Cp4.1LG12g00260 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g00260
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionLOB domain-containing protein, putative
LocationCp4.1LG12 : 118526 .. 119798 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGAGGGTCAGGAACTGCCGGTGGTGGCGGCGGCGGAGGAGGAGGAGGCCCATGTGGGGCGTGCAAGTTTTTGAGAAGAAAGTGTATTCCTGGTTGCATATTTGCGCCTTACTTCGACTCGGAGCAAGGCGCTGGGCACTTCGCCGCGGTGCACAAGGTGTTTGGAGCCAGCAATGTGTCCAAGCTCCTCCTTCATATCCCGGTTCACAAGCGCCTCGATGCTGTCGTCACCATTTGCTACGAGTCTCAAGCCCGCCTTCGAGACCCTGTCTATGGCTGCGTCGCTCACATCTTCGCTCTCCAACAACAGGTCAATTCAACTCAACTATTTTCCTTATTTATTTATTTATTATTATTCAAATAAATACTTCTACTTTTCCAATTATAATTATTTCTTCAAATGGGATCTAATTACGGTTCTTATGCCCTTAAATTAAATGGGTAATTTTTTTTTCTTGTTTTAAATTATGATTTTCGCAGTTATTAAGGAATTGGGCTGTCTACTGCCTTAAAGTTAAGCTCTTTATTAGAGGGACAAGATTTATTTCCTATGTTTCCCCAATTTTCAGCTTCTTGTCAGTGTTTCTAACCCAAAACATATTTTTCTTTTTATTAATCTTTGTATTTTGTTTCTTATAACGTTTTTTTTTTTATACCTAATATGTATACTGCATATGAGCAATACCTACTACGTAAATATCTATGTACTATTAACAGTATGGTAGGTAAATTTGTATTTTTTTTTTCTTTGTAAATAGTACAAAAATGAAATTAAAAAAATTATATATAATTTTATATTTTCTAACCGCAAAAGGCTTACAATTGTAAAATAGCTCTGTAAGATTGAATTAGAAGCTTCAAATGTTTTCACTTTGTAGGTGGTGAGTTTACAAGCCGAGCTGTCGTACCTTCAAGCTCATCTAGCAACACTGGAGCTTCCGTCGCCGCCTCCGCCGCCAAATTTTGCGGCGCAACCACCGGTGTCCATCTCAGACCTGCCGTCAGCTTCCTCCCTACCGGTCACTTACGACTTGTCGTCCCTCTTTGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCATCGCCAGTTCTCCAGTGGAGGAGCTGGCGGTTCATCCACAACGGCGGGAGAGGGCGATCTTCAAGCCCTGGCGCGCTCACTCCTCCATAGACATGGCGGTCCGCCGTGCTCCAATGCCTCGTCGCCGCCATCGCTCTCTAAATGA

mRNA sequence

ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGAGGGTCAGGAACTGCCGGTGGTGGCGGCGGCGGAGGAGGAGGAGGCCCATGTGGGGCGTGCAAGTTTTTGAGAAGAAAGTGTATTCCTGGTTGCATATTTGCGCCTTACTTCGACTCGGAGCAAGGCGCTGGGCACTTCGCCGCGGTGCACAAGGTGTTTGGAGCCAGCAATGTGTCCAAGCTCCTCCTTCATATCCCGGTTCACAAGCGCCTCGATGCTGTCGTCACCATTTGCTACGAGTCTCAAGCCCGCCTTCGAGACCCTGTCTATGGCTGCGTCGCTCACATCTTCGCTCTCCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGTCGTACCTTCAAGCTCATCTAGCAACACTGGAGCTTCCGTCGCCGCCTCCGCCGCCAAATTTTGCGGCGCAACCACCGGTGTCCATCTCAGACCTGCCGTCAGCTTCCTCCCTACCGGTCACTTACGACTTGTCGTCCCTCTTTGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCATCGCCAGTTCTCCAGTGGAGGAGCTGGCGGTTCATCCACAACGGCGGGAGAGGGCGATCTTCAAGCCCTGGCGCGCTCACTCCTCCATAGACATGGCGGTCCGCCGTGCTCCAATGCCTCGTCGCCGCCATCGCTCTCTAAATGA

Coding sequence (CDS)

ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGAGGGTCAGGAACTGCCGGTGGTGGCGGCGGCGGAGGAGGAGGAGGCCCATGTGGGGCGTGCAAGTTTTTGAGAAGAAAGTGTATTCCTGGTTGCATATTTGCGCCTTACTTCGACTCGGAGCAAGGCGCTGGGCACTTCGCCGCGGTGCACAAGGTGTTTGGAGCCAGCAATGTGTCCAAGCTCCTCCTTCATATCCCGGTTCACAAGCGCCTCGATGCTGTCGTCACCATTTGCTACGAGTCTCAAGCCCGCCTTCGAGACCCTGTCTATGGCTGCGTCGCTCACATCTTCGCTCTCCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGTCGTACCTTCAAGCTCATCTAGCAACACTGGAGCTTCCGTCGCCGCCTCCGCCGCCAAATTTTGCGGCGCAACCACCGGTGTCCATCTCAGACCTGCCGTCAGCTTCCTCCCTACCGGTCACTTACGACTTGTCGTCCCTCTTTGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCATCGCCAGTTCTCCAGTGGAGGAGCTGGCGGTTCATCCACAACGGCGGGAGAGGGCGATCTTCAAGCCCTGGCGCGCTCACTCCTCCATAGACATGGCGGTCCGCCGTGCTCCAATGCCTCGTCGCCGCCATCGCTCTCTAAATGA

Protein sequence

MSANPSTSGGGGGSGTAGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPSPPPPPNFAAQPPVSISDLPSASSLPVTYDLSSLFDPMAQPAWAMQQQRLDHRQFSSGGAGGSSTTAGEGDLQALARSLLHRHGGPPCSNASSPPSLSK
Homology
[Close]
BLAST of Cp4.1LG12g00260 vs. Swiss-Prot
Match: LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2)

HSP 1 Score: 271.9 bits (694), Expect = 6.4e-72
Identity = 159/242 (65.70%), Postives = 181/242 (74.79%), Query Frame = 1 

Query: 9   GGGGGSGTAGGGG--GGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFG 68
           GG GG G++GGGG  GGGGGGPCGACKFLRRKC+PGCIFAPYFDSEQG+ +FAAVHKVFG
Sbjct: 16  GGCGGGGSSGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFG 75

Query: 69  ASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQ 128
           ASNVSKLLLHIPVH+R DAVVTICYE+QAR+RDP+YGCVAHIFALQQQVV+LQAE+SYLQ
Sbjct: 76  ASNVSKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQ 135

Query: 129 AHLATLELPSP---------PPPPNFAAQPPVSISDLP-SASSLPVTYDLSSLFD-PMAQ 188
           AHLA+LELP P         P P  F   PP++I+DLP S S LP TYDL+S+FD   + 
Sbjct: 136 AHLASLELPQPQTRPQPMPQPQPLFFTPPPPLAITDLPASVSPLPSTYDLASIFDQTTSS 195

Query: 189 PAWAMQQQR-LDHRQFSSGGAGGSSTTAGEG-----DLQALARSLLHRHGGPPCSNASSP 232
            AWA QQ+R +D R      +  SS   G G     DLQALA  LLHR G PP +     
Sbjct: 196 SAWATQQRRFIDPRHQYGVSSSSSSVAVGLGGENSHDLQALAHELLHRQGSPPPAATDHS 255

[Close]
BLAST of Cp4.1LG12g00260 vs. Swiss-Prot
Match: LBD30_ARATH (LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.3e-64
Identity = 140/220 (63.64%), Postives = 159/220 (72.27%), Query Frame = 1 

Query: 2   SANPSTSGGGGGSGTAGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAV 61
           S NPS+S GGGG             GPCGACKFLRRKC+ GCIFAPYFDSEQGA HFAAV
Sbjct: 4   SGNPSSSSGGGG-------------GPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAV 63

Query: 62  HKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAE 121
           HKVFGASNVSKLL H+P HKR DAVV+IC+E+QARLRDP+YGCV+HI +LQQQVVSLQ E
Sbjct: 64  HKVFGASNVSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTE 123

Query: 122 LSYLQAHLATLELPSPPPP----PNFAAQPPVSISDLPSASSLPVTYDLSSLFDPMAQPA 181
           LSYLQAHLATLELP P PP     +  +   +SI+DLP+ S  P  YDLSS+F+P+    
Sbjct: 124 LSYLQAHLATLELPQPQPPQVPVSSSGSLQALSITDLPTIS--PSVYDLSSIFEPVMSST 183

Query: 182 WAMQQQ-RLDHRQFSSGGAGGSSTTAGEGDLQALARSLLH 217
           WAMQQQ R     F   G   SS   G G+LQALAR  +H
Sbjct: 184 WAMQQQPRPSDHLF---GVPSSSNMGGGGELQALAREFIH 205

[Close]
BLAST of Cp4.1LG12g00260 vs. Swiss-Prot
Match: LBD19_ARATH (LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.3e-44
Identity = 102/199 (51.26%), Postives = 127/199 (63.82%), Query Frame = 1 

Query: 20  GGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFGASNVSKLLLHIPV 79
           GGG GG GPCGACKFLRRKC+ GC+FAPYFD+EQG   FAAVHKVFGASN SK+LL +P+
Sbjct: 8   GGGRGGEGPCGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLLRLPL 67

Query: 80  HKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPSPPP 139
           HKRLDAVVT+CYE+ AR+RDPVYG V H+F+LQ QV++LQAEL+++QA L+T++      
Sbjct: 68  HKRLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLSTIQ------ 127

Query: 140 PPNFAAQPPVSISDLPSASSLPVTYDLSSLFDPMAQPAWAMQQQRLDHRQFSSGGAGGSS 199
              F  Q P  +   PS             FDP     +AM+   LD      G      
Sbjct: 128 --RFPLQSPQQMQP-PS-------------FDPAHNNEYAMEPSNLDS---VWGEEHLLQ 181

Query: 200 TTAGEGDLQALARSLLHRH 219
              G+GD Q LA   + R+
Sbjct: 188 DGTGDGDFQELASQFVSRY 181

[Close]
BLAST of Cp4.1LG12g00260 vs. Swiss-Prot
Match: LBD31_ARATH (LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2)

HSP 1 Score: 172.9 bits (437), Expect = 4.0e-42
Identity = 103/208 (49.52%), Postives = 132/208 (63.46%), Query Frame = 1 

Query: 20  GGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFGASNVSKLLLHIPV 79
           G   G GGPCGACKFLRRKC+  C+FAPYFDS +G  HF AVHKVFGASN SKLL+ IP 
Sbjct: 3   GSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPA 62

Query: 80  HKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPSPPP 139
            +RLDAVVT+ YE+ ARLRDPVYGCV HIFALQ QV++LQAEL+Y+Q  L+TL+   PP 
Sbjct: 63  SRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTLQGLPPPN 122

Query: 140 PPNFAAQPPVSISDLPSASSLPVTYDLSSLFDPMAQPAWAMQQQRLDHRQF--------- 199
             N +     S S++P  SS+    ++SS    +  P  + QQ++   ++          
Sbjct: 123 SQNNSRTEAASSSNVPLISSVDSKDNMSSSSSHI--PCMSQQQEQEQPKEAIEVPTESVD 182

Query: 200 SSGGAGGSSTTAGEGDLQALARSLLHRH 219
            S   G  +    +GDL ALAR    ++
Sbjct: 183 LSTFFGLENPVDEDGDLNALAREFFTKY 208

[Close]
BLAST of Cp4.1LG12g00260 vs. Swiss-Prot
Match: LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.2e-39
Identity = 75/105 (71.43%), Postives = 87/105 (82.86%), Query Frame = 1 

Query: 26  GGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFGASNVSKLLLHIPVHKRLDA 85
           G PCGACKFLRRKC  GC+FAPYF  EQGA HFAA+HKVFGASN SKLL H+P+  R +A
Sbjct: 9   GSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEA 68

Query: 86  VVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLA 131
            +TI YE+QARL+DP+YGCV+HIFALQQQVV+LQAEL  L+   A
Sbjct: 69  AITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAA 113

[Close]
BLAST of Cp4.1LG12g00260 vs. TrEMBL
Match: A0A0A0KEN5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G076840 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 5.2e-105
Identity = 209/241 (86.72%), Postives = 218/241 (90.46%), Query Frame = 1 

Query: 1   MSANPSTSGGGG-GSGTAGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFA 60
           MSANPSTSGGGG G+ + GG  G GGGGPCGACKFLRRKC+PGCIFAPYFDSEQGA HFA
Sbjct: 1   MSANPSTSGGGGPGTASTGGSVGAGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFA 60

Query: 61  AVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQ 120
           AVHKVFGASNVSKLLLHIPVHKRLDAVVTICYE+QARLRDPVYGCVAHIFALQQQVVSLQ
Sbjct: 61  AVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQ 120

Query: 121 AELSYLQAHLATLELPS------PPPPPNFAAQPPVSISDLPSASSLPVTYDLSSLFDPM 180
           AEL+YLQAHLATLELPS      PPPPP+F AQPP+SISDLPSASSLP TYDLSSLFDPM
Sbjct: 121 AELTYLQAHLATLELPSPPNPPPPPPPPSFPAQPPLSISDLPSASSLPATYDLSSLFDPM 180

Query: 181 AQPAWAMQQQRLDHRQFSSGGAGGSSTTAGEGDLQALARSLLHRHGGPPCSNASSPPSLS 235
           AQPAWAMQQQRLDHRQF +GG GGSST  GEGDLQALAR LL RHG PPCS+ASSP SLS
Sbjct: 181 AQPAWAMQQQRLDHRQF-AGGGGGSSTAPGEGDLQALARELLLRHGAPPCSDASSPQSLS 240

[Close]
BLAST of Cp4.1LG12g00260 vs. TrEMBL
Match: W9QS27_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022439 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.5e-91
Identity = 188/240 (78.33%), Postives = 203/240 (84.58%), Query Frame = 1 

Query: 4   NPSTSGGGGGSGTAGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHK 63
           NPS+S GGGG     GGGG GGGGPCGACKFLRRKC+PGCIFAPYFDSEQGA HFAAVHK
Sbjct: 6   NPSSSSGGGG-----GGGGVGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHK 65

Query: 64  VFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELS 123
           VFGASNVSKLLLHIPVHKRLDAVVT+CYE+QARLRDPVYGCVAHIFALQQQVVSLQ ELS
Sbjct: 66  VFGASNVSKLLLHIPVHKRLDAVVTVCYEAQARLRDPVYGCVAHIFALQQQVVSLQTELS 125

Query: 124 YLQAHLATLELPS----PPPPPNFAAQPPVSISDLPSASSLPVTYDLSSLFDPMAQPAWA 183
           YLQAHLATLELPS    PPPPP+    PP+SI+DLPSASS+P TYDLSSLF+P+ QP W+
Sbjct: 126 YLQAHLATLELPSPPPAPPPPPSSLNPPPLSIADLPSASSVPATYDLSSLFEPIVQP-WS 185

Query: 184 MQQQRLDHRQFSSGGAGGSSTTAGEGDLQALARSLLHRHGGP-----PCSNASSPPSLSK 235
           MQQ++LD RQF  G  G SST+ G GDLQALAR LLHRHG P     PCS+AS  PSLSK
Sbjct: 186 MQQRQLDPRQF-GGSTGSSSTSGGGGDLQALARELLHRHGSPPHGPVPCSDASQSPSLSK 238

[Close]
BLAST of Cp4.1LG12g00260 vs. TrEMBL
Match: A0A0B0NJT7_GOSAR (LOB domain-containing 18-like protein OS=Gossypium arboreum GN=F383_20283 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.6e-90
Identity = 192/248 (77.42%), Postives = 210/248 (84.68%), Query Frame = 1 

Query: 1   MSANPSTSGG--GGGSGT-----AGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQ 60
           MS+NPS SGG  GGGSG+     A GGGGGGGGGPCGACKFLRRKC+PGCIFAPYFDSEQ
Sbjct: 1   MSSNPSNSGGSVGGGSGSCSGSAAAGGGGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQ 60

Query: 61  GAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQ 120
           GA HFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTIC+E+QARLRDPVYGCVAHIFALQQ
Sbjct: 61  GAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICFEAQARLRDPVYGCVAHIFALQQ 120

Query: 121 QVVSLQAELSYLQAHLATLELPSPPPPP-----NFAAQPPVSISDLPSASSLPVTYDLSS 180
           QVV+LQAELSYLQAHL TLELPSPPPPP        A PP+SISDLPSASS+P TYDLSS
Sbjct: 121 QVVNLQAELSYLQAHLTTLELPSPPPPPPPPSQTLVAAPPLSISDLPSASSVPATYDLSS 180

Query: 181 LFDPM-AQPAWAMQQQRLDHRQFSSGGAGGSSTTAGEGDLQALARSLLHRHGGP--PCSN 234
           LFDPM AQ +WAMQQ+++D RQ+  GG G +S+T G GDLQALAR LLHR G P  PC++
Sbjct: 181 LFDPMVAQTSWAMQQRQIDPRQY--GGTGSASST-GSGDLQALARELLHRQGSPHLPCTD 240

[Close]
BLAST of Cp4.1LG12g00260 vs. TrEMBL
Match: A0A0D2MZ41_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G161100 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.3e-89
Identity = 190/248 (76.61%), Postives = 208/248 (83.87%), Query Frame = 1 

Query: 1   MSANPSTSGG--GGGSGTAGG-----GGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQ 60
           MS+NPS SGG  GGGSG+  G     GGGG GGGPCGACKFLRRKC+PGCIFAPYFDSEQ
Sbjct: 1   MSSNPSNSGGSVGGGSGSCSGSAGGSGGGGSGGGPCGACKFLRRKCVPGCIFAPYFDSEQ 60

Query: 61  GAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQ 120
           GA HFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTIC+E+QARLRDPVYGCVAHIFALQQ
Sbjct: 61  GAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICFEAQARLRDPVYGCVAHIFALQQ 120

Query: 121 QVVSLQAELSYLQAHLATLELPSPPPPP-----NFAAQPPVSISDLPSASSLPVTYDLSS 180
           QVV+LQAELSYLQAHL TLELPSPPPPP        A PP+SISDLPSASS+P TYDLSS
Sbjct: 121 QVVNLQAELSYLQAHLTTLELPSPPPPPPPPSQTLVAAPPLSISDLPSASSVPATYDLSS 180

Query: 181 LFDPM-AQPAWAMQQQRLDHRQFSSGGAGGSSTTAGEGDLQALARSLLHRHGGP--PCSN 234
           LFDPM AQ +WAMQQ+++D RQ+  GG G +S+T G GDLQALAR LLHR G P  PC++
Sbjct: 181 LFDPMVAQTSWAMQQRQIDPRQY--GGTGSASST-GSGDLQALARELLHRQGSPHLPCTD 240

[Close]
BLAST of Cp4.1LG12g00260 vs. TrEMBL
Match: V4TY07_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021992mg PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.5e-88
Identity = 188/249 (75.50%), Postives = 201/249 (80.72%), Query Frame = 1 

Query: 1   MSANPSTSG------GGGGSGTAGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQG 60
           MSANPS SG      GGGGS +  GGG GG  GPCGACKFLRRKC+PGCIFAPYFDSEQG
Sbjct: 1   MSANPSISGSVGGGGGGGGSSSGCGGGSGGSSGPCGACKFLRRKCVPGCIFAPYFDSEQG 60

Query: 61  AGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQ 120
           A HFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYE+QARLRDPVYGCVAHIFALQQQ
Sbjct: 61  AAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQ 120

Query: 121 VVSLQAELSYLQAHLATLELPSPPPPP---NFAAQPPVSISDLPSASSLPVTYDLSSLFD 180
           VV+LQAELSYLQAHLATLELPSPPPPP   N    PP+SIS LPSASS+P TYDLS+LFD
Sbjct: 121 VVNLQAELSYLQAHLATLELPSPPPPPPSQNQMTAPPLSISGLPSASSMPATYDLSTLFD 180

Query: 181 PMAQPA-WAMQQQRLDHRQFSSGGAGGSSTTAGEGDLQALARSLLHRHGGP-----PCSN 235
           PM QPA WAMQQ+++D RQF            G GDLQA+AR LLHR G P     PC++
Sbjct: 181 PMVQPAPWAMQQRQMDPRQF------------GGGDLQAMARELLHRQGSPPPGSMPCTD 237

[Close]
BLAST of Cp4.1LG12g00260 vs. TAIR10
Match: AT2G45420.1 (AT2G45420.1 LOB domain-containing protein 18)

HSP 1 Score: 271.9 bits (694), Expect = 3.6e-73
Identity = 159/242 (65.70%), Postives = 181/242 (74.79%), Query Frame = 1 

Query: 9   GGGGGSGTAGGGG--GGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFG 68
           GG GG G++GGGG  GGGGGGPCGACKFLRRKC+PGCIFAPYFDSEQG+ +FAAVHKVFG
Sbjct: 16  GGCGGGGSSGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFG 75

Query: 69  ASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQ 128
           ASNVSKLLLHIPVH+R DAVVTICYE+QAR+RDP+YGCVAHIFALQQQVV+LQAE+SYLQ
Sbjct: 76  ASNVSKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQ 135

Query: 129 AHLATLELPSP---------PPPPNFAAQPPVSISDLP-SASSLPVTYDLSSLFD-PMAQ 188
           AHLA+LELP P         P P  F   PP++I+DLP S S LP TYDL+S+FD   + 
Sbjct: 136 AHLASLELPQPQTRPQPMPQPQPLFFTPPPPLAITDLPASVSPLPSTYDLASIFDQTTSS 195

Query: 189 PAWAMQQQR-LDHRQFSSGGAGGSSTTAGEG-----DLQALARSLLHRHGGPPCSNASSP 232
            AWA QQ+R +D R      +  SS   G G     DLQALA  LLHR G PP +     
Sbjct: 196 SAWATQQRRFIDPRHQYGVSSSSSSVAVGLGGENSHDLQALAHELLHRQGSPPPAATDHS 255

[Close]
BLAST of Cp4.1LG12g00260 vs. TAIR10
Match: AT4G00220.1 (AT4G00220.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 247.7 bits (631), Expect = 7.2e-66
Identity = 140/220 (63.64%), Postives = 159/220 (72.27%), Query Frame = 1 

Query: 2   SANPSTSGGGGGSGTAGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAV 61
           S NPS+S GGGG             GPCGACKFLRRKC+ GCIFAPYFDSEQGA HFAAV
Sbjct: 4   SGNPSSSSGGGG-------------GPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAV 63

Query: 62  HKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAE 121
           HKVFGASNVSKLL H+P HKR DAVV+IC+E+QARLRDP+YGCV+HI +LQQQVVSLQ E
Sbjct: 64  HKVFGASNVSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTE 123

Query: 122 LSYLQAHLATLELPSPPPP----PNFAAQPPVSISDLPSASSLPVTYDLSSLFDPMAQPA 181
           LSYLQAHLATLELP P PP     +  +   +SI+DLP+ S  P  YDLSS+F+P+    
Sbjct: 124 LSYLQAHLATLELPQPQPPQVPVSSSGSLQALSITDLPTIS--PSVYDLSSIFEPVMSST 183

Query: 182 WAMQQQ-RLDHRQFSSGGAGGSSTTAGEGDLQALARSLLH 217
           WAMQQQ R     F   G   SS   G G+LQALAR  +H
Sbjct: 184 WAMQQQPRPSDHLF---GVPSSSNMGGGGELQALAREFIH 205

[Close]
BLAST of Cp4.1LG12g00260 vs. TAIR10
Match: AT2G45410.1 (AT2G45410.1 LOB domain-containing protein 19)

HSP 1 Score: 179.5 bits (454), Expect = 2.4e-45
Identity = 102/199 (51.26%), Postives = 127/199 (63.82%), Query Frame = 1 

Query: 20  GGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFGASNVSKLLLHIPV 79
           GGG GG GPCGACKFLRRKC+ GC+FAPYFD+EQG   FAAVHKVFGASN SK+LL +P+
Sbjct: 8   GGGRGGEGPCGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLLRLPL 67

Query: 80  HKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPSPPP 139
           HKRLDAVVT+CYE+ AR+RDPVYG V H+F+LQ QV++LQAEL+++QA L+T++      
Sbjct: 68  HKRLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLSTIQ------ 127

Query: 140 PPNFAAQPPVSISDLPSASSLPVTYDLSSLFDPMAQPAWAMQQQRLDHRQFSSGGAGGSS 199
              F  Q P  +   PS             FDP     +AM+   LD      G      
Sbjct: 128 --RFPLQSPQQMQP-PS-------------FDPAHNNEYAMEPSNLDS---VWGEEHLLQ 181

Query: 200 TTAGEGDLQALARSLLHRH 219
              G+GD Q LA   + R+
Sbjct: 188 DGTGDGDFQELASQFVSRY 181

[Close]
BLAST of Cp4.1LG12g00260 vs. TAIR10
Match: AT4G00210.1 (AT4G00210.1 LOB domain-containing protein 31)

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-43
Identity = 103/208 (49.52%), Postives = 132/208 (63.46%), Query Frame = 1 

Query: 20  GGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFGASNVSKLLLHIPV 79
           G   G GGPCGACKFLRRKC+  C+FAPYFDS +G  HF AVHKVFGASN SKLL+ IP 
Sbjct: 3   GSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPA 62

Query: 80  HKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPSPPP 139
            +RLDAVVT+ YE+ ARLRDPVYGCV HIFALQ QV++LQAEL+Y+Q  L+TL+   PP 
Sbjct: 63  SRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTLQGLPPPN 122

Query: 140 PPNFAAQPPVSISDLPSASSLPVTYDLSSLFDPMAQPAWAMQQQRLDHRQF--------- 199
             N +     S S++P  SS+    ++SS    +  P  + QQ++   ++          
Sbjct: 123 SQNNSRTEAASSSNVPLISSVDSKDNMSSSSSHI--PCMSQQQEQEQPKEAIEVPTESVD 182

Query: 200 SSGGAGGSSTTAGEGDLQALARSLLHRH 219
            S   G  +    +GDL ALAR    ++
Sbjct: 183 LSTFFGLENPVDEDGDLNALAREFFTKY 208

[Close]
BLAST of Cp4.1LG12g00260 vs. TAIR10
Match: AT3G58190.1 (AT3G58190.1 lateral organ boundaries-domain 29)

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-40
Identity = 75/105 (71.43%), Postives = 87/105 (82.86%), Query Frame = 1 

Query: 26  GGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFGASNVSKLLLHIPVHKRLDA 85
           G PCGACKFLRRKC  GC+FAPYF  EQGA HFAA+HKVFGASN SKLL H+P+  R +A
Sbjct: 9   GSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEA 68

Query: 86  VVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLA 131
            +TI YE+QARL+DP+YGCV+HIFALQQQVV+LQAEL  L+   A
Sbjct: 69  AITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAA 113

[Close]
BLAST of Cp4.1LG12g00260 vs. NCBI nr
Match: gi|449454632|ref|XP_004145058.1| (PREDICTED: LOB domain-containing protein 18-like [Cucumis sativus])

HSP 1 Score: 388.7 bits (997), Expect = 7.4e-105
Identity = 209/241 (86.72%), Postives = 218/241 (90.46%), Query Frame = 1 

Query: 1   MSANPSTSGGGG-GSGTAGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFA 60
           MSANPSTSGGGG G+ + GG  G GGGGPCGACKFLRRKC+PGCIFAPYFDSEQGA HFA
Sbjct: 1   MSANPSTSGGGGPGTASTGGSVGAGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFA 60

Query: 61  AVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQ 120
           AVHKVFGASNVSKLLLHIPVHKRLDAVVTICYE+QARLRDPVYGCVAHIFALQQQVVSLQ
Sbjct: 61  AVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQ 120

Query: 121 AELSYLQAHLATLELPS------PPPPPNFAAQPPVSISDLPSASSLPVTYDLSSLFDPM 180
           AEL+YLQAHLATLELPS      PPPPP+F AQPP+SISDLPSASSLP TYDLSSLFDPM
Sbjct: 121 AELTYLQAHLATLELPSPPNPPPPPPPPSFPAQPPLSISDLPSASSLPATYDLSSLFDPM 180

Query: 181 AQPAWAMQQQRLDHRQFSSGGAGGSSTTAGEGDLQALARSLLHRHGGPPCSNASSPPSLS 235
           AQPAWAMQQQRLDHRQF +GG GGSST  GEGDLQALAR LL RHG PPCS+ASSP SLS
Sbjct: 181 AQPAWAMQQQRLDHRQF-AGGGGGSSTAPGEGDLQALARELLLRHGAPPCSDASSPQSLS 240

[Close]
BLAST of Cp4.1LG12g00260 vs. NCBI nr
Match: gi|703085826|ref|XP_010092844.1| (hypothetical protein L484_022439 [Morus notabilis])

HSP 1 Score: 343.2 bits (879), Expect = 3.6e-91
Identity = 188/240 (78.33%), Postives = 203/240 (84.58%), Query Frame = 1 

Query: 4   NPSTSGGGGGSGTAGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHK 63
           NPS+S GGGG     GGGG GGGGPCGACKFLRRKC+PGCIFAPYFDSEQGA HFAAVHK
Sbjct: 6   NPSSSSGGGG-----GGGGVGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHK 65

Query: 64  VFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELS 123
           VFGASNVSKLLLHIPVHKRLDAVVT+CYE+QARLRDPVYGCVAHIFALQQQVVSLQ ELS
Sbjct: 66  VFGASNVSKLLLHIPVHKRLDAVVTVCYEAQARLRDPVYGCVAHIFALQQQVVSLQTELS 125

Query: 124 YLQAHLATLELPS----PPPPPNFAAQPPVSISDLPSASSLPVTYDLSSLFDPMAQPAWA 183
           YLQAHLATLELPS    PPPPP+    PP+SI+DLPSASS+P TYDLSSLF+P+ QP W+
Sbjct: 126 YLQAHLATLELPSPPPAPPPPPSSLNPPPLSIADLPSASSVPATYDLSSLFEPIVQP-WS 185

Query: 184 MQQQRLDHRQFSSGGAGGSSTTAGEGDLQALARSLLHRHGGP-----PCSNASSPPSLSK 235
           MQQ++LD RQF  G  G SST+ G GDLQALAR LLHRHG P     PCS+AS  PSLSK
Sbjct: 186 MQQRQLDPRQF-GGSTGSSSTSGGGGDLQALARELLHRHGSPPHGPVPCSDASQSPSLSK 238

[Close]
BLAST of Cp4.1LG12g00260 vs. NCBI nr
Match: gi|728833682|gb|KHG13125.1| (LOB domain-containing 18 -like protein [Gossypium arboreum])

HSP 1 Score: 340.5 bits (872), Expect = 2.3e-90
Identity = 192/248 (77.42%), Postives = 210/248 (84.68%), Query Frame = 1 

Query: 1   MSANPSTSGG--GGGSGT-----AGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQ 60
           MS+NPS SGG  GGGSG+     A GGGGGGGGGPCGACKFLRRKC+PGCIFAPYFDSEQ
Sbjct: 1   MSSNPSNSGGSVGGGSGSCSGSAAAGGGGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQ 60

Query: 61  GAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQ 120
           GA HFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTIC+E+QARLRDPVYGCVAHIFALQQ
Sbjct: 61  GAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICFEAQARLRDPVYGCVAHIFALQQ 120

Query: 121 QVVSLQAELSYLQAHLATLELPSPPPPP-----NFAAQPPVSISDLPSASSLPVTYDLSS 180
           QVV+LQAELSYLQAHL TLELPSPPPPP        A PP+SISDLPSASS+P TYDLSS
Sbjct: 121 QVVNLQAELSYLQAHLTTLELPSPPPPPPPPSQTLVAAPPLSISDLPSASSVPATYDLSS 180

Query: 181 LFDPM-AQPAWAMQQQRLDHRQFSSGGAGGSSTTAGEGDLQALARSLLHRHGGP--PCSN 234
           LFDPM AQ +WAMQQ+++D RQ+  GG G +S+T G GDLQALAR LLHR G P  PC++
Sbjct: 181 LFDPMVAQTSWAMQQRQIDPRQY--GGTGSASST-GSGDLQALARELLHRQGSPHLPCTD 240

[Close]
BLAST of Cp4.1LG12g00260 vs. NCBI nr
Match: gi|1009168699|ref|XP_015902801.1| (PREDICTED: LOB domain-containing protein 18-like [Ziziphus jujuba])

HSP 1 Score: 339.3 bits (869), Expect = 5.2e-90
Identity = 190/246 (77.24%), Postives = 206/246 (83.74%), Query Frame = 1 

Query: 1   MSANPSTSGGGGGSGTAGG--GGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHF 60
           MSANPS+SGGGG S  +GG  GG GGGGGPCGACKFLRRKC+PGCIFAPYFDSEQGA HF
Sbjct: 1   MSANPSSSGGGGSSSGSGGCGGGSGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHF 60

Query: 61  AAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSL 120
           AAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYE+QARLRDPVYGCVAHIFALQQQVV+L
Sbjct: 61  AAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNL 120

Query: 121 QAELSYLQAHLATLELPSPPPPP---NFAAQPPVSISDLPSASSLPVTYDLSSLFDPMAQ 180
           QAELSYLQAHLATLELPSPPPPP        PP++I+DLPSASS+P TYDLSSLF+PM Q
Sbjct: 121 QAELSYLQAHLATLELPSPPPPPPPTTLVTPPPLTIADLPSASSVPTTYDLSSLFEPMVQ 180

Query: 181 PAWAMQQQRLDHRQF-SSGGAGGSSTTAGEGDLQALARSLLHRHGGPP-----CSNA-SS 235
           P W MQQ+ +D RQF SS G+   +  +G GDL ALAR LLHRHG PP     C +A SS
Sbjct: 181 P-WVMQQRPMDPRQFGSSTGSSSGTGGSGGGDLHALARELLHRHGSPPHGSMTCPDASSS 240

[Close]
BLAST of Cp4.1LG12g00260 vs. NCBI nr
Match: gi|823150840|ref|XP_012475250.1| (PREDICTED: LOB domain-containing protein 18 [Gossypium raimondii])

HSP 1 Score: 336.7 bits (862), Expect = 3.4e-89
Identity = 190/248 (76.61%), Postives = 208/248 (83.87%), Query Frame = 1 

Query: 1   MSANPSTSGG--GGGSGTAGG-----GGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQ 60
           MS+NPS SGG  GGGSG+  G     GGGG GGGPCGACKFLRRKC+PGCIFAPYFDSEQ
Sbjct: 1   MSSNPSNSGGSVGGGSGSCSGSAGGSGGGGSGGGPCGACKFLRRKCVPGCIFAPYFDSEQ 60

Query: 61  GAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQ 120
           GA HFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTIC+E+QARLRDPVYGCVAHIFALQQ
Sbjct: 61  GAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICFEAQARLRDPVYGCVAHIFALQQ 120

Query: 121 QVVSLQAELSYLQAHLATLELPSPPPPP-----NFAAQPPVSISDLPSASSLPVTYDLSS 180
           QVV+LQAELSYLQAHL TLELPSPPPPP        A PP+SISDLPSASS+P TYDLSS
Sbjct: 121 QVVNLQAELSYLQAHLTTLELPSPPPPPPPPSQTLVAAPPLSISDLPSASSVPATYDLSS 180

Query: 181 LFDPM-AQPAWAMQQQRLDHRQFSSGGAGGSSTTAGEGDLQALARSLLHRHGGP--PCSN 234
           LFDPM AQ +WAMQQ+++D RQ+  GG G +S+T G GDLQALAR LLHR G P  PC++
Sbjct: 181 LFDPMVAQTSWAMQQRQIDPRQY--GGTGSASST-GSGDLQALARELLHRQGSPHLPCTD 240

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g00260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD18_ARATH6.4e-7265.70LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2[more]
LBD30_ARATH1.3e-6463.64LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1[more]
LBD19_ARATH4.3e-4451.26LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1[more]
LBD31_ARATH4.0e-4249.52LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2[more]
LBD29_ARATH3.2e-3971.43LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1[more]
BLAST of Cp4.1LG12g00260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEN5_CUCSA5.2e-10586.72Uncharacterized protein OS=Cucumis sativus GN=Csa_6G076840 PE=4 SV=1[more]
W9QS27_9ROSA2.5e-9178.33Uncharacterized protein OS=Morus notabilis GN=L484_022439 PE=4 SV=1[more]
A0A0B0NJT7_GOSAR1.6e-9077.42LOB domain-containing 18-like protein OS=Gossypium arboreum GN=F383_20283 PE=4 S... [more]
A0A0D2MZ41_GOSRA2.3e-8976.61Uncharacterized protein OS=Gossypium raimondii GN=B456_004G161100 PE=4 SV=1[more]
V4TY07_9ROSI1.5e-8875.50Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021992mg PE=4 SV=1[more]
BLAST of Cp4.1LG12g00260 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G45420.13.6e-7365.70 LOB domain-containing protein 18[more]
AT4G00220.17.2e-6663.64 Lateral organ boundaries (LOB) domain family protein[more]
AT2G45410.12.4e-4551.26 LOB domain-containing protein 19[more]
AT4G00210.12.3e-4349.52 LOB domain-containing protein 31[more]
AT3G58190.11.8e-4071.43 lateral organ boundaries-domain 29[more]
BLAST of Cp4.1LG12g00260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454632|ref|XP_004145058.1|7.4e-10586.72PREDICTED: LOB domain-containing protein 18-like [Cucumis sativus][more]
gi|703085826|ref|XP_010092844.1|3.6e-9178.33hypothetical protein L484_022439 [Morus notabilis][more]
gi|728833682|gb|KHG13125.1|2.3e-9077.42LOB domain-containing 18 -like protein [Gossypium arboreum][more]
gi|1009168699|ref|XP_015902801.1|5.2e-9077.24PREDICTED: LOB domain-containing protein 18-like [Ziziphus jujuba][more]
gi|823150840|ref|XP_012475250.1|3.4e-8976.61PREDICTED: LOB domain-containing protein 18 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048468 cell development
biological_process GO:0007155 cell adhesion
biological_process GO:0010089 xylem development
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0048765 root hair cell differentiation
biological_process GO:0010311 lateral root formation
biological_process GO:0071555 cell wall organization
biological_process GO:0044036 cell wall macromolecule metabolic process
biological_process GO:0045010 actin nucleation
biological_process GO:0016043 cellular component organization
biological_process GO:0008150 biological_process
biological_process GO:0010015 root morphogenesis
biological_process GO:0090558 plant epidermis development
biological_process GO:0071554 cell wall organization or biogenesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g00260.1Cp4.1LG12g00260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 28..126
score: 2.0
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 27..129
score: 22
NoneNo IPR availablePANTHERPTHR31529FAMILY NOT NAMEDcoord: 1..225
score: 8.1E
NoneNo IPR availablePANTHERPTHR31529:SF3LOB DOMAIN-CONTAINING PROTEIN 18-RELATEDcoord: 1..225
score: 8.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g00260Cucsa.362830Cucumber (Gy14) v1cgycpeB0947
Cp4.1LG12g00260CmaCh14G019810Cucurbita maxima (Rimu)cmacpeB259
Cp4.1LG12g00260CmaCh17G000280Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g00260CmaCh08G009530Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g00260CmoCh14G020430Cucurbita moschata (Rifu)cmocpeB223
Cp4.1LG12g00260CmoCh08G009210Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g00260CmoCh17G000310Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g00260Cla021305Watermelon (97103) v1cpewmB151
Cp4.1LG12g00260Cla006955Watermelon (97103) v1cpewmB157
Cp4.1LG12g00260Csa3G126090Cucumber (Chinese Long) v2cpecuB135
Cp4.1LG12g00260Csa6G076840Cucumber (Chinese Long) v2cpecuB143
Cp4.1LG12g00260MELO3C022505Melon (DHL92) v3.5.1cpemeB115
Cp4.1LG12g00260MELO3C006183Melon (DHL92) v3.5.1cpemeB141
Cp4.1LG12g00260ClCG05G002190Watermelon (Charleston Gray)cpewcgB138
Cp4.1LG12g00260ClCG06G000340Watermelon (Charleston Gray)cpewcgB141
Cp4.1LG12g00260CSPI06G05820Wild cucumber (PI 183967)cpecpiB145
Cp4.1LG12g00260CSPI03G09510Wild cucumber (PI 183967)cpecpiB136
Cp4.1LG12g00260Lsi09G019000Bottle gourd (USVL1VR-Ls)cpelsiB104
Cp4.1LG12g00260Lsi05G019640Bottle gourd (USVL1VR-Ls)cpelsiB122
Cp4.1LG12g00260MELO3C022505.2Melon (DHL92) v3.6.1cpemedB141
Cp4.1LG12g00260CsaV3_6G006130Cucumber (Chinese Long) v3cpecucB0167
Cp4.1LG12g00260CsaV3_3G009630Cucumber (Chinese Long) v3cpecucB0153
Cp4.1LG12g00260Bhi12G002303Wax gourdcpewgoB0178
Cp4.1LG12g00260CsGy6G005800Cucumber (Gy14) v2cgybcpeB723
Cp4.1LG12g00260CsGy3G009580Cucumber (Gy14) v2cgybcpeB304
Cp4.1LG12g00260Carg14831Silver-seed gourdcarcpeB0881
Cp4.1LG12g00260Carg11089Silver-seed gourdcarcpeB1501
Cp4.1LG12g00260Carg10203Silver-seed gourdcarcpeB0322
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g00260Cp4.1LG17g02570Cucurbita pepo (Zucchini)cpecpeB174
Cp4.1LG12g00260Cp4.1LG03g17200Cucurbita pepo (Zucchini)cpecpeB184
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g00260Wax gourdcpewgoB0182
Cp4.1LG12g00260Cucumber (Gy14) v1cgycpeB0670
Cp4.1LG12g00260Cucurbita maxima (Rimu)cmacpeB811
Cp4.1LG12g00260Cucurbita moschata (Rifu)cmocpeB765
Cp4.1LG12g00260Melon (DHL92) v3.6.1cpemedB170