Csa6G108600 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G108600
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Plastid-lipid associated protein; contains IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)
Location	Chr6 : 7303911 .. 7307440 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGGCAATCAGATTGATCGTCCTGGAACCAATGAAATGGAGCCCAATCTTGTCTTAGTCATCTCAAATATGATCCCCGACCTTTCAATTCCAAAGCTTCGAATAATGTCAGGTTAACAAAACTCCCAGCCATGGAAATTGCATCTGTTCCTTCTTTGCTTTGCTTCTACAATCTCACCCATGGCCAAATCCCTCTCCCTTCCATCTCTCCCCTTCATTTTCCCTTCTTCCATTACAAGCCATCTCTCACACCTCCCCAAAATCTCTTGCTCTTCCATTTCTTTTCAATCTCAATCAGCCAAACGCCAGCTTCTCACTCTCATTTCTGACCAACAAAGAGGTCTCAAGACCCAGAAAAATCCTCAGAAACTTGCTTCAATTGTGAAATCAATCGACCACTTGGCTTCTCTTGGCCGTAATTCTGTCACTACCGACGATTCACTTTCTGCGACATGGCGTCTTCTGTGGACTACTGAGAAAGAGCAGCTGTTCATCATTGAGAAGGCTCACTTGTTTGGTACTCGAGCTGGGGACGTTTTGCAGGTCATTGATGTTGAGAAAAAGAGTCTCAATAATGTTATCACTTTTCCTCCAGATGGGGTTTTCTTTGTTCGGTCAAACATTGAAGTTGCTTCCTCTCAGAGAGTGAACTTTAGGTATCTTGTCTCTGCCCCTGTCTCTTGTTTGGTTGAATTGCTGTTTGAGTTTAATGGGTGTCTCTTGAAATCAGAAAATTAGTAATTTTGTATATAATAATGATTCTAGAGGCTACTTAGTATGCAATCTCAGATATGTGGGAGAACTTAGCTCTAGTTTCAGAGGTCTCATAGAGGATTGATTAATTTTGAGTGTGGTGGATGGAATGAAATGGGTTTGTCATGGGGTTTAATTTTAAGCTCATGTTCAGATGGAGCTTTTGGACCAGTTTCTAATTCCAAACTCATTCATTTTCCGTAGTTTTCAACTCAACTCTCCTTTCCACCATTTTCATGCTTTCCTTAACCATATCTTATAAAACATAGAGACCTATTATTTGTCACTCTGCTTATTTTTGTTATCTATTAAATTCATGTGCAACTATTTATTCCAAAAAACTCTTTAATTTATGGTTGAACTGCTCGATTAAGTTTACGTGCAACTATTGCAAAGCATCTAGATATTGAAATTCTACGTACTTTATGTTTATTATTGTTTTGTAGATAATGATGTTGAGTTTGAATCTCACTGTTTAGATTTACAAGTGCTGTTCTGCGAGGGAAAAACTGGGAGATTCCATTGCCACCATTTGGACAGGGTTGGTGAGTAATTATCTTTATGATTATGATCTCGTGGGTTGTATTATTTGTGTGCCTCAAATGCATGGTTTCATTTTACTATTTGCAGCTTTCAGTTTAAGACCAAAACATGCTTTAAACCAAATATTAAAATTTCGAGAACAACGTTATATTTCAAATTGACATTCAAAAGCTCCCTAAATCCATAGTGGCTACCTGGAGAGGCAATAAGACAATTAACTAATTAATTCTCAAATACTAGTTAATATAAATTAACAACCAAGCTACTATTAACTAAATTATACATATAATTTTGTAATTCTTCTCATCGACATATCTATAGTATAGTATGATATTGCCATACTTTGGACATAATATCTCTCATAACTTCGCTTTTGATTTCATTCAAGAAGAAGCCTCATATTTTGGGGATGGTTGTCCTAAATTCTAATTTATGTACTCGTAATGTTTCCCTTATCTAGCTAACATTAGACTTAAATCACAGTGTCAACAGGAATAGGATGAAAGAAGAAGAGGGAGCTAGGTGGGAATTTAACCCAATCATGGATATTGAGAATAATGTTGATTGATATAGGATTTAAGATGTATTGTTGAGCATAAGTCTACACGATCATCTGAAACAAGTTTGGTTCTTTGAGAGAAATCTCGATTTTAAAGTTATATTAGTTATGAGTAAGAAAGGCAATTGTTTAATAGTTATGGGCACGTGTAAGGATTTGATAGAATCCCAAACACAGGAGAAGTGGAGAAAATACCAATGGCCTATCAACAAACTTTCTAGATGCCTCTCTCTCTCTGAATCTCACAATAAACAATCCCACCCAAAATGATCCTCTCCCTCCAAAACCTTAACTCTATTTTTTACCAAGTCACTCCTAGCAAATTACCAGTTTCCACTATGCCCTTGCTAATTATATAACCAAGTCATGACATGGTGTAATTTATATAAATCCGAGTTTAAAATTAGATGATTCAAAGAAAGAACTCCTTTTAAGCATATGATCTACAGCAGCAATGGCTCTGTATCTAAGAAACGCATTCGCTGGAATAAATCCACACAAAAATTTTATAGACTGATACGTGCTTCACAACAATGTAACATATTAAGCGTATGAGAAGAAATACGCACCAGACCCCTAAGTAATGACTGATAACTTCAAAGGTACTAACTTTCCCATAAGTTAAAAATAAGTTCTTGATTGAGATCCACCTACTATACCCTTCCATGAGATCCAAAGGAGTGTGTTTATCACTAGACCAATTCTCAATAAGAAAATGGAAATCACCATAGAGCTTCAGTTTTCTTTGGTATATCTAAAACTGTTGGGGAGTTACCATCTTCAAGTTTGAGTAAAGCATTATCTGCCATGTAAGGGTTAAGATAAACTGAGATCTTATAATGATCTTCCAAAGCATCTTTAATTTCTTTACAGTTATAAATTATGATCGAACATCACTACATTCTGGCCACATCCCTGCAAAATCAGAATCCGTATAGACGAACAATTTAAGTAATTTTGAAGCAAAAGGGGACCATACAGAGAAGATTTTTTTTTTACTCCATTTATCTATGTTCACATCTCCAGCAACTTGTGGTTTGGACATTGATTCCTATATCTAAACTCGAACAAGGACTATTTCTAGATCATAAAGATCCAACTTGGGCTGCAGTTTTGGAGACATTTTTGTAATTATCTTGTAGGTAGTATCTTACATAGTTAGAAAATCTTTCTTTAAAGGGGTTTCACACAATCTTTTTTTTTTTTTTTTTATGCTTTAATATTTTTTCTCAACTAAAGCAACCTTTTCTATTAAACTTGAAAGGCCTTGTCATGTTCTGCGTTTCTCGTGTTCTTTTTTTGAACTATTTTGTTAGTAATTCAATCATGAACATAAATTGTGGCATTTTCTTTTATTTTCTGTAGGTTTGACACAGTATACCTCGATGACGAGATTCGGGTTGTAAAAGATATCCGAGGTGATTATTTGATTGTTGAACGTGCTCCTTACAGTTGGACAGAATGAAGGCTGAATCACAAGTTTTCAATGGTGCTGTACAAACATGATGTAGTTGATTATAGTTGTGTTACTCATCTAATTTTTCTCCCAAGTAGATTTATCCTTATGGTATCTGTATTCATATCATGCAAGACATGCAACAACTTCTCTCACTCTGTATATATTTAATCTTACAAGTCTTTCCACTTATAATTTATTTATATTTTTTATTTTCTG

mRNA sequence

ATGGCCAAATCCCTCTCCCTTCCATCTCTCCCCTTCATTTTCCCTTCTTCCATTACAAGCCATCTCTCACACCTCCCCAAAATCTCTTGCTCTTCCATTTCTTTTCAATCTCAATCAGCCAAACGCCAGCTTCTCACTCTCATTTCTGACCAACAAAGAGGTCTCAAGACCCAGAAAAATCCTCAGAAACTTGCTTCAATTGTGAAATCAATCGACCACTTGGCTTCTCTTGGCCGTAATTCTGTCACTACCGACGATTCACTTTCTGCGACATGGCGTCTTCTGTGGACTACTGAGAAAGAGCAGCTGTTCATCATTGAGAAGGCTCACTTGTTTGGTACTCGAGCTGGGGACGTTTTGCAGGTCATTGATGTTGAGAAAAAGAGTCTCAATAATGTTATCACTTTTCCTCCAGATGGGGTTTTCTTTGTTCGGTCAAACATTGAAGTTGCTTCCTCTCAGAGAGTGAACTTTAGATTTACAAGTGCTGTTCTGCGAGGGAAAAACTGGGAGATTCCATTGCCACCATTTGGACAGGGTTGGTTTGACACAGTATACCTCGATGACGAGATTCGGGTTGTAAAAGATATCCGAGGTGATTATTTGATTGTTGAACGTGCTCCTTACAGTTGGACAGAATGA

Coding sequence (CDS)

ATGGCCAAATCCCTCTCCCTTCCATCTCTCCCCTTCATTTTCCCTTCTTCCATTACAAGCCATCTCTCACACCTCCCCAAAATCTCTTGCTCTTCCATTTCTTTTCAATCTCAATCAGCCAAACGCCAGCTTCTCACTCTCATTTCTGACCAACAAAGAGGTCTCAAGACCCAGAAAAATCCTCAGAAACTTGCTTCAATTGTGAAATCAATCGACCACTTGGCTTCTCTTGGCCGTAATTCTGTCACTACCGACGATTCACTTTCTGCGACATGGCGTCTTCTGTGGACTACTGAGAAAGAGCAGCTGTTCATCATTGAGAAGGCTCACTTGTTTGGTACTCGAGCTGGGGACGTTTTGCAGGTCATTGATGTTGAGAAAAAGAGTCTCAATAATGTTATCACTTTTCCTCCAGATGGGGTTTTCTTTGTTCGGTCAAACATTGAAGTTGCTTCCTCTCAGAGAGTGAACTTTAGATTTACAAGTGCTGTTCTGCGAGGGAAAAACTGGGAGATTCCATTGCCACCATTTGGACAGGGTTGGTTTGACACAGTATACCTCGATGACGAGATTCGGGTTGTAAAAGATATCCGAGGTGATTATTTGATTGTTGAACGTGCTCCTTACAGTTGGACAGAATGA

Protein sequence

MAKSLSLPSLPFIFPSSITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKNPQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVLQVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE*

Homology

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BLAST of Csa6G108600 vs. Swiss-Prot
Match: PAP11_ARATH (Probable plastid-lipid-associated protein 11 OS=Arabidopsis thaliana GN=PAP11 PE=2 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.7e-77
Identity = 138/187 (73.80%), Postives = 161/187 (86.10%), Query Frame = 1


Query: 27  KISCSSISFQSQSAKRQLLTLISDQQRGLKTQKNPQKLASIVKSIDHLASLGRNSVTTDD 86
           + SCS  +  +Q AKR+LL LIS++ RGL+TQK+P+K   IV +I+ +  +GR+S+TTDD
Sbjct: 23  RTSCSIFANPAQRAKRKLLELISEEDRGLRTQKDPKKRDEIVNAIESMTVIGRSSITTDD 82

Query: 87  SLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVLQVIDVEKKSLNNVITFPPDGVFFVRS 146
           SLSATWRLLWTTEKEQLFIIEKA LFGT AGDVLQVIDV K+ LNNVITFPPDGVFFVRS
Sbjct: 83  SLSATWRLLWTTEKEQLFIIEKAGLFGTTAGDVLQVIDVNKRILNNVITFPPDGVFFVRS 142

Query: 147 NIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFDTVYLDDEIRVVKDIRGDYLIVER 206
           +I++AS QRVNFRF SAVLRGKNWE+PLPPFG+GWF+ VY+D EIRV KDIRGDYLIV+R
Sbjct: 143 DIDIASPQRVNFRFNSAVLRGKNWELPLPPFGKGWFENVYMDGEIRVAKDIRGDYLIVDR 202

Query: 207 APYSWTE 214
           APY+WTE
Sbjct: 203 APYNWTE 209

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BLAST of Csa6G108600 vs. TrEMBL
Match: A0A0A0KDV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108600 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.0e-115
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1


Query: 1   MAKSLSLPSLPFIFPSSITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKN 60
           MAKSLSLPSLPFIFPSSITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKN
Sbjct: 1   MAKSLSLPSLPFIFPSSITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKN 60

Query: 61  PQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVL 120
           PQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVL
Sbjct: 61  PQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVL 120

Query: 121 QVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 180
           QVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG
Sbjct: 121 QVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 180

Query: 181 WFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE 214
           WFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE
Sbjct: 181 WFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE 213

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BLAST of Csa6G108600 vs. TrEMBL
Match: W9QQ39_9ROSA (Putative plastid-lipid-associated protein 11 OS=Morus notabilis GN=L484_021783 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 2.4e-88
Identity = 165/213 (77.46%), Postives = 185/213 (86.85%), Query Frame = 1


Query: 1   MAKSLSLPSLPFIFPSSITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKN 60
           MA  L LP++P  F +    H SH PKI+CSS++ QSQS K++LL LI+ + RGLKTQ+N
Sbjct: 1   MASCLILPTIPSKFRNP--KHTSHAPKITCSSLTAQSQSGKKELLRLIAGEDRGLKTQRN 60

Query: 61  PQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVL 120
           P KLASIVK+ID LA LG  +VTT  SLSATWRLLWTTEKEQLFII+KA LFGTRAGDVL
Sbjct: 61  PTKLASIVKAIDALADLGAGAVTTGSSLSATWRLLWTTEKEQLFIIDKASLFGTRAGDVL 120

Query: 121 QVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 180
           QVIDVEK+ LNNVITFPPDGVFFVRS+IE+AS QRVNFRFTSAVLRGKNWEIPLPPFGQG
Sbjct: 121 QVIDVEKRRLNNVITFPPDGVFFVRSDIEIASKQRVNFRFTSAVLRGKNWEIPLPPFGQG 180

Query: 181 WFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE 214
           WFDTVYLDDEIRVVKDIRGDYL+V+RAPY+W E
Sbjct: 181 WFDTVYLDDEIRVVKDIRGDYLVVDRAPYAWKE 211

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BLAST of Csa6G108600 vs. TrEMBL
Match: A0A0D2PR91_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G175700 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.0e-83
Identity = 154/188 (81.91%), Postives = 173/188 (92.02%), Query Frame = 1


Query: 26  PKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKNPQKLASIVKSIDHLASLGRNSVTTD 85
           PKI+CSS++ QSQSAK+ LL LISDQ+RGLKTQ +  K  SI+KSID +A LGRN+VTT 
Sbjct: 30  PKITCSSLTTQSQSAKQHLLNLISDQERGLKTQNDTNKRDSIIKSIDAMAVLGRNTVTTG 89

Query: 86  DSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVLQVIDVEKKSLNNVITFPPDGVFFVR 145
           DSLSATWRLLWTTEKEQLFIIEKA+LFGT+AGDVLQVIDV+ K+LNNVITFPPDGVFFVR
Sbjct: 90  DSLSATWRLLWTTEKEQLFIIEKAYLFGTQAGDVLQVIDVDNKTLNNVITFPPDGVFFVR 149

Query: 146 SNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFDTVYLDDEIRVVKDIRGDYLIVE 205
           S+IE+ASSQRVNF+FTSAVLRGKNWE PLPPFGQGWF+TVYLDDEIRVVKDIR DYL+VE
Sbjct: 150 SSIEIASSQRVNFKFTSAVLRGKNWEFPLPPFGQGWFETVYLDDEIRVVKDIRDDYLVVE 209

Query: 206 RAPYSWTE 214
           RAPY+W E
Sbjct: 210 RAPYNWKE 217

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BLAST of Csa6G108600 vs. TrEMBL
Match: A0A067H1B9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027529mg PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.3e-83
Identity = 153/191 (80.10%), Postives = 173/191 (90.58%), Query Frame = 1


Query: 23  SHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKNPQKLASIVKSIDHLASLGRNSV 82
           +H  +I+CSS + QSQSAK++LL LI+DQ RGLKTQK+P K +SI+K+ID +A LG +  
Sbjct: 32  NHASRITCSSTTNQSQSAKQELLNLIADQDRGLKTQKDPNKRSSIIKAIDDMAVLGSDMD 91

Query: 83  TTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVLQVIDVEKKSLNNVITFPPDGVF 142
           TT DSLSATWRLLWTTEKEQLFIIEKA+LFGT+ GDVLQVIDVEKK LNNVITFPPDGVF
Sbjct: 92  TTGDSLSATWRLLWTTEKEQLFIIEKAYLFGTQTGDVLQVIDVEKKVLNNVITFPPDGVF 151

Query: 143 FVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFDTVYLDDEIRVVKDIRGDYL 202
           FVRSNIE+AS QRVNFRFTSAVLRGKNWE+PLPPFG+GWF+TVYLDDEIRVVKDIRGDYL
Sbjct: 152 FVRSNIEIASPQRVNFRFTSAVLRGKNWEVPLPPFGKGWFETVYLDDEIRVVKDIRGDYL 211

Query: 203 IVERAPYSWTE 214
           +VERAPY WTE
Sbjct: 212 VVERAPYQWTE 222

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BLAST of Csa6G108600 vs. TrEMBL
Match: U5FPZ5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05740g PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.3e-83
Identity = 157/209 (75.12%), Postives = 184/209 (88.04%), Query Frame = 1


Query: 5   LSLPSLPFIFPSSITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKNPQKL 64
           L +P  P I P    S      KI+CSSI+ QSQSAK+ LLTLISDQ RGLKTQ +P K 
Sbjct: 9   LPVPFKPAIIPPKPIS------KITCSSITTQSQSAKQHLLTLISDQHRGLKTQNDPIKR 68

Query: 65  ASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVLQVID 124
           +SI+++ID +A LG+++VTTDDSLSATWRLLWTTEKEQLFIIEKA LFGT+AGDVLQVID
Sbjct: 69  SSIIQAIDAMADLGKDTVTTDDSLSATWRLLWTTEKEQLFIIEKAPLFGTQAGDVLQVID 128

Query: 125 VEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFDT 184
           VEK++LNNVITFPPDGVFFVRS+IEV+SSQRVNFRFTSAVLRGKNWEIPLPPFGQGWF++
Sbjct: 129 VEKRTLNNVITFPPDGVFFVRSSIEVSSSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFES 188

Query: 185 VYLDDEIRVVKDIRGDYLIVERAPYSWTE 214
           +Y+D+EIRVVKDIRGDYL+V++APY+W E
Sbjct: 189 LYIDEEIRVVKDIRGDYLVVDKAPYAWKE 211

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BLAST of Csa6G108600 vs. TAIR10
Match: AT4G00030.1 (AT4G00030.1 Plastid-lipid associated protein PAP / fibrillin family protein)

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-78
Identity = 138/187 (73.80%), Postives = 161/187 (86.10%), Query Frame = 1


Query: 27  KISCSSISFQSQSAKRQLLTLISDQQRGLKTQKNPQKLASIVKSIDHLASLGRNSVTTDD 86
           + SCS  +  +Q AKR+LL LIS++ RGL+TQK+P+K   IV +I+ +  +GR+S+TTDD
Sbjct: 23  RTSCSIFANPAQRAKRKLLELISEEDRGLRTQKDPKKRDEIVNAIESMTVIGRSSITTDD 82

Query: 87  SLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVLQVIDVEKKSLNNVITFPPDGVFFVRS 146
           SLSATWRLLWTTEKEQLFIIEKA LFGT AGDVLQVIDV K+ LNNVITFPPDGVFFVRS
Sbjct: 83  SLSATWRLLWTTEKEQLFIIEKAGLFGTTAGDVLQVIDVNKRILNNVITFPPDGVFFVRS 142

Query: 147 NIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFDTVYLDDEIRVVKDIRGDYLIVER 206
           +I++AS QRVNFRF SAVLRGKNWE+PLPPFG+GWF+ VY+D EIRV KDIRGDYLIV+R
Sbjct: 143 DIDIASPQRVNFRFNSAVLRGKNWELPLPPFGKGWFENVYMDGEIRVAKDIRGDYLIVDR 202

Query: 207 APYSWTE 214
           APY+WTE
Sbjct: 203 APYNWTE 209

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BLAST of Csa6G108600 vs. NCBI nr
Match: gi|449445459|ref|XP_004140490.1| (PREDICTED: probable plastid-lipid-associated protein 11 [Cucumis sativus])

HSP 1 Score: 424.1 bits (1089), Expect = 1.5e-115
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1


Query: 1   MAKSLSLPSLPFIFPSSITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKN 60
           MAKSLSLPSLPFIFPSSITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKN
Sbjct: 1   MAKSLSLPSLPFIFPSSITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKN 60

Query: 61  PQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVL 120
           PQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVL
Sbjct: 61  PQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVL 120

Query: 121 QVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 180
           QVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG
Sbjct: 121 QVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 180

Query: 181 WFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE 214
           WFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE
Sbjct: 181 WFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE 213

[Close]

BLAST of Csa6G108600 vs. NCBI nr
Match: gi|659116544|ref|XP_008458126.1| (PREDICTED: probable plastid-lipid-associated protein 11 [Cucumis melo])

HSP 1 Score: 409.5 bits (1051), Expect = 3.7e-111
Identity = 206/213 (96.71%), Postives = 209/213 (98.12%), Query Frame = 1


Query: 1   MAKSLSLPSLPFIFPSSITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKN 60
           MAKSLSLPSLPFI PSSIT+HLSHLPKISCSSIS QSQSAK QLLTLISDQ+RGLKTQKN
Sbjct: 1   MAKSLSLPSLPFISPSSITTHLSHLPKISCSSISIQSQSAKHQLLTLISDQERGLKTQKN 60

Query: 61  PQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVL 120
           PQKLASIVKSID LASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGT+AGDVL
Sbjct: 61  PQKLASIVKSIDDLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTQAGDVL 120

Query: 121 QVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 180
           QVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG
Sbjct: 121 QVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 180

Query: 181 WFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE 214
           WFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE
Sbjct: 181 WFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE 213

[Close]

BLAST of Csa6G108600 vs. NCBI nr
Match: gi|703072316|ref|XP_010089253.1| (putative plastid-lipid-associated protein 11 [Morus notabilis])

HSP 1 Score: 333.2 bits (853), Expect = 3.4e-88
Identity = 165/213 (77.46%), Postives = 185/213 (86.85%), Query Frame = 1


Query: 1   MAKSLSLPSLPFIFPSSITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKN 60
           MA  L LP++P  F +    H SH PKI+CSS++ QSQS K++LL LI+ + RGLKTQ+N
Sbjct: 1   MASCLILPTIPSKFRNP--KHTSHAPKITCSSLTAQSQSGKKELLRLIAGEDRGLKTQRN 60

Query: 61  PQKLASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVL 120
           P KLASIVK+ID LA LG  +VTT  SLSATWRLLWTTEKEQLFII+KA LFGTRAGDVL
Sbjct: 61  PTKLASIVKAIDALADLGAGAVTTGSSLSATWRLLWTTEKEQLFIIDKASLFGTRAGDVL 120

Query: 121 QVIDVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQG 180
           QVIDVEK+ LNNVITFPPDGVFFVRS+IE+AS QRVNFRFTSAVLRGKNWEIPLPPFGQG
Sbjct: 121 QVIDVEKRRLNNVITFPPDGVFFVRSDIEIASKQRVNFRFTSAVLRGKNWEIPLPPFGQG 180

Query: 181 WFDTVYLDDEIRVVKDIRGDYLIVERAPYSWTE 214
           WFDTVYLDDEIRVVKDIRGDYL+V+RAPY+W E
Sbjct: 181 WFDTVYLDDEIRVVKDIRGDYLVVDRAPYAWKE 211

[Close]

BLAST of Csa6G108600 vs. NCBI nr
Match: gi|502167724|ref|XP_004514232.1| (PREDICTED: probable plastid-lipid-associated protein 11 isoform X1 [Cicer arietinum])

HSP 1 Score: 318.2 bits (814), Expect = 1.1e-83
Identity = 160/210 (76.19%), Postives = 179/210 (85.24%), Query Frame = 1


Query: 4   SLSLPSLPFIFPSSITSHLSHLPKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKNPQK 63
           SL LP +PF  P  + +H    PK + SS++ QSQSAK  LLTLISDQ RGLKTQ +P +
Sbjct: 6   SLFLP-MPFNTPKRLPTHCYTHPKFTSSSVTAQSQSAKDHLLTLISDQDRGLKTQNDPTR 65

Query: 64  LASIVKSIDHLASLGRNSVTTDDSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVLQVI 123
            ASIV +ID +A++G  SVTT D+LSATWRLLWTTEKEQLFIIEKA +FGTRAGDVLQVI
Sbjct: 66  RASIVAAIDAMAAIGSGSVTTGDTLSATWRLLWTTEKEQLFIIEKAPVFGTRAGDVLQVI 125

Query: 124 DVEKKSLNNVITFPPDGVFFVRSNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFD 183
           DV K SLNNVITFPPDGVFFVRSNIEV+S QRVNFRFTSAVLRGKNWEIPLPPFGQGWFD
Sbjct: 126 DVRKLSLNNVITFPPDGVFFVRSNIEVSSQQRVNFRFTSAVLRGKNWEIPLPPFGQGWFD 185

Query: 184 TVYLDDEIRVVKDIRGDYLIVERAPYSWTE 214
           TVYLDD++RVVKDIRGDYL+V+RA YSW E
Sbjct: 186 TVYLDDDLRVVKDIRGDYLVVDRASYSWKE 214

[Close]

BLAST of Csa6G108600 vs. NCBI nr
Match: gi|823125162|ref|XP_012483102.1| (PREDICTED: probable plastid-lipid-associated protein 11 [Gossypium raimondii])

HSP 1 Score: 317.8 bits (813), Expect = 1.5e-83
Identity = 154/188 (81.91%), Postives = 173/188 (92.02%), Query Frame = 1


Query: 26  PKISCSSISFQSQSAKRQLLTLISDQQRGLKTQKNPQKLASIVKSIDHLASLGRNSVTTD 85
           PKI+CSS++ QSQSAK+ LL LISDQ+RGLKTQ +  K  SI+KSID +A LGRN+VTT 
Sbjct: 30  PKITCSSLTTQSQSAKQHLLNLISDQERGLKTQNDTNKRDSIIKSIDAMAVLGRNTVTTG 89

Query: 86  DSLSATWRLLWTTEKEQLFIIEKAHLFGTRAGDVLQVIDVEKKSLNNVITFPPDGVFFVR 145
           DSLSATWRLLWTTEKEQLFIIEKA+LFGT+AGDVLQVIDV+ K+LNNVITFPPDGVFFVR
Sbjct: 90  DSLSATWRLLWTTEKEQLFIIEKAYLFGTQAGDVLQVIDVDNKTLNNVITFPPDGVFFVR 149

Query: 146 SNIEVASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFDTVYLDDEIRVVKDIRGDYLIVE 205
           S+IE+ASSQRVNF+FTSAVLRGKNWE PLPPFGQGWF+TVYLDDEIRVVKDIR DYL+VE
Sbjct: 150 SSIEIASSQRVNFKFTSAVLRGKNWEFPLPPFGQGWFETVYLDDEIRVVKDIRDDYLVVE 209

Query: 206 RAPYSWTE 214
           RAPY+W E
Sbjct: 210 RAPYNWKE 217

The following BLAST results are available for this feature:

BLAST of Csa6G108600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PAP11_ARATH	2.7e-77	73.80	Probable plastid-lipid-associated protein 11 OS=Arabidopsis thaliana GN=PAP11 PE...	[more]

BLAST of Csa6G108600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDV9_CUCSA	1.0e-115	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108600 PE=4 SV=1	[more]
W9QQ39_9ROSA	2.4e-88	77.46	Putative plastid-lipid-associated protein 11 OS=Morus notabilis GN=L484_021783 P...	[more]
A0A0D2PR91_GOSRA	1.0e-83	81.91	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G175700 PE=4 SV=1	[more]
A0A067H1B9_CITSI	1.3e-83	80.10	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027529mg PE=4 SV=1	[more]
U5FPZ5_POPTR	1.3e-83	75.12	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05740g PE=4 SV=1	[more]

BLAST of Csa6G108600 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00030.1	1.5e-78	73.80	Plastid-lipid associated protein PAP / fibrillin family protein	[more]

BLAST of Csa6G108600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445459\|ref\|XP_004140490.1\|	1.5e-115	100.00	PREDICTED: probable plastid-lipid-associated protein 11 [Cucumis sativus]	[more]
gi\|659116544\|ref\|XP_008458126.1\|	3.7e-111	96.71	PREDICTED: probable plastid-lipid-associated protein 11 [Cucumis melo]	[more]
gi\|703072316\|ref\|XP_010089253.1\|	3.4e-88	77.46	putative plastid-lipid-associated protein 11 [Morus notabilis]	[more]
gi\|502167724\|ref\|XP_004514232.1\|	1.1e-83	76.19	PREDICTED: probable plastid-lipid-associated protein 11 isoform X1 [Cicer arieti...	[more]
gi\|823125162\|ref\|XP_012483102.1\|	1.5e-83	81.91	PREDICTED: probable plastid-lipid-associated protein 11 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006843	PAP/fibrillin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU104171	cucumber EST collection version 3.0	transcribed_cluster
CU119788	cucumber EST collection version 3.0	transcribed_cluster
CU147498	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G108600.1	Csa6G108600.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU104171	CU104171	transcribed_cluster
CU119788	CU119788	transcribed_cluster
CU147498	CU147498	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006843	Plastid lipid-associated protein/fibrillin conserved domain	PFAM	PF04755	PAP_fibrillin	coord: 39..204 score: 2.3
None	No IPR available	PANTHER	PTHR31906	FAMILY NOT NAMED	coord: 1..213 score: 7.3
None	No IPR available	PANTHER	PTHR31906:SF3	SUBFAMILY NOT NAMED	coord: 1..213 score: 7.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G108600	Cla006670	Watermelon (97103) v1	cuwmB544
Csa6G108600	MELO3C021141	Melon (DHL92) v3.5.1	cumeB444
Csa6G108600	ClCG06G003000	Watermelon (Charleston Gray)	cuwcgB476
Csa6G108600	Lsi09G016310	Bottle gourd (USVL1VR-Ls)	culsiB402
Csa6G108600	MELO3C021141.2	Melon (DHL92) v3.6.1	cumedB425
Csa6G108600	Cla97C06G112390	Watermelon (97103) v2	cuwmbB468
Csa6G108600	Bhi12G001914	Wax gourd	cuwgoB545
Csa6G108600	CSPI06G08750	Wild cucumber (PI 183967)	cpicuB314
Csa6G108600	Cucsa.120630	Cucumber (Gy14) v1	cgycuB155
Csa6G108600	CmaCh17G004870	Cucurbita maxima (Rimu)	cmacuB379
Csa6G108600	CmoCh17G004590	Cucurbita moschata (Rifu)	cmocuB369
Csa6G108600	Cp4.1LG12g04190	Cucurbita pepo (Zucchini)	cpecuB152
Csa6G108600	CsGy6G008850	Cucumber (Gy14) v2	cgybcuB282
Csa6G108600	Carg26712	Silver-seed gourd	carcuB0587

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G108600	Silver-seed gourd	carcuB0631
Csa6G108600	Cucurbita maxima (Rimu)	cmacuB898
Csa6G108600	Cucurbita moschata (Rifu)	cmocuB885
Csa6G108600	Cucurbita pepo (Zucchini)	cpecuB328
Csa6G108600	Bottle gourd (USVL1VR-Ls)	culsiB398