CmoCh17G004590 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G004590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Plastid lipid-associated protein
Location	Cmo_Chr17 : 3232234 .. 3235433 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTAGAATAATTTGAAGAAGAAATAGATTTTTAATAAAATTGTGATTTTTTGGTTTTTTCATATATATATATTTTTCTCTTTTTTATTTCACAAAAATTGTGAAATAATCCCTAGAAAAAAAACTCAGAGAGGATGGATGATCACATAATTTTCTCATTATGGCCAAATCCCTCTCTCTTCCATCGCGTCCCTTCAATTCCCCTTCTTCTTCCATTGGAACCCGTCTCTCTCAACTCCCCAAAATCTCTTGTTCTTCCATATCCATTCAATCTCAATCACCCAAAGACCAACTCCTCGCCCTCATCTCCGACCAAGAAAGAGGTCTCAAGACCCAGAAAAGCCCTCAGAAACTTGCTTCAATTGTGAAATCAATCGACGCCTTGGCGTCTCTTGCTCGAAATTCTGTCACAACGGACGATTCACTTTCTGCGACATGGCGTCTTCTATGGACCACTGAGAAAGAGCAGCTGTTCATCATTGAGAAGGCTCACTTGTTTGGTACTCAAGCTGGGGATGTTTTGCAGGTGATTGATGTCAAGAAAAAGAGTCTTAATAATGTCATCACTTTTCCTCCAGATGGGGTTTTCTTCGTTCGATCCAGCATTGAAGTTGCTTCCTCTCAGAGAGTGAATTTTAGGTATGTTCTCTCTGCCTCTACTTTTAATCCATACCAATGTGCCTTTAATTTAGTCTTCATAGATGAATTGCTGTTTCAATTCAATGGTTGTATTTTAAAGCTATCAAATTAGCATATAATGTACATTTGATTTGATATTGAGTTTGAATCTGGTTGTTTAGATTTACAAGTGCTGTTCTGCGAGGAAAAAACTGGGAAATTCCTTTGCCACCATTCGGACAGGGCTGGTGAGTTAATTGTCTTTATGAGTTCCCTTTTGTTCGCTTTTTTTATATATGGTTAATGTTTATATGACATGTCTGAAATATTTGATATTAAACTCTGAGTTCACCATGTTCTTGCCGTAACCATTGATTTTGTTCGATCAATACTAGAATCAAAAGCTAGGACAAATTATAGACTGAGACTCATCAATGACTTCAATCCTTGATACATCAAAAACTCCACCTTCTGTCTCTACAAAAAGCTGATTCTCGGACAATATCATCCTTCATGTTAAAAGTCATTCAAAGAGAGAATTCTATTGAAGATATGAAGATATGAATCCAAGGGGTGTAATCAATATGAATCCAAGGGGTTTGAAAAGTCATTCAAAGAGAGAATTCTATTGAAGATATGCTGTGGTTTTATAGAAATAACAACACATTCCATGATCTTACACAAATTCCTATTGACTTCATTACATGCTACATTACAATCAAACATATTATGTGTCTGAAAAAAATATTCATCAATCCATCAAAGTGGCTGATAACTTCAAAGTACTATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACCTTCTTTATAAAGGAGTAGAAACCTCTCCCTAGCAAACGCGTTTTAAAAACCTTAAGGAGAAGCTCGAAAGGGAAAGTCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCCGTTACAAATGGTATTAGAGCTAGATACCAAGCGATGTGCCGAGGAGACTGAGTCCCAAAGGGCGTGGACACGAGGGGGTGTGCCAGCAAGGAGGCCGAGCCTTGAAGGGGGGTGGACATGAGACGGTGTGCCAGCAAGGACGCTGGGCCCCGAAGGAGGGTGGATTGTGAGATCCTACATCGGTTGGGGAGGAGAACAGAACATTCTTTATAAGGTGTGGAAACCTCTCACTAGCTAGAAAATATTTGTTGGTGGTAGGCTTGGGCCATTACAACTACGTTCCAGATCCACCTATCATATCCTAAAATGAAATTCAGACGAGTGTGCTTACCACTAGATCATTTCTCAACGAGGAAATGAAAATCACCATAGAACTTCCGTTTTCTTGTGGGATCTAAAACTATTGGGGAGTTACCATCTTAAATGAGTGAAGTATCGAAATGAAAATCACCATAGAACTTCCGTTTTCTTGTGGGATCTAAAACTATTGGGGAGTTACCATCTTAAATGAGTAAAGTATCGCAAATATTGGATTTAAAGAAGATATTGTCCGCTTTGGCCCATCACGTATCGCCGTCAGCCTCACGGTTTTACAACTTGTCTGCTAGGGAGAGGTTTTCATACTCGTTTCGTTTCCCTCTCCTCTCCAACCAATGTGGGATCTCGCATTAATCCTCTTTCTTTTATATTGTACTTCTCTGTTTCTGATCTGACGGTACCGACATTAGCTTGTTGAGGTTATTCCAAAAGAACCAATACTACTTACCAAGCAGCCTACAGCACCATTGCCTGTTTTGTTCCTCCAAAGAATCATGGACATGGGAAAACTGGAGTTCGATTCTATTTACGGCATGTTGATAGATGTCTTGTCCTCTAATGCCTCCAGTTATAATAAGAGAGCTCAACGAGTTCTACTTCTATTACAGTGAATGGTACGATATTATTTACTTGCACCCAATCGCTTGATTTTACTTTTGGATTTTACTAAAAGTGGATTTTACTAAAAATGAAATATTCTCTGTTTTTTTTTTGGGTCCATTTCTAACTTAAATGTTCATGTCCACATCTCGCAACATGTAATGGTTTGGGCGTTCATACTTGTATCTAAACTTGAATGAAAGATAATGTCTAGATCTTACAGATAAGAGTATTAGATGTTCTGGACCATTTTATTTGTTGTTCAATCATGAGCATAAATGTGGCATTTTGTCTTATTTTCTATAGGTTCGAGACGGTATACCTCGATGATGATATCCGGGTTGTAAAAGATATCCGAGATGATTATTTAATCGTTGAACGTGCTCCCTACACTTGGAAAGAATGAAAAGCTAGATCACTGGTTTTCATTGCTGCTATAGAAACACGATGCAGTAGATTGTATTGTATTAGTGTTAGTCATCTAAATTGATCCTACGTCTATCCTTCTGGATTCTGTGTCCTTATTATGCAACACTCATGCTGTTGCTCTCACTGTTTAGGTATTATTGTTGTAAACCTTGATTACCATTATTTGGGCTAACCATTGATAATGGGGTTATATTCATGTCAAAAGTTAAATGTTCGTATCCCATGTATATAGGCCCCTACATATCTATTGATAAATATATGTAGGCACAGGTATCCATTCATCTGTAGTCCAT

mRNA sequence

CCCTAGAATAATTTGAAGAAGAAATAGATTTTTAATAAAATTGTGATTTTTTGGTTTTTTCATATATATATATTTTTCTCTTTTTTATTTCACAAAAATTGTGAAATAATCCCTAGAAAAAAAACTCAGAGAGGATGGATGATCACATAATTTTCTCATTATGGCCAAATCCCTCTCTCTTCCATCGCGTCCCTTCAATTCCCCTTCTTCTTCCATTGGAACCCGTCTCTCTCAACTCCCCAAAATCTCTTGTTCTTCCATATCCATTCAATCTCAATCACCCAAAGACCAACTCCTCGCCCTCATCTCCGACCAAGAAAGAGGTCTCAAGACCCAGAAAAGCCCTCAGAAACTTGCTTCAATTGTGAAATCAATCGACGCCTTGGCGTCTCTTGCTCGAAATTCTGTCACAACGGACGATTCACTTTCTGCGACATGGCGTCTTCTATGGACCACTGAGAAAGAGCAGCTGTTCATCATTGAGAAGGCTCACTTGTTTGGTACTCAAGCTGGGGATGTTTTGCAGGTGATTGATGTCAAGAAAAAGAGTCTTAATAATGTCATCACTTTTCCTCCAGATGGGGTTTTCTTCGTTCGATCCAGCATTGAAGTTGCTTCCTCTCAGAGAGTGAATTTTAGATTTACAAGTGCTGTTCTGCGAGGAAAAAACTGGGAAATTCCTTTGCCACCATTCGGACAGGGCTGGTTCGAGACGGTATACCTCGATGATGATATCCGGGTTGTAAAAGATATCCGAGATGATTATTTAATCGTTGAACGTGCTCCCTACACTTGGAAAGAATGAAAAGCTAGATCACTGGTTTTCATTGCTGCTATAGAAACACGATGCAGTAGATTGTATTGTATTAGTGTTAGTCATCTAAATTGATCCTACGTCTATCCTTCTGGATTCTGTGTCCTTATTATGCAACACTCATGCTGTTGCTCTCACTGTTTAGGTATTATTGTTGTAAACCTTGATTACCATTATTTGGGCTAACCATTGATAATGGGGTTATATTCATGTCAAAAGTTAAATGTTCGTATCCCATGTATATAGGCCCCTACATATCTATTGATAAATATATGTAGGCACAGGTATCCATTCATCTGTAGTCCAT

Coding sequence (CDS)

ATGGCCAAATCCCTCTCTCTTCCATCGCGTCCCTTCAATTCCCCTTCTTCTTCCATTGGAACCCGTCTCTCTCAACTCCCCAAAATCTCTTGTTCTTCCATATCCATTCAATCTCAATCACCCAAAGACCAACTCCTCGCCCTCATCTCCGACCAAGAAAGAGGTCTCAAGACCCAGAAAAGCCCTCAGAAACTTGCTTCAATTGTGAAATCAATCGACGCCTTGGCGTCTCTTGCTCGAAATTCTGTCACAACGGACGATTCACTTTCTGCGACATGGCGTCTTCTATGGACCACTGAGAAAGAGCAGCTGTTCATCATTGAGAAGGCTCACTTGTTTGGTACTCAAGCTGGGGATGTTTTGCAGGTGATTGATGTCAAGAAAAAGAGTCTTAATAATGTCATCACTTTTCCTCCAGATGGGGTTTTCTTCGTTCGATCCAGCATTGAAGTTGCTTCCTCTCAGAGAGTGAATTTTAGATTTACAAGTGCTGTTCTGCGAGGAAAAAACTGGGAAATTCCTTTGCCACCATTCGGACAGGGCTGGTTCGAGACGGTATACCTCGATGATGATATCCGGGTTGTAAAAGATATCCGAGATGATTATTTAATCGTTGAACGTGCTCCCTACACTTGGAAAGAATGA

Homology

[Close]

BLAST of CmoCh17G004590 vs. Swiss-Prot
Match: PAP11_ARATH (Probable plastid-lipid-associated protein 11 OS=Arabidopsis thaliana GN=PAP11 PE=2 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.8e-73
Identity = 133/187 (71.12%), Postives = 157/187 (83.96%), Query Frame = 1


Query: 28  KISCSSISIQSQSPKDQLLALISDQERGLKTQKSPQKLASIVKSIDALASLARNSVTTDD 87
           + SCS  +  +Q  K +LL LIS+++RGL+TQK P+K   IV +I+++  + R+S+TTDD
Sbjct: 23  RTSCSIFANPAQRAKRKLLELISEEDRGLRTQKDPKKRDEIVNAIESMTVIGRSSITTDD 82

Query: 88  SLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVITFPPDGVFFVRS 147
           SLSATWRLLWTTEKEQLFIIEKA LFGT AGDVLQVIDV K+ LNNVITFPPDGVFFVRS
Sbjct: 83  SLSATWRLLWTTEKEQLFIIEKAGLFGTTAGDVLQVIDVNKRILNNVITFPPDGVFFVRS 142

Query: 148 SIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFETVYLDDDIRVVKDIRDDYLIVER 207
            I++AS QRVNFRF SAVLRGKNWE+PLPPFG+GWFE VY+D +IRV KDIR DYLIV+R
Sbjct: 143 DIDIASPQRVNFRFNSAVLRGKNWELPLPPFGKGWFENVYMDGEIRVAKDIRGDYLIVDR 202

Query: 208 APYTWKE 215
           APY W E
Sbjct: 203 APYNWTE 209

[Close]

BLAST of CmoCh17G004590 vs. TrEMBL
Match: A0A0A0KDV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108600 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 4.3e-98
Identity = 190/214 (88.79%), Postives = 199/214 (92.99%), Query Frame = 1


Query: 1   MAKSLSLPSRPFNSPSSSIGTRLSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60
           MAKSLSLPS PF  PSS I + LS LPKISCSSIS QSQS K QLL LISDQ+RGLKTQK
Sbjct: 1   MAKSLSLPSLPFIFPSS-ITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQK 60

Query: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
           +PQKLASIVKSID LASL RNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGT+AGDV
Sbjct: 61  NPQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDV 120

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDV+KKSLNNVITFPPDGVFFVRS+IEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ
Sbjct: 121 LQVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180

Query: 181 GWFETVYLDDDIRVVKDIRDDYLIVERAPYTWKE 215
           GWF+TVYLDD+IRVVKDIR DYLIVERAPY+W E
Sbjct: 181 GWFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE 213

[Close]

BLAST of CmoCh17G004590 vs. TrEMBL
Match: A0A0D2PR91_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G175700 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.6e-84
Identity = 158/188 (84.04%), Postives = 170/188 (90.43%), Query Frame = 1


Query: 27  PKISCSSISIQSQSPKDQLLALISDQERGLKTQKSPQKLASIVKSIDALASLARNSVTTD 86
           PKI+CSS++ QSQS K  LL LISDQERGLKTQ    K  SI+KSIDA+A L RN+VTT 
Sbjct: 30  PKITCSSLTTQSQSAKQHLLNLISDQERGLKTQNDTNKRDSIIKSIDAMAVLGRNTVTTG 89

Query: 87  DSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVITFPPDGVFFVR 146
           DSLSATWRLLWTTEKEQLFIIEKA+LFGTQAGDVLQVIDV  K+LNNVITFPPDGVFFVR
Sbjct: 90  DSLSATWRLLWTTEKEQLFIIEKAYLFGTQAGDVLQVIDVDNKTLNNVITFPPDGVFFVR 149

Query: 147 SSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFETVYLDDDIRVVKDIRDDYLIVE 206
           SSIE+ASSQRVNF+FTSAVLRGKNWE PLPPFGQGWFETVYLDD+IRVVKDIRDDYL+VE
Sbjct: 150 SSIEIASSQRVNFKFTSAVLRGKNWEFPLPPFGQGWFETVYLDDEIRVVKDIRDDYLVVE 209

Query: 207 RAPYTWKE 215
           RAPY WKE
Sbjct: 210 RAPYNWKE 217

[Close]

BLAST of CmoCh17G004590 vs. TrEMBL
Match: A0A061E254_THECC (Plastid-lipid associated protein PAP / fibrillin family protein isoform 1 OS=Theobroma cacao GN=TCM_005617 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.1e-82
Identity = 156/199 (78.39%), Postives = 177/199 (88.94%), Query Frame = 1


Query: 18  SIGTRLSQLP--KISCSSISIQSQSPKDQLLALISDQERGLKTQKSPQKLASIVKSIDAL 77
           S+ T+L + P  KI+CSS++ QSQS K  LL LISDQ+RGL +Q+ P K  +I+K+IDA+
Sbjct: 13  SLATKLKRRPHPKITCSSVTTQSQSAKQDLLNLISDQDRGLISQRDPAKRDAIIKAIDAM 72

Query: 78  ASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVI 137
           A L R++VTT DSLSATWRLLWTTEKEQLFIIEKAHL GT+AGDVLQVIDV+KK+LNNVI
Sbjct: 73  AILGRDTVTTGDSLSATWRLLWTTEKEQLFIIEKAHLLGTRAGDVLQVIDVEKKTLNNVI 132

Query: 138 TFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFETVYLDDDIRVV 197
           TFPPDGVFFVRSSIEV SSQRVNF+FTSAVLRGK+WEIPLPPFGQGWFETVYLDDD RVV
Sbjct: 133 TFPPDGVFFVRSSIEVTSSQRVNFKFTSAVLRGKSWEIPLPPFGQGWFETVYLDDDFRVV 192

Query: 198 KDIRDDYLIVERAPYTWKE 215
           KDIRDDYL+VERAPY WKE
Sbjct: 193 KDIRDDYLVVERAPYNWKE 211

[Close]

BLAST of CmoCh17G004590 vs. TrEMBL
Match: A0A0B0MT92_GOSAR (Putative plastid-lipid-associated 11, chloroplastic-like protein OS=Gossypium arboreum GN=F383_30062 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 7.4e-82
Identity = 155/188 (82.45%), Postives = 169/188 (89.89%), Query Frame = 1


Query: 27  PKISCSSISIQSQSPKDQLLALISDQERGLKTQKSPQKLASIVKSIDALASLARNSVTTD 86
           PKI+CSS++  +QS K  LL LISDQERGLKTQ    K  SI+K+IDA+A L RN+VTT 
Sbjct: 30  PKITCSSLT--TQSAKQHLLNLISDQERGLKTQNDTNKRDSIIKAIDAMAVLGRNTVTTG 89

Query: 87  DSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVITFPPDGVFFVR 146
           DSLSATWRLLWTTEKEQLFIIEKA+LFGTQAGDVLQVIDV  K+LNNVITFPPDGVFFVR
Sbjct: 90  DSLSATWRLLWTTEKEQLFIIEKAYLFGTQAGDVLQVIDVDNKTLNNVITFPPDGVFFVR 149

Query: 147 SSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFETVYLDDDIRVVKDIRDDYLIVE 206
           SSIE+ASSQRVNF+FTSAVLRGKNWE PLPPFGQGWFETVYLDD+IRVVKDIRDDYL+VE
Sbjct: 150 SSIEIASSQRVNFKFTSAVLRGKNWEFPLPPFGQGWFETVYLDDEIRVVKDIRDDYLVVE 209

Query: 207 RAPYTWKE 215
           RAPY WKE
Sbjct: 210 RAPYNWKE 215

[Close]

BLAST of CmoCh17G004590 vs. TrEMBL
Match: W9QQ39_9ROSA (Putative plastid-lipid-associated protein 11 OS=Morus notabilis GN=L484_021783 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.3e-81
Identity = 159/216 (73.61%), Postives = 182/216 (84.26%), Query Frame = 1


Query: 1   MAKSLSLPSRP--FNSPSSSIGTRLSQLPKISCSSISIQSQSPKDQLLALISDQERGLKT 60
           MA  L LP+ P  F +P  +     S  PKI+CSS++ QSQS K +LL LI+ ++RGLKT
Sbjct: 1   MASCLILPTIPSKFRNPKHT-----SHAPKITCSSLTAQSQSGKKELLRLIAGEDRGLKT 60

Query: 61  QKSPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAG 120
           Q++P KLASIVK+IDALA L   +VTT  SLSATWRLLWTTEKEQLFII+KA LFGT+AG
Sbjct: 61  QRNPTKLASIVKAIDALADLGAGAVTTGSSLSATWRLLWTTEKEQLFIIDKASLFGTRAG 120

Query: 121 DVLQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPF 180
           DVLQVIDV+K+ LNNVITFPPDGVFFVRS IE+AS QRVNFRFTSAVLRGKNWEIPLPPF
Sbjct: 121 DVLQVIDVEKRRLNNVITFPPDGVFFVRSDIEIASKQRVNFRFTSAVLRGKNWEIPLPPF 180

Query: 181 GQGWFETVYLDDDIRVVKDIRDDYLIVERAPYTWKE 215
           GQGWF+TVYLDD+IRVVKDIR DYL+V+RAPY WKE
Sbjct: 181 GQGWFDTVYLDDEIRVVKDIRGDYLVVDRAPYAWKE 211

[Close]

BLAST of CmoCh17G004590 vs. TAIR10
Match: AT4G00030.1 (AT4G00030.1 Plastid-lipid associated protein PAP / fibrillin family protein)

HSP 1 Score: 276.9 bits (707), Expect = 1.0e-74
Identity = 133/187 (71.12%), Postives = 157/187 (83.96%), Query Frame = 1


Query: 28  KISCSSISIQSQSPKDQLLALISDQERGLKTQKSPQKLASIVKSIDALASLARNSVTTDD 87
           + SCS  +  +Q  K +LL LIS+++RGL+TQK P+K   IV +I+++  + R+S+TTDD
Sbjct: 23  RTSCSIFANPAQRAKRKLLELISEEDRGLRTQKDPKKRDEIVNAIESMTVIGRSSITTDD 82

Query: 88  SLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVITFPPDGVFFVRS 147
           SLSATWRLLWTTEKEQLFIIEKA LFGT AGDVLQVIDV K+ LNNVITFPPDGVFFVRS
Sbjct: 83  SLSATWRLLWTTEKEQLFIIEKAGLFGTTAGDVLQVIDVNKRILNNVITFPPDGVFFVRS 142

Query: 148 SIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFETVYLDDDIRVVKDIRDDYLIVER 207
            I++AS QRVNFRF SAVLRGKNWE+PLPPFG+GWFE VY+D +IRV KDIR DYLIV+R
Sbjct: 143 DIDIASPQRVNFRFNSAVLRGKNWELPLPPFGKGWFENVYMDGEIRVAKDIRGDYLIVDR 202

Query: 208 APYTWKE 215
           APY W E
Sbjct: 203 APYNWTE 209

[Close]

BLAST of CmoCh17G004590 vs. NCBI nr
Match: gi|659116544|ref|XP_008458126.1| (PREDICTED: probable plastid-lipid-associated protein 11 [Cucumis melo])

HSP 1 Score: 374.0 bits (959), Expect = 1.7e-100
Identity = 195/214 (91.12%), Postives = 201/214 (93.93%), Query Frame = 1


Query: 1   MAKSLSLPSRPFNSPSSSIGTRLSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60
           MAKSLSLPS PF SPSS I T LS LPKISCSSISIQSQS K QLL LISDQERGLKTQK
Sbjct: 1   MAKSLSLPSLPFISPSS-ITTHLSHLPKISCSSISIQSQSAKHQLLTLISDQERGLKTQK 60

Query: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
           +PQKLASIVKSID LASL RNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV
Sbjct: 61  NPQKLASIVKSIDDLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDV+KKSLNNVITFPPDGVFFVRS+IEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ
Sbjct: 121 LQVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180

Query: 181 GWFETVYLDDDIRVVKDIRDDYLIVERAPYTWKE 215
           GWF+TVYLDD+IRVVKDIR DYLIVERAPY+W E
Sbjct: 181 GWFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE 213

[Close]

BLAST of CmoCh17G004590 vs. NCBI nr
Match: gi|449445459|ref|XP_004140490.1| (PREDICTED: probable plastid-lipid-associated protein 11 [Cucumis sativus])

HSP 1 Score: 365.5 bits (937), Expect = 6.2e-98
Identity = 190/214 (88.79%), Postives = 199/214 (92.99%), Query Frame = 1


Query: 1   MAKSLSLPSRPFNSPSSSIGTRLSQLPKISCSSISIQSQSPKDQLLALISDQERGLKTQK 60
           MAKSLSLPS PF  PSS I + LS LPKISCSSIS QSQS K QLL LISDQ+RGLKTQK
Sbjct: 1   MAKSLSLPSLPFIFPSS-ITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQK 60

Query: 61  SPQKLASIVKSIDALASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDV 120
           +PQKLASIVKSID LASL RNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGT+AGDV
Sbjct: 61  NPQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDV 120

Query: 121 LQVIDVKKKSLNNVITFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180
           LQVIDV+KKSLNNVITFPPDGVFFVRS+IEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ
Sbjct: 121 LQVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQ 180

Query: 181 GWFETVYLDDDIRVVKDIRDDYLIVERAPYTWKE 215
           GWF+TVYLDD+IRVVKDIR DYLIVERAPY+W E
Sbjct: 181 GWFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE 213

[Close]

BLAST of CmoCh17G004590 vs. NCBI nr
Match: gi|823125162|ref|XP_012483102.1| (PREDICTED: probable plastid-lipid-associated protein 11 [Gossypium raimondii])

HSP 1 Score: 320.5 bits (820), Expect = 2.3e-84
Identity = 158/188 (84.04%), Postives = 170/188 (90.43%), Query Frame = 1


Query: 27  PKISCSSISIQSQSPKDQLLALISDQERGLKTQKSPQKLASIVKSIDALASLARNSVTTD 86
           PKI+CSS++ QSQS K  LL LISDQERGLKTQ    K  SI+KSIDA+A L RN+VTT 
Sbjct: 30  PKITCSSLTTQSQSAKQHLLNLISDQERGLKTQNDTNKRDSIIKSIDAMAVLGRNTVTTG 89

Query: 87  DSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVITFPPDGVFFVR 146
           DSLSATWRLLWTTEKEQLFIIEKA+LFGTQAGDVLQVIDV  K+LNNVITFPPDGVFFVR
Sbjct: 90  DSLSATWRLLWTTEKEQLFIIEKAYLFGTQAGDVLQVIDVDNKTLNNVITFPPDGVFFVR 149

Query: 147 SSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFETVYLDDDIRVVKDIRDDYLIVE 206
           SSIE+ASSQRVNF+FTSAVLRGKNWE PLPPFGQGWFETVYLDD+IRVVKDIRDDYL+VE
Sbjct: 150 SSIEIASSQRVNFKFTSAVLRGKNWEFPLPPFGQGWFETVYLDDEIRVVKDIRDDYLVVE 209

Query: 207 RAPYTWKE 215
           RAPY WKE
Sbjct: 210 RAPYNWKE 217

[Close]

BLAST of CmoCh17G004590 vs. NCBI nr
Match: gi|590723499|ref|XP_007052201.1| (Plastid-lipid associated protein PAP / fibrillin family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 314.3 bits (804), Expect = 1.6e-82
Identity = 156/199 (78.39%), Postives = 177/199 (88.94%), Query Frame = 1


Query: 18  SIGTRLSQLP--KISCSSISIQSQSPKDQLLALISDQERGLKTQKSPQKLASIVKSIDAL 77
           S+ T+L + P  KI+CSS++ QSQS K  LL LISDQ+RGL +Q+ P K  +I+K+IDA+
Sbjct: 13  SLATKLKRRPHPKITCSSVTTQSQSAKQDLLNLISDQDRGLISQRDPAKRDAIIKAIDAM 72

Query: 78  ASLARNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVI 137
           A L R++VTT DSLSATWRLLWTTEKEQLFIIEKAHL GT+AGDVLQVIDV+KK+LNNVI
Sbjct: 73  AILGRDTVTTGDSLSATWRLLWTTEKEQLFIIEKAHLLGTRAGDVLQVIDVEKKTLNNVI 132

Query: 138 TFPPDGVFFVRSSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFETVYLDDDIRVV 197
           TFPPDGVFFVRSSIEV SSQRVNF+FTSAVLRGK+WEIPLPPFGQGWFETVYLDDD RVV
Sbjct: 133 TFPPDGVFFVRSSIEVTSSQRVNFKFTSAVLRGKSWEIPLPPFGQGWFETVYLDDDFRVV 192

Query: 198 KDIRDDYLIVERAPYTWKE 215
           KDIRDDYL+VERAPY WKE
Sbjct: 193 KDIRDDYLVVERAPYNWKE 211

[Close]

BLAST of CmoCh17G004590 vs. NCBI nr
Match: gi|728820891|gb|KHG03985.1| (putative plastid-lipid-associated 11, chloroplastic -like protein [Gossypium arboreum])

HSP 1 Score: 311.6 bits (797), Expect = 1.1e-81
Identity = 155/188 (82.45%), Postives = 169/188 (89.89%), Query Frame = 1


Query: 27  PKISCSSISIQSQSPKDQLLALISDQERGLKTQKSPQKLASIVKSIDALASLARNSVTTD 86
           PKI+CSS++  +QS K  LL LISDQERGLKTQ    K  SI+K+IDA+A L RN+VTT 
Sbjct: 30  PKITCSSLT--TQSAKQHLLNLISDQERGLKTQNDTNKRDSIIKAIDAMAVLGRNTVTTG 89

Query: 87  DSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVLQVIDVKKKSLNNVITFPPDGVFFVR 146
           DSLSATWRLLWTTEKEQLFIIEKA+LFGTQAGDVLQVIDV  K+LNNVITFPPDGVFFVR
Sbjct: 90  DSLSATWRLLWTTEKEQLFIIEKAYLFGTQAGDVLQVIDVDNKTLNNVITFPPDGVFFVR 149

Query: 147 SSIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFETVYLDDDIRVVKDIRDDYLIVE 206
           SSIE+ASSQRVNF+FTSAVLRGKNWE PLPPFGQGWFETVYLDD+IRVVKDIRDDYL+VE
Sbjct: 150 SSIEIASSQRVNFKFTSAVLRGKNWEFPLPPFGQGWFETVYLDDEIRVVKDIRDDYLVVE 209

Query: 207 RAPYTWKE 215
           RAPY WKE
Sbjct: 210 RAPYNWKE 215

The following BLAST results are available for this feature:

BLAST of CmoCh17G004590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PAP11_ARATH	1.8e-73	71.12	Probable plastid-lipid-associated protein 11 OS=Arabidopsis thaliana GN=PAP11 PE...	[more]

BLAST of CmoCh17G004590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDV9_CUCSA	4.3e-98	88.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108600 PE=4 SV=1	[more]
A0A0D2PR91_GOSRA	1.6e-84	84.04	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G175700 PE=4 SV=1	[more]
A0A061E254_THECC	1.1e-82	78.39	Plastid-lipid associated protein PAP / fibrillin family protein isoform 1 OS=The...	[more]
A0A0B0MT92_GOSAR	7.4e-82	82.45	Putative plastid-lipid-associated 11, chloroplastic-like protein OS=Gossypium ar...	[more]
W9QQ39_9ROSA	1.3e-81	73.61	Putative plastid-lipid-associated protein 11 OS=Morus notabilis GN=L484_021783 P...	[more]

BLAST of CmoCh17G004590 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00030.1	1.0e-74	71.12	Plastid-lipid associated protein PAP / fibrillin family protein	[more]

BLAST of CmoCh17G004590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116544\|ref\|XP_008458126.1\|	1.7e-100	91.12	PREDICTED: probable plastid-lipid-associated protein 11 [Cucumis melo]	[more]
gi\|449445459\|ref\|XP_004140490.1\|	6.2e-98	88.79	PREDICTED: probable plastid-lipid-associated protein 11 [Cucumis sativus]	[more]
gi\|823125162\|ref\|XP_012483102.1\|	2.3e-84	84.04	PREDICTED: probable plastid-lipid-associated protein 11 [Gossypium raimondii]	[more]
gi\|590723499\|ref\|XP_007052201.1\|	1.6e-82	78.39	Plastid-lipid associated protein PAP / fibrillin family protein isoform 1 [Theob...	[more]
gi\|728820891\|gb\|KHG03985.1\|	1.1e-81	82.45	putative plastid-lipid-associated 11, chloroplastic -like protein [Gossypium arb...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006843	PAP/fibrillin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G004590.1	CmoCh17G004590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006843	Plastid lipid-associated protein/fibrillin conserved domain	PFAM	PF04755	PAP_fibrillin	coord: 42..205 score: 4.7
None	No IPR available	PANTHER	PTHR31906	FAMILY NOT NAMED	coord: 1..214 score: 5.5
None	No IPR available	PANTHER	PTHR31906:SF3	SUBFAMILY NOT NAMED	coord: 1..214 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G004590	Cucsa.120630	Cucumber (Gy14) v1	cgycmoB0292
CmoCh17G004590	CmaCh17G004870	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G004590	Cla006670	Watermelon (97103) v1	cmowmB346
CmoCh17G004590	Csa6G108600	Cucumber (Chinese Long) v2	cmocuB369
CmoCh17G004590	MELO3C021141	Melon (DHL92) v3.5.1	cmomeB306
CmoCh17G004590	ClCG06G003000	Watermelon (Charleston Gray)	cmowcgB325
CmoCh17G004590	CSPI06G08750	Wild cucumber (PI 183967)	cmocpiB372
CmoCh17G004590	Lsi09G016310	Bottle gourd (USVL1VR-Ls)	cmolsiB320
CmoCh17G004590	Cp4.1LG12g04190	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G004590	MELO3C021141.2	Melon (DHL92) v3.6.1	cmomedB351
CmoCh17G004590	CsaV3_6G009120	Cucumber (Chinese Long) v3	cmocucB0444
CmoCh17G004590	Cla97C06G112390	Watermelon (97103) v2	cmowmbB361
CmoCh17G004590	Bhi12G001914	Wax gourd	cmowgoB0455
CmoCh17G004590	CsGy6G008850	Cucumber (Gy14) v2	cgybcmoB744
CmoCh17G004590	Carg26712	Silver-seed gourd	carcmoB0759

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G004590	Silver-seed gourd	carcmoB0819
CmoCh17G004590	Cucurbita moschata (Rifu)	cmocmoB321
CmoCh17G004590	Cucurbita maxima (Rimu)	cmacmoB898
CmoCh17G004590	Cucurbita pepo (Zucchini)	cmocpeB341