGTRRSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60
           MAKSLSLPSRPFNSPSSSIGT  SQ PKISCSSISIQSQSPKDQLLALISDQERGLKTQK
Sbjct: 1   MAKSLSLPSRPFNSPSSSIGTHLSQPPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60

Query: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
           SPQKLASIVKSIDALASLA NSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV
Sbjct: 61  SPQKLASIVKSIDALASLAPNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ
Sbjct: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180

Query: 181 GCLLRLFQKNQYYLPSSLQHHCLFCSSKESWTWENGSSILFTAC 225
           GCLLRLFQKNQYYLPSS QHHCLF SSKES T EN SSI FTAC
Sbjct: 181 GCLLRLFQKNQYYLPSSPQHHCLFYSSKESRTCENWSSIPFTAC 224

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BLAST of Carg26712 vs. NCBI nr
Match: XP_022959113.1 (probable plastid-lipid-associated protein 11, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 342.8 bits (878), Expect = 8.7e-91
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MAKSLSLPSRPFNSPSSSIGTRRSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60
           MAKSLSLPSRPFNSPSSSIGTR SQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK
Sbjct: 1   MAKSLSLPSRPFNSPSSSIGTRLSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60

Query: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
           SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV
Sbjct: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ
Sbjct: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180

Query: 181 G 182
           G
Sbjct: 181 G 181

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BLAST of Carg26712 vs. NCBI nr
Match: XP_023547718.1 (probable plastid-lipid-associated protein 11, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342.8 bits (878), Expect = 8.7e-91
Identity = 179/187 (95.72%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 1   MAKSLSLPSRPFNSPSSSIGTRRSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60
           MAKSLSLPSRPFNSPSSSIGT  SQLPKISCSSISIQSQSP+DQLLALISDQERGLKTQK
Sbjct: 1   MAKSLSLPSRPFNSPSSSIGTHLSQLPKISCSSISIQSQSPRDQLLALISDQERGLKTQK 60

Query: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
           SPQKLASIVKSIDALASL RNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV
Sbjct: 61  SPQKLASIVKSIDALASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ
Sbjct: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180

Query: 181 GCLLRLF 188
           GC +  F
Sbjct: 181 GCTIASF 187

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BLAST of Carg26712 vs. NCBI nr
Match: XP_022959112.1 (probable plastid-lipid-associated protein 11, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 342.4 bits (877), Expect = 1.1e-90
Identity = 183/214 (85.51%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 1   MAKSLSLPSRPFNSPSSSIGTRRSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60
           MAKSLSLPSRPFNSPSSSIGTR SQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK
Sbjct: 1   MAKSLSLPSRPFNSPSSSIGTRLSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60

Query: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
           SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV
Sbjct: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ
Sbjct: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180

Query: 181 GCLLRLFQKNQYYLPSSLQHHCLFCSSKESWTWE 215
           G    ++  +   +   ++   L    +  +TW+
Sbjct: 181 GWFETVYLDDDIRVVKDIRDDYLIV-ERAPYTWK 213

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BLAST of Carg26712 vs. TAIR10
Match: AT4G00030.1 (Plastid-lipid associated protein PAP / fibrillin family protein)

HSP 1 Score: 221.1 bits (562), Expect = 6.9e-58
Identity = 121/213 (56.81%), Postives = 152/213 (71.36%), Query Frame = 0


Query: 1   MAKSLSLPSRPFNSPSSSIGTRRSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60
           +A SLS  S P         TRR+   + SCS  +  +Q  K +LL LIS+++RGL+TQK
Sbjct: 3   LALSLSACSPPLRR------TRRAGF-RTSCSIFANPAQRAKRKLLELISEEDRGLRTQK 62

Query: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
            P+K   IV +I+++  + R+S+TTDDSLSATWRLLWTTEKEQLFIIEKA LFGT AGDV
Sbjct: 63  DPKKRDEIVNAIESMTVIGRSSITTDDSLSATWRLLWTTEKEQLFIIEKAGLFGTTAGDV 122

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDV K+ LNNVITFPPDGVFFVRS I++AS QRVNFRF SAVLRGKNWE+PLPPFG+
Sbjct: 123 LQVIDVNKRILNNVITFPPDGVFFVRSDIDIASPQRVNFRFNSAVLRGKNWELPLPPFGK 182

Query: 181 GCLLRLFQKNQYYLPSSLQHHCLFCS-SKESWT 213
           G    ++   +  +   ++   L    +  +WT
Sbjct: 183 GWFENVYMDGEIRVAKDIRGDYLIVDRAPYNWT 208

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BLAST of Carg26712 vs. Swiss-Prot
Match: sp|O81304|PAP11_ARATH (Probable plastid-lipid-associated protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP11 PE=2 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.3e-56
Identity = 121/213 (56.81%), Postives = 152/213 (71.36%), Query Frame = 0


Query: 1   MAKSLSLPSRPFNSPSSSIGTRRSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60
           +A SLS  S P         TRR+   + SCS  +  +Q  K +LL LIS+++RGL+TQK
Sbjct: 3   LALSLSACSPPLRR------TRRAGF-RTSCSIFANPAQRAKRKLLELISEEDRGLRTQK 62

Query: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
            P+K   IV +I+++  + R+S+TTDDSLSATWRLLWTTEKEQLFIIEKA LFGT AGDV
Sbjct: 63  DPKKRDEIVNAIESMTVIGRSSITTDDSLSATWRLLWTTEKEQLFIIEKAGLFGTTAGDV 122

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDV K+ LNNVITFPPDGVFFVRS I++AS QRVNFRF SAVLRGKNWE+PLPPFG+
Sbjct: 123 LQVIDVNKRILNNVITFPPDGVFFVRSDIDIASPQRVNFRFNSAVLRGKNWELPLPPFGK 182

Query: 181 GCLLRLFQKNQYYLPSSLQHHCLFCS-SKESWT 213
           G    ++   +  +   ++   L    +  +WT
Sbjct: 183 GWFENVYMDGEIRVAKDIRGDYLIVDRAPYNWT 208

[Close]

BLAST of Carg26712 vs. TrEMBL
Match: tr|A0A1S4E2N2|A0A1S4E2N2_CUCME (probable plastid-lipid-associated protein 11 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497655 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 2.9e-82
Identity = 168/185 (90.81%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 1   MAKSLSLPSRPFNSPSSSIGTRRSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60
           MAKSLSLPS PF SP SSI T  S LPKISCSSISIQSQS K QLL LISDQERGLKTQK
Sbjct: 1   MAKSLSLPSLPFISP-SSITTHLSHLPKISCSSISIQSQSAKHQLLTLISDQERGLKTQK 60

Query: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
           +PQKLASIVKSID LASL RNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV
Sbjct: 61  NPQKLASIVKSIDDLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDV+KKSLNNVITFPPDGVFFVRS+IEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ
Sbjct: 121 LQVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180

Query: 181 GCLLR 186
           GC+ R
Sbjct: 181 GCIPR 184

[Close]

BLAST of Carg26712 vs. TrEMBL
Match: tr|A0A1S3C7Q5|A0A1S3C7Q5_CUCME (probable plastid-lipid-associated protein 11 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497655 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 9.2e-81
Identity = 166/181 (91.71%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 1   MAKSLSLPSRPFNSPSSSIGTRRSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60
           MAKSLSLPS PF SP SSI T  S LPKISCSSISIQSQS K QLL LISDQERGLKTQK
Sbjct: 1   MAKSLSLPSLPFISP-SSITTHLSHLPKISCSSISIQSQSAKHQLLTLISDQERGLKTQK 60

Query: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
           +PQKLASIVKSID LASL RNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV
Sbjct: 61  NPQKLASIVKSIDDLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDV+KKSLNNVITFPPDGVFFVRS+IEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ
Sbjct: 121 LQVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180

Query: 181 G 182
           G
Sbjct: 181 G 180

[Close]

BLAST of Carg26712 vs. TrEMBL
Match: tr|A0A0A0KDV9|A0A0A0KDV9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108600 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 3.3e-78
Identity = 161/181 (88.95%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 1   MAKSLSLPSRPFNSPSSSIGTRRSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60
           MAKSLSLPS PF  P SSI +  S LPKISCSSIS QSQS K QLL LISDQ+RGLKTQK
Sbjct: 1   MAKSLSLPSLPFIFP-SSITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQK 60

Query: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
           +PQKLASIVKSID LASL RNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGT+AGDV
Sbjct: 61  NPQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDV 120

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDV+KKSLNNVITFPPDGVFFVRS+IEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ
Sbjct: 121 LQVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180

Query: 181 G 182
           G
Sbjct: 181 G 180

[Close]

BLAST of Carg26712 vs. TrEMBL
Match: tr|A0A1R3HGM4|A0A1R3HGM4_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_19449 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 5.4e-65
Identity = 136/179 (75.98%), Postives = 154/179 (86.03%), Query Frame = 0


Query: 4   SLSLPSRPFNSPSSSIG-TRRSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQKSP 63
           S  +  RP  +PS ++      +LPKI+CSSI+ Q QS K  LL LISDQERGLKTQK P
Sbjct: 15  SNKIKRRPQLNPSPNLSELSHIRLPKIACSSITTQPQSAKQDLLNLISDQERGLKTQKDP 74

Query: 64  QKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQ 123
           +K  +IVK+I A+A  +R++VTTDDSLSATWRLLWTTEKEQLFIIEKA+LFGTQAGDVLQ
Sbjct: 75  KKRDAIVKAIVAMAVFSRDTVTTDDSLSATWRLLWTTEKEQLFIIEKAYLFGTQAGDVLQ 134

Query: 124 VIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 182
           VIDV+KK+LNNVITFPPDGVFFVRSSIEVASSQRVNF+FTSAVLRGKNWEIPLPPFGQG
Sbjct: 135 VIDVEKKTLNNVITFPPDGVFFVRSSIEVASSQRVNFKFTSAVLRGKNWEIPLPPFGQG 193

[Close]

BLAST of Carg26712 vs. TrEMBL
Match: tr|A0A1R3K0N0|A0A1R3K0N0_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_12466 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.7e-64
Identity = 135/179 (75.42%), Postives = 153/179 (85.47%), Query Frame = 0


Query: 4   SLSLPSRPFNSPSSSIG-TRRSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQKSP 63
           S  +  RP  +P+S+       +LP I+CSSI+ Q QS K  LL LISDQERGLKTQK P
Sbjct: 15  STKIKRRPQLNPNSNFSELSHIRLPIIACSSITTQPQSAKQDLLNLISDQERGLKTQKDP 74

Query: 64  QKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQ 123
           +K  +IVK+I+A+A L R++VTTDDSLSATWRLLWTTEKEQLFIIEKA+LFGTQAGDVLQ
Sbjct: 75  KKRDAIVKAIEAMAVLGRDTVTTDDSLSATWRLLWTTEKEQLFIIEKAYLFGTQAGDVLQ 134

Query: 124 VIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 182
           VIDV+KK+LNNVITFP DGVFFVRSSIEVASSQRVNF+FTSAVLRGKNWEIPLPPFGQG
Sbjct: 135 VIDVEKKTLNNVITFPQDGVFFVRSSIEVASSQRVNFKFTSAVLRGKNWEIPLPPFGQG 193

The following BLAST results are available for this feature:

BLAST of Carg26712 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974289.1	1.3e-110	95.98	probable plastid-lipid-associated protein 11, chloroplastic isoform X1 [Cucurbit...	[more]
XP_023006655.1	8.4e-110	95.54	probable plastid-lipid-associated protein 11, chloroplastic isoform X1 [Cucurbit...	[more]
XP_022959113.1	8.7e-91	99.45	probable plastid-lipid-associated protein 11, chloroplastic isoform X2 [Cucurbit...	[more]
XP_023547718.1	8.7e-91	95.72	probable plastid-lipid-associated protein 11, chloroplastic isoform X1 [Cucurbit...	[more]
XP_022959112.1	1.1e-90	85.51	probable plastid-lipid-associated protein 11, chloroplastic isoform X1 [Cucurbit...	[more]

BLAST of Carg26712 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00030.1	6.9e-58	56.81	Plastid-lipid associated protein PAP / fibrillin family protein	[more]

BLAST of Carg26712 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O81304\|PAP11_ARATH	1.3e-56	56.81	Probable plastid-lipid-associated protein 11, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Carg26712 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E2N2\|A0A1S4E2N2_CUCME	2.9e-82	90.81	probable plastid-lipid-associated protein 11 isoform X2 OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A1S3C7Q5\|A0A1S3C7Q5_CUCME	9.2e-81	91.71	probable plastid-lipid-associated protein 11 isoform X1 OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A0A0KDV9\|A0A0A0KDV9_CUCSA	3.3e-78	88.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108600 PE=4 SV=1	[more]
tr\|A0A1R3HGM4\|A0A1R3HGM4_COCAP	5.4e-65	75.98	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_19449 PE=4 ...	[more]
tr\|A0A1R3K0N0\|A0A1R3K0N0_9ROSI	2.7e-64	75.42	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_12466 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006843	PAP/fibrillin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26712-RA	Carg26712-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006843	Plastid lipid-associated protein/fibrillin conserved domain	PFAM	PF04755	PAP_fibrillin	coord: 42..170 e-value: 2.0E-28 score: 99.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR31906	FAMILY NOT NAMED	coord: 18..187
None	No IPR available	PANTHER	PTHR31906:SF3	PLASTID-LIPID-ASSOCIATED PROTEIN 11-RELATED	coord: 18..187

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26712	Cla006670	Watermelon (97103) v1	carwmB0556
Carg26712	Csa6G108600	Cucumber (Chinese Long) v2	carcuB0587
Carg26712	MELO3C021141	Melon (DHL92) v3.5.1	carmeB0563
Carg26712	ClCG06G003000	Watermelon (Charleston Gray)	carwcgB0544
Carg26712	CSPI06G08750	Wild cucumber (PI 183967)	carcpiB0593
Carg26712	Cucsa.120630	Cucumber (Gy14) v1	carcgyB0636
Carg26712	CmaCh17G004870	Cucurbita maxima (Rimu)	carcmaB0780
Carg26712	CmoCh17G004590	Cucurbita moschata (Rifu)	carcmoB0759
Carg26712	Lsi09G016310	Bottle gourd (USVL1VR-Ls)	carlsiB506
Carg26712	Cp4.1LG12g04190	Cucurbita pepo (Zucchini)	carcpeB0793
Carg26712	CsGy6G008850	Cucumber (Gy14) v2	carcgybB0563
Carg26712	MELO3C021141.2	Melon (DHL92) v3.6.1	carmedB0569
Carg26712	CsaV3_6G009120	Cucumber (Chinese Long) v3	carcucB0595
Carg26712	Cla97C06G112390	Watermelon (97103) v2	carwmbB0584
Carg26712	Bhi12G001914	Wax gourd	carwgoB0667

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None